rna1910, rna1910 (mRNA) Nannochloropsis gaditana

Overview
Namerna1910
Unique Namerna1910
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2637
Alignment locationCM002458.1:450785..452004 -

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Properties
Property NameValue
Productmitochondrial trna import complex
Orig transcript idgnl|cribi|Naga_100002g111.4863.mrna
Orig protein idgnl|cribi|Naga_100002g111.4863
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:450785..452004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g111gene1823Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1910rna1910-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28744.1cds1905Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1910 ID=rna1910|Name=rna1910|organism=Nannochloropsis gaditana|type=mRNA|length=2637bp
TGGCGCCGGACAGTCTTGCGTCTTTTACGCGTTTCTGTGCTCCTTCCCCC
TTCGAGTGGCGGAGATCCTCGGACAAGTCAGCTTGAAGCCCGGTCCCGCG
CCAGCCTGAGGGGGCCCTCCACCCTTTTGGGCAATTTTCACGCACGTTTC
CGTATTCAAAGTGCTTATGTACGCTCTTGTATGATGTAGGATAATAATTG
GTGGAGATATCAACTTTTTGAAGACTTACTCCACCACTCATCCTCTTTCC
TTCACACGTACGGCAGTGAGTTAGGGGATCCATCGTGAAAACTTATCCAG
ACACCGAAGAAAAGGAAAATAGACAGTAATTATGGTAGGATTCACTACAT
CAACATGCTTGGTGCTATCCTTAGCAGCTCTGAGCGGCACGCGTACCACG
GCTTTCCAGCCGGCGGCAAGACCACCTGCCTCTTCTTGTCACTCTGGCAC
CCCGTCGGTCTCCGGCCCATGCAGCACCAACACCAGGCGCCACCCCCGCG
GCTGGGTTATGGCGGCGGCAGCCACCACCGCAGACGCCCACAGCACCAGC
CGAACCTCCTCTCCCTCTGCCGCCGCCTCCGCCAGCAGCCTGCCCGCCTT
TGATTTGAACAAGTACCTGCTCGACAAGAAGGACGCAGTGGAAAGCGCGT
TGGATGCCTCGCTCCAAGTGACCTCGCCGCAAGTTGCGAAGATCACCGAG
TCCATGCGCTACTCCCTTCTGGCGGGAGGCAAGCGGATACGGCCGATCAT
GTGCATCGCCGCCTGTGAGATGGCTGGCGGGACAGCCGAAGACGCGATGG
CAGCAGCTGTCGCCCTGGAGATGATCCACACGATGAGCCTTATCCACGAC
GACCTGCCCTCCATGGACAACGACTCCCTGCGTCGGGGCAAGCCCACGAA
CCATGTCATCTACGGCGAGGACGTGGCTATTCTGGCGGGAGATGCGCTGC
TGTCCACCGCCTTCGAGCACGTGGCCAAGCACACCCCGTCGCACGTGCCT
GCGGAACGCGTCGTGAGTGTGATCGCGCGCTTGGCCGCCTCGGTGGGGGC
GACGGGGCTGGCGGGCGGGCAGGTGATGGATTTGGAGTGCGAGGGAAAGG
AAGGCGTGGGGCTAGAGGAGCTAACCTGGATCCACACGCACAAGACGGCG
GCCCTGCTGAAGGTGAGCGTGGCAGCGGGGGCGATTCTGGGAGGGGCAAG
CGCGGAGGAGGTGGAGGCGTGCGAGACCTACGCCCTGGACATCGGGCTGG
CCTTCCAGGTGGCGGACGACATCCTGGACGTGACCGCGTCCACGGAGGCG
CTGGGCAAGACGGCGGGGAAGGATCTGAACATGGACAAGACCACCTACCC
