EWM28744.1, cds1905 (CDS) Nannochloropsis gaditana

Overview
NameEWM28744.1
Unique Namecds1905
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:451718..451907 -
Alignment locationCM002458.1:451011..451252 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28744.1
Productmitochondrial trna import complex
Orig transcript idgnl|cribi|Naga_100002g111.4863.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:451718..451907 -
CM002458.1supercontigCM002458.1:451011..451252 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
GO:0005750mitochondrial respiratory chain complex III
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0006122mitochondrial electron transport, ubiquinol to cytochrome c
Vocabulary: INTERPRO
TermDefinition
IPR003197QCR7
Homology
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|585111167|gb|EWM28744.1| (mitochondrial trna import complex [Nannochloropsis gaditana])

HSP 1 Score: 297.36 bits (760), Expect = 4.156e-102
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MVCMLLSGCAHHLCLSSASFTAPFRRSITRVRPSLFPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLFLEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLNP 143
            MVCMLLSGCAHHLCLSSASFTAPFRRSITRVRPSLFPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLFLEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLNP
Sbjct:    1 MVCMLLSGCAHHLCLSSASFTAPFRRSITRVRPSLFPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLFLEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLNP 143          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|676387507|ref|XP_009037032.1| (hypothetical protein AURANDRAFT_26379, partial [Aureococcus anophagefferens] >gi|323452432|gb|EGB08306.1| hypothetical protein AURANDRAFT_26379, partial [Aureococcus anophagefferens])

HSP 1 Score: 88.1965 bits (217), Expect = 3.448e-20
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0
Query:   60 LNNYGLRYQDLFLE-DQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            LN YGL+Y D+ +E D    KA+  +S EE  AR RR+KRA +IS KKK LPADLQ++Q PL PY +  +DE +A   ER+LLN
Sbjct:    4 LNQYGLKYDDVKIEQDADYAKALGRISDEEVQARARRMKRAFDISFKKKSLPADLQRLQAPLAPYATPLIDEAKARRVERELLN 87          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|1109199302|ref|XP_019158090.1| (PREDICTED: cytochrome b-c1 complex subunit 7-2-like [Ipomoea nil])

HSP 1 Score: 77.7962 bits (190), Expect = 8.387e-16
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 0
Query:   42 TKFWDGLRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            +K W    + + K +   L  YGLRY DLF   E   + +A+  L  E   AR +R+KRAI++S+K +YLP DLQKMQTP + YL   +D VE E  ER  L 
Sbjct:   14 SKNW--FAAQHMKAISNRLRKYGLRYDDLFDPKEHLDIKEAMERLPQEVIDARNQRLKRAIDLSMKHEYLPDDLQKMQTPFRSYLHEMVDLVEKERAERTALG 114          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|502124743|ref|XP_004498653.1| (PREDICTED: cytochrome b-c1 complex subunit 7-2-like [Cicer arietinum])

HSP 1 Score: 75.485 bits (184), Expect = 7.670e-15
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 0
Query:   50 SSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            + + K V   L  YGLRY DL+  L D  + +A++ L  E   AR  R+KRAI++SLK +YLP DLQ MQTP + YL   L  V+ E+ ER+ L 
Sbjct:   18 AQHMKAVSNRLRKYGLRYDDLYDPLYDVDIKEALNRLPKEVVDARHARLKRAIDLSLKHEYLPEDLQAMQTPFRGYLQEMLTFVKREKAEREALG 112          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|255077984|ref|XP_002502572.1| (mitochondrial tRNA import complex [Micromonas commoda] >gi|226517837|gb|ACO63830.1| mitochondrial tRNA import complex [Micromonas commoda])

HSP 1 Score: 75.0998 bits (183), Expect = 9.211e-15
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 0
Query:   52 YTKLVVGELNNYGLRYQDLFLE--DQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            Y   V  EL+ YGLRY DL  E  +  V +A+  L  EE+  R +R+KRA+++S+K  YL A++QK QTP K Y+   L+EVEAE  ER  L 
Sbjct:   20 YQGWVGAELSKYGLRYDDLLDETMNLDVAEALKRLPQEERDLRMQRLKRAMDLSMKHVYLDAEMQKKQTPFKWYIKPVLEEVEAERDERAALG 112          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|565452947|ref|XP_006286400.1| (hypothetical protein CARUB_v10002241mg [Capsella rubella] >gi|482555106|gb|EOA19298.1| hypothetical protein CARUB_v10002241mg [Capsella rubella])

