EWM28744.1, cds1905 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|585111167|gb|EWM28744.1| (mitochondrial trna import complex [Nannochloropsis gaditana]) HSP 1 Score: 297.36 bits (760), Expect = 4.156e-102 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 Query: 1 MVCMLLSGCAHHLCLSSASFTAPFRRSITRVRPSLFPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLFLEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLNP 143 MVCMLLSGCAHHLCLSSASFTAPFRRSITRVRPSLFPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLFLEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLNP Sbjct: 1 MVCMLLSGCAHHLCLSSASFTAPFRRSITRVRPSLFPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLFLEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLNP 143
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|676387507|ref|XP_009037032.1| (hypothetical protein AURANDRAFT_26379, partial [Aureococcus anophagefferens] >gi|323452432|gb|EGB08306.1| hypothetical protein AURANDRAFT_26379, partial [Aureococcus anophagefferens]) HSP 1 Score: 88.1965 bits (217), Expect = 3.448e-20 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0 Query: 60 LNNYGLRYQDLFLE-DQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 LN YGL+Y D+ +E D KA+ +S EE AR RR+KRA +IS KKK LPADLQ++Q PL PY + +DE +A ER+LLN Sbjct: 4 LNQYGLKYDDVKIEQDADYAKALGRISDEEVQARARRMKRAFDISFKKKSLPADLQRLQAPLAPYATPLIDEAKARRVERELLN 87
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|1109199302|ref|XP_019158090.1| (PREDICTED: cytochrome b-c1 complex subunit 7-2-like [Ipomoea nil]) HSP 1 Score: 77.7962 bits (190), Expect = 8.387e-16 Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 0 Query: 42 TKFWDGLRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 +K W + + K + L YGLRY DLF E + +A+ L E AR +R+KRAI++S+K +YLP DLQKMQTP + YL +D VE E ER L Sbjct: 14 SKNW--FAAQHMKAISNRLRKYGLRYDDLFDPKEHLDIKEAMERLPQEVIDARNQRLKRAIDLSMKHEYLPDDLQKMQTPFRSYLHEMVDLVEKERAERTALG 114
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|502124743|ref|XP_004498653.1| (PREDICTED: cytochrome b-c1 complex subunit 7-2-like [Cicer arietinum]) HSP 1 Score: 75.485 bits (184), Expect = 7.670e-15 Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 0 Query: 50 SSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 + + K V L YGLRY DL+ L D + +A++ L E AR R+KRAI++SLK +YLP DLQ MQTP + YL L V+ E+ ER+ L Sbjct: 18 AQHMKAVSNRLRKYGLRYDDLYDPLYDVDIKEALNRLPKEVVDARHARLKRAIDLSLKHEYLPEDLQAMQTPFRGYLQEMLTFVKREKAEREALG 112
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|255077984|ref|XP_002502572.1| (mitochondrial tRNA import complex [Micromonas commoda] >gi|226517837|gb|ACO63830.1| mitochondrial tRNA import complex [Micromonas commoda]) HSP 1 Score: 75.0998 bits (183), Expect = 9.211e-15 Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 0 Query: 52 YTKLVVGELNNYGLRYQDLFLE--DQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 Y V EL+ YGLRY DL E + V +A+ L EE+ R +R+KRA+++S+K YL A++QK QTP K Y+ L+EVEAE ER L Sbjct: 20 YQGWVGAELSKYGLRYDDLLDETMNLDVAEALKRLPQEERDLRMQRLKRAMDLSMKHVYLDAEMQKKQTPFKWYIKPVLEEVEAERDERAALG 112
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|565452947|ref|XP_006286400.1| (hypothetical protein CARUB_v10002241mg [Capsella rubella] >gi|482555106|gb|EOA19298.1| hypothetical protein CARUB_v10002241mg [Capsella rubella]) HSP 1 Score: 75.485 bits (184), Expect = 9.438e-15 Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 0 Query: 39 SVITKFWDG----LRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 S + +F D L + K V L YGLRY DL+ L D + +A++ L E AR +R+KRA+++S+K +YLPADLQ MQTP + YL L V E ER+ L Sbjct: 14 SFLQRFLDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVDARNQRLKRAMDLSMKHEYLPADLQAMQTPFRSYLQDMLALVRRERVEREALG 123
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|848894491|ref|XP_012847285.1| (PREDICTED: cytochrome b-c1 complex subunit 7 [Erythranthe guttata] >gi|604317160|gb|EYU29236.1| hypothetical protein MIMGU_mgv1a016394mg [Erythranthe guttata] >gi|604317161|gb|EYU29237.1| hypothetical protein MIMGU_mgv1a016394mg [Erythranthe guttata] >gi|604317162|gb|EYU29238.1| hypothetical protein MIMGU_mgv1a016394mg [Erythranthe guttata]) HSP 1 Score: 75.0998 bits (183), Expect = 9.445e-15 Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 0 Query: 48 LRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 L + + K + G L+ YGLRY DL+ + + V +A++ L E AR +R+KRA+++S+K +YLP DLQ+MQTP + YL L V+ E+ ER+ L Sbjct: 17 LAAYHMKTLSGRLSKYGLRYDDLYDPMYELDVKEAMNRLPREIVDARNQRLKRAMDLSMKHQYLPDDLQRMQTPFRSYLQEMLAFVKREQAEREALG 113
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|1117491427|ref|XP_019437715.1| (PREDICTED: cytochrome b-c1 complex subunit 7-2-like [Lupinus angustifolius] >gi|1102716417|gb|OIW15068.1| hypothetical protein TanjilG_13995 [Lupinus angustifolius]) HSP 1 Score: 74.3294 bits (181), Expect = 1.916e-14 Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 0 Query: 36 FPMSVITKFWDGLRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 F S I + L + + K + L NYGLRY+DL+ D V +A++ L E AR +R+KRAI++S+K +YLP DLQ +QTP + YL L V+ E ER+ L Sbjct: 4 FLQSFIDPKKNWLAAIHMKTISKRLRNYGLRYEDLYDPYYDLDVKEALNRLPKEIVEARHQRLKRAIDLSMKHQYLPEDLQAVQTPFRSYLRDMLAFVKRERAEREALG 112
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|1137240565|gb|OMP01239.1| (Cytochrome b-c1 complex subunit 7 [Corchorus capsularis]) HSP 1 Score: 73.1738 bits (178), Expect = 6.060e-14 Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0 Query: 48 LRSSYTKLVVGELNNYGLRYQDLF--LEDQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142 L + + K V L NYGLRY+DL+ D + +A++ L E AR +R+KRAI++S+K +YLP +LQ+MQTP + YL L V+ E ER+ L Sbjct: 16 LAALHKKAVTQRLRNYGLRYEDLYDPYYDLDIKEALNRLPREIVDARNQRLKRAIDLSMKHEYLPKELQEMQTPFRGYLQDMLALVKKERAEREALG 112
BLAST of EWM28744.1 vs. NCBI_GenBank
Match: gi|299116133|emb|CBN76042.1| (ubiquinol cytochrome c reductase subunit QCR7 [Ectocarpus siliculosus]) HSP 1 Score: 72.7886 bits (177), Expect = 6.336e-14 Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0 Query: 50 SSYTKLVVGELNNYGLRYQDLFLE-DQAVTKAIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEV 131 + Y + + +LN +GL++ DL +E D V +A+ L+PE+Q+AR+RR RA +ISLKK LP +Q +Q P +PYL + EV Sbjct: 18 TQYKRSMTRKLNAFGLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEV 100 The following BLAST results are available for this feature:
BLAST of EWM28744.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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