GAAGCTCCTGGGGCTGGAGGGGAGCCGGGAGGAGGCGAGGCGGCTGGTGG
GAGAGGCCAAGGCGGCCCTGGGCCGGTTCGGAGGTCGGGCCGCGCCGCTT
TTGGCGATCGCCGACTACATTGTGGAGAGGAAGAACTAGGAAGGGAGGGC
GGGAACGGGTGTCGCGTGGGGCGGGGCGGCCGCAGGAGGGACCGTGGGCG
ACTGGGAGTGACGGAAGAAGCTTGCGGAGCGAGGACCGGGTGGCGGCGAC
GCATGGGAGGCGAGAGGCTGCGCGGTGGGAACGGAGGGGGCCGGCGTCGG
GATATTGGTGAGAAGGTGACACGTGGGTTGCGCCCTGCGAAGAGAAGGGA
AGAAGCGGGAGGCAGGGTATGGAGGGAGGGCGACGTCGGGGGGCTTGTAC
AGACCAGTGTCCTAAACCTCCTATTGAGACGCGAGGGGCGAAGAGGACAT
ACGTACGGAAGAGGAAAAGAACGGAAGAGATGCCTGCGGGGACTGGCCGA
GTGGGTGTCGTCGGGGGGCATGTCATGCTCTCATGCCAGAAAGAGGACCC
CCGAACAATGAGAAAGAAGGAGAAGGGTGCTTGTTTGCGGTTCGAACATG
ACTGCGTGGCGGCGGGGGATGGTAAATGCAGGTGGCGTGTCAGATTGAGG
AAATGGAGGGCTCGAAATCATGAAAGAAAACGGACGGAGGTGGGGCCACA
GAAGTGGTCCGGGTAACCCCGATGGCGCGTCGTGCGTGTATTCCTGCTTT
TCCCTGCTTGCTCCCATTCCCTCCTGAGGCTGCCGCAAGGCCGCTGGGTC
GCCTTCTCCTCACAGCCTCTCTCGATTACCCAAAGCAGCAAGTGCGAAAG
GCGATAACAACGCACCCCATGCCAACTTATTACGTACAATCACACCCTGC
CTGGCCTGCCCTCCTCACTCGCGCTCCTACTCCCACCATCCCTCCTGTGC
CTACGGGTTCAGGAGCTTTCGCTCCGTTTCCTCCGCCTCTACCTCGTCCA
GTGCGTGACTCAAGTACGGTTTCAAAGGGGTTTGCATTTTTTGCAGATCC
GCAGGGAGGTACTTCTTCTTCAGAGAGATCTCGATCGCTCGTTTGATGCG
TCGCTCCCGGGCCACTTGCTCTTCCGGAGACAAATGGTGGATGGCTTTCG
TCACTGCCTGATCCTCTAGGAACAGATCTTGATAGCGTAATCCTGTGTGA
CGGTAACAGGGAAGGAAATTGACAGTGCTAGATGAGACACGCCGTTGTCA
GGCTAGAGCGCGCCCCGTGGAATGTAGGGCGGTGTTA
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protein sequence of rna1910

>rna1910-protein ID=rna1910-protein|Name=rna1910|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MVCMLLSGCAHHLCLSSASFTAPFRRSITRVRPSLFPMSVITKFWDGLRS
SYTKLVVGELNNYGLRYQDLFLEDQAVTKAIHHLSPEEQVARERRIKRAI
EISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLNP
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mRNA from alignment at CM002458.1:450785..452004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1910 ID=rna1910|Name=rna1910|organism=Nannochloropsis gaditana|type=mRNA|length=1220bp|location=Sequence derived from alignment at CM002458.1:450785..452004- (Nannochloropsis gaditana)
CGGGCATCTGACTTCTTGCCCACGCTCATCGGTCCGCCGTTGTCGAGTCC
ATCCAAAGGCTTAGTAACGGGGCCGTTCGTGTCTCTGAGGGTCGGCCATG
GTGTGCATGTTGCTATCCGGCTGTGCTCACCACCTTTGCCTTTCCTCTGC
TTCCTTCACTGCCCCTTTCAGACGCTCTATAACACGAGTGAGACCAAGCT
TATTCCCAATGTCTGTAATAACTAAGTTCTGGGATGGCTTGCGCTCATCT