HSP 1 Score: 75.485 bits (184), Expect = 9.438e-15
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 0
Query:   39 SVITKFWDG----LRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            S + +F D     L   + K V   L  YGLRY DL+  L D  + +A++ L  E   AR +R+KRA+++S+K +YLPADLQ MQTP + YL   L  V  E  ER+ L 
Sbjct:   14 SFLQRFLDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVDARNQRLKRAMDLSMKHEYLPADLQAMQTPFRSYLQDMLALVRRERVEREALG 123          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|848894491|ref|XP_012847285.1| (PREDICTED: cytochrome b-c1 complex subunit 7 [Erythranthe guttata] >gi|604317160|gb|EYU29236.1| hypothetical protein MIMGU_mgv1a016394mg [Erythranthe guttata] >gi|604317161|gb|EYU29237.1| hypothetical protein MIMGU_mgv1a016394mg [Erythranthe guttata] >gi|604317162|gb|EYU29238.1| hypothetical protein MIMGU_mgv1a016394mg [Erythranthe guttata])

HSP 1 Score: 75.0998 bits (183), Expect = 9.445e-15
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 0
Query:   48 LRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            L + + K + G L+ YGLRY DL+  + +  V +A++ L  E   AR +R+KRA+++S+K +YLP DLQ+MQTP + YL   L  V+ E+ ER+ L 
Sbjct:   17 LAAYHMKTLSGRLSKYGLRYDDLYDPMYELDVKEAMNRLPREIVDARNQRLKRAMDLSMKHQYLPDDLQRMQTPFRSYLQEMLAFVKREQAEREALG 113          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|1117491427|ref|XP_019437715.1| (PREDICTED: cytochrome b-c1 complex subunit 7-2-like [Lupinus angustifolius] >gi|1102716417|gb|OIW15068.1| hypothetical protein TanjilG_13995 [Lupinus angustifolius])

HSP 1 Score: 74.3294 bits (181), Expect = 1.916e-14
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 0
Query:   36 FPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            F  S I    + L + + K +   L NYGLRY+DL+    D  V +A++ L  E   AR +R+KRAI++S+K +YLP DLQ +QTP + YL   L  V+ E  ER+ L 
Sbjct:    4 FLQSFIDPKKNWLAAIHMKTISKRLRNYGLRYEDLYDPYYDLDVKEALNRLPKEIVEARHQRLKRAIDLSMKHQYLPEDLQAVQTPFRSYLRDMLAFVKRERAEREALG 112          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|1137240565|gb|OMP01239.1| (Cytochrome b-c1 complex subunit 7 [Corchorus capsularis])

HSP 1 Score: 73.1738 bits (178), Expect = 6.060e-14
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0
Query:   48 LRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
            L + + K V   L NYGLRY+DL+    D  + +A++ L  E   AR +R+KRAI++S+K +YLP +LQ+MQTP + YL   L  V+ E  ER+ L 
Sbjct:   16 LAALHKKAVTQRLRNYGLRYEDLYDPYYDLDIKEALNRLPREIVDARNQRLKRAIDLSMKHEYLPKELQEMQTPFRGYLQDMLALVKKERAEREALG 112          
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|299116133|emb|CBN76042.1| (ubiquinol cytochrome c reductase subunit QCR7 [Ectocarpus siliculosus])

HSP 1 Score: 72.7886 bits (177), Expect = 6.336e-14
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0
Query:   50 SSYTKLVVGELNNYGLRYQDLFLE-DQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEV 131
            + Y + +  +LN +GL++ DL +E D  V +A+  L+PE+Q+AR+RR  RA +ISLKK  LP  +Q +Q P +PYL   + EV
Sbjct:   18 TQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEV 100          
The following BLAST results are available for this feature:
BLAST of EWM28744.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111167|gb|EWM28744.1|4.156e-102100.00mitochondrial trna import complex [Nannochloropsis... [more]
gi|676387507|ref|XP_009037032.1|3.448e-2053.57hypothetical protein AURANDRAFT_26379, partial [Au... [more]
gi|1109199302|ref|XP_019158090.1|8.387e-1643.69PREDICTED: cytochrome b-c1 complex subunit 7-2-lik... [more]
gi|502124743|ref|XP_004498653.1|7.670e-1545.26PREDICTED: cytochrome b-c1 complex subunit 7-2-lik... [more]
gi|255077984|ref|XP_002502572.1|9.211e-1546.24mitochondrial tRNA import complex [Micromonas comm... [more]
gi|565452947|ref|XP_006286400.1|9.438e-1541.82hypothetical protein CARUB_v10002241mg [Capsella r... [more]
gi|848894491|ref|XP_012847285.1|9.445e-1542.27PREDICTED: cytochrome b-c1 complex subunit 7 [Eryt... [more]
gi|1117491427|ref|XP_019437715.1|1.916e-1441.28PREDICTED: cytochrome b-c1 complex subunit 7-2-lik... [more]
gi|1137240565|gb|OMP01239.1|6.060e-1443.30Cytochrome b-c1 complex subunit 7 [Corchorus capsu... [more]
gi|299116133|emb|CBN76042.1|6.336e-1443.37ubiquinol cytochrome c reductase subunit QCR7 [Ect... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1910rna1910Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications