EWM28770.1, cds1895 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|585111193|gb|EWM28770.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana]) HSP 1 Score: 463.381 bits (1191), Expect = 3.754e-165 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 Query: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSRWF 227 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSRWF Sbjct: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSRWF 227
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|585111192|gb|EWM28769.1| (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana]) HSP 1 Score: 404.445 bits (1038), Expect = 2.321e-141 Identity = 212/225 (94.22%), Postives = 217/225 (96.44%), Query Frame = 0 Query: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKV E G+T AR+L+ ++ R Sbjct: 1 MREVMSNFREQEEEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRR 225
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|298705324|emb|CBJ49014.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 130.954 bits (328), Expect = 3.493e-34 Identity = 79/193 (40.93%), Postives = 115/193 (59.59%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSL-DAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG------AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225 M+ IFE+Y++EF AL D +S+L TYET K ++ L V Q L+KQM++EVRS DA +K L K+ +Y++ L ++ D RA E++E++ LLG A GG S QR RLL+T++RL Q+R ++++++ M E E + I EL NREKI + KV + GMT AR+LV M R Sbjct: 1 MSSIFEAYDEEFLALTQDIGNNISHLNTYETDAGKKRTQLTHIDALVGQAGDLLKQMEIEVRSTQDAASKKELQGKIASYKKTLQSLRGDYQRAVEKQEREGLLGGREAAFAQGGASQEQRDRLLQTTDRLDGQSRRLEDSKRTMMEIEDTAMEITTELGRNREKIGEVHDKVRDVSGMTTSARRLVHNMNRR 193
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|695387647|ref|XP_009518949.1| (hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae] >gi|348683846|gb|EGZ23661.1| hypothetical protein PHYSODRAFT_295979 [Phytophthora sojae]) HSP 1 Score: 130.183 bits (326), Expect = 5.823e-34 Identity = 77/191 (40.31%), Postives = 116/191 (60.73%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225 MT IF+ Y++E+RAL GD KK+S + +YE DK ++ + +TQ LI+QM+LEVRSLDA T+ LS KV Y++ L + AD + RE+EE++ LLG G S R R+ + ++ + ARK +A+TE+V + IG+EL NREKI++ KV +G+ E AR+ +V M++R Sbjct: 1 MTTIFDGYDEEYRALTGDISKKISEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLLGDRDGNAASAEHRSRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGDELSRNREKIEATHAKV---KGVNEMARRGGNIVGRMSAR 188
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|566026588|gb|ETI49499.1| (hypothetical protein F443_06657 [Phytophthora parasitica P1569] >gi|567963891|gb|ETK89383.1| hypothetical protein L915_06531 [Phytophthora parasitica] >gi|567992599|gb|ETL42789.1| hypothetical protein L916_06472 [Phytophthora parasitica] >gi|568021878|gb|ETL95960.1| hypothetical protein L917_06339 [Phytophthora parasitica] >gi|568052269|gb|ETM49149.1| hypothetical protein L914_06445 [Phytophthora parasitica] >gi|570330273|gb|ETO78221.1| hypothetical protein F444_06728 [Phytophthora parasitica P1976] >gi|570954001|gb|ETP19258.1| hypothetical protein F441_06664 [Phytophthora parasitica CJ01A1] >gi|570988909|gb|ETP47204.1| hypothetical protein F442_06697 [Phytophthora parasitica P10297]) HSP 1 Score: 128.642 bits (322), Expect = 2.404e-33 Identity = 76/191 (39.79%), Postives = 114/191 (59.69%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225 MT IF+ Y++E+R L D KKLS + +YE DK ++ + +TQ LI+QM+LEVRSLDA T+ LS KV Y++ L + AD + RE+EE++ L G G S R R+ + ++ + ARK +A+TE+V + IGEEL+ NREKI++ KV +G+ E AR+ +V M++R Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASAEHRNRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELDRNREKIKATHAKV---KGVNEMARRGGNIVGRMSAR 188