TACACGAAACTGGTCGTCGGAGAACTCAACAACTATGGTACGTGAGGCTG
TTAATTTTCGGAAGCTCGTATAGAGTCCTGTTTCACAGCCTTCATGGAGG
CTCTTTCCATGTTTGTTGCATGAATCACGAGCCATTCGACAACAAATCAT
AGTGATGAGGTAGCAAATGGCGATGTGTTGGCGCCAGGGCTGCTGATTTT
TACATGAAAGGGGAGCGGACTGCTCTGTGCACCTTATTGATGCGTCAGTC
CGTTGCATGCCCTTCTACCGCATCTCTTGAGAATATCGATCCGCGCTACG
TATGTTTTCATATCTACCTTTTACTTCCCGAATGAAGTTTACTGGTTTAT
TCGAAGATACTTTTTACATGGGTCTTTCTTCTTTCGCGGCGAAACTGAGA
CATCAGATAACACCGCCCTACATTCCACGGGGCGCGCTCTAGCCTGACAA
CGGCGTGTCTCATCTAGCACTGTCAATTTCCTTCCCTGTTACCGTCACAC
AGGATTACGCTATCAAGATCTGTTCCTAGAGGATCAGGCAGTGACGAAAG
CCATCCACCATTTGTCTCCGGAAGAGCAAGTGGCCCGGGAGCGACGCATC
AAACGAGCGATCGAGATCTCTCTGAAGAAGAAGTACCTCCCTGCGGATCT
GCAAAAAATGCAAACCCCTTTGAAACCGTACTTGAGTCACGCACTGGACG
AGGTAGAGGCGGAGGAAACGGAGCGAAAGCTCCTGAACCCGTAGGCACAG
GAGGGATGGTGGGAGTAGGAGCGCGAGTGAGGAGGGCAGGCCAGGCAGGG
TGTGATTGTACGTAATAAGTTGGCATGGGGTGCGTTGTTATCGCCTTTCG
CACTTGCTGCTTTGGGTAATCGAGAGAGGCTGTGAGGAGAAGGCGACCCA
GCGGCCTTGCGGCAGCCTCAGGAGGGAATGGGAGCAAGCAGGGAAAAGCA
GGAATACACGCACGACGCGC
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Coding sequence (CDS) from alignment at CM002458.1:450785..452004-

>rna1910 ID=rna1910|Name=rna1910|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at CM002458.1:450785..452004- (Nannochloropsis gaditana)
GATTACGCTATCAAGATCTGTTCCTAGAGGATCAGGCAGTGACGAAAGCC
ATCCACCATTTGTCTCCGGAAGAGCAAGTGGCCCGGGAGCGACGCATCAA
ACGAGCGATCGAGATCTCTCTGAAGAAGAAGTACCTCCCTGCGGATCTGC
AAAAAATGCAAACCCCTTTGAAACCGTACTTGAGTCACGCACTGGACGAG
GTAGAGGCGGAGGAAACGGAGCGAAAGCTCCTGAACCCGTAGATGGTGTG
CATGTTGCTATCCGGCTGTGCTCACCACCTTTGCCTTTCCTCTGCTTCCT
TCACTGCCCCTTTCAGACGCTCTATAACACGAGTGAGACCAAGCTTATTC
CCAATGTCTGTAATAACTAAGTTCTGGGATGGCTTGCGCTCATCTTACAC
GAAACTGGTCGTCGGAGAACTCAACAACTATGGATTACGCTATCAAGATC
TGTTCCTAGAGGATCAGGCAGTGACGAAAGCCATCCACCATTTGTCTCCG
GAAGAGCAAGTGGCCCGGGAGCGACGCATCAAACGAGCGATCGAGATCTC
TCTGAAGAAGAAGTACCTCCCTGCGGATCTGCAAAAAATGCAAACCCCTT
TGAAACCGTACTTGAGTCACGCACTGGACGAGGTAGAGGCGGAGGAAACG
GAGCGAAAGCTCCTGAACCCGTAGATGGTGTGCATGTTGCTATCCGGCTG
TGCTCACCACCTTTGCCTTTCCTCTGCTTCCTTCACTGCCCCTTTCAGAC
GCTCTATAACACGAGTGAGACCAAGCTTATTCCCAATGTCTGTAATAACT
AAGTTCTGGGATGGCTTGCGCTCATCTTACACGAAACTGGTCGTCGGAGA
ACTCAACAACTATG
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Synonyms
Publications