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|675166715|ref|XP_008892242.1| (hypothetical protein PPTG_02754 [Phytophthora parasitica INRA-310] >gi|568108414|gb|ETN23038.1| hypothetical protein PPTG_02754 [Phytophthora parasitica INRA-310]) HSP 1 Score: 128.642 bits (322), Expect = 2.705e-33 Identity = 73/188 (38.83%), Postives = 109/188 (57.98%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225 MT IF+ Y++E+R L D KKLS + +YE DK ++ + +TQ LI+QM+LEVRSLDA T+ LS KV Y++ L + AD + RE+EE++ L G G S R R+ + ++ + ARK +A+TE+V + IGEEL+ NREKI++ KV + M +V M++R Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASAEHRNRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELDRNREKIKATHAKVKDVNEMARRGGNIVGRMSAR 188
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|301114897|ref|XP_002999218.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111312|gb|EEY69364.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 126.331 bits (316), Expect = 1.770e-32 Identity = 76/191 (39.79%), Postives = 114/191 (59.69%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225 MT IF+ Y++E+R L D KKLS + +YE DK ++ + +TQ LI+QM+LEVRSLDA T+ LS KV Y++ L + AD + RE+EE++ L G G S+ R R+ + ++ + ARK +A+TE+V + IGEEL NREKI++ KV +G+ E AR+ +V M++R Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEIASYEDQKDKKKASIVHVGDLLTQATQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASVEHRGRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELGRNREKIEATHAKV---KGVNEMARRGGNIVGRMSTR 188
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|635361663|emb|CCI49442.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 125.561 bits (314), Expect = 3.839e-32 Identity = 74/186 (39.78%), Postives = 104/186 (55.91%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARKLVKEMTSR 225 MT IF+ Y++E+RALA D KK+S++ TYE DK +S L + Q LI+QM+LE RSLD T+ LS KV+ Y + L + D + REREE+D + G + QR R+ +ER+ +D AR+ +AETE V + I EL NREKI + KV M +V M++R Sbjct: 1 MTSIFDGYDEEYRALASDISKKISDVATYEQEPDKKKSSLLHIGDLLKQGNQLIQQMELEARSLDVATRRELSKKVEQYRKSLGSLNEDFKKIREREERDGVFGNRSDPNEDQRNRMELATERMRGSTDKLDAARRTVAETEDVALSITGELARNREKIHAAHTKVKSVNEMARQGASIVGRMSAR 186
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|953488334|emb|CEG47818.1| (vesicle transport through interaction with t-snares 1a [Plasmopara halstedii]) HSP 1 Score: 122.479 bits (306), Expect = 5.524e-31 Identity = 77/191 (40.31%), Postives = 113/191 (59.16%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLGAGGGVSMV--QRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225 MT IF+ Y++E+R LA D KKLS + YE DK + + +TQ LI+QM+LEVRSLDA T+ LS KV Y++ L + AD + RE+EE++ L G G + + R R+ + ++ + ARK +A+TE+V + IGEEL NREKIQS KV +G+ + AR+ +V M++R Sbjct: 1 MTTIFDGYDEEYRTLANDISKKLSEVACYEEQKDKKKVGIVHVGDLLTQASQLIQQMELEVRSLDAATRRELSKKVDQYKKSLASLLADHKKIREKEEREGLFGDRDGNATLAEHRGRMAAATNKMKGTTDKLAAARKEIADTEEVALAIGEELGRNREKIQSTHAKV---KGVNDMARRGGNIVGRMSAR 188
BLAST of EWM28770.1 vs. NCBI_GenBank
Match: gi|1214707281|gb|OWZ18705.1| (hypothetical protein PHMEG_0007154 [Phytophthora megakarya]) HSP 1 Score: 120.553 bits (301), Expect = 4.046e-30 Identity = 73/191 (38.22%), Postives = 111/191 (58.12%), Query Frame = 0 Query: 40 MTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG--AGGGVSMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVGEGQGMTEHARK---LVKEMTSR 225 MT IF+ Y++E+R L D KKLS + +YE DK ++ + +TQ LI+QM+LEVRSLD T+ LS KV Y++ L + AD + RE+EE++ L G G S R R+ + ++ + ARK +A+TE+V + I +EL NREKI++ KV +G+ E AR+ +V M++R Sbjct: 1 MTTIFDGYDEEYRTLTSDISKKLSEVASYEDQKDKKKASIIHVGDLLTQATQLIQQMELEVRSLDTATRRELSKKVDQYKKSLASLSADHKKIREKEEREGLFGDRDGNAASTEYRSRMAAATNKMKGTTDKLTAARKEIADTEEVALAISDELGRNREKIEATHSKV---KGVNEMARRGGNIVGRMSAR 188 The following BLAST results are available for this feature:
BLAST of EWM28770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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