rna1898, rna1898 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1898
Unique Name	rna1898
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	958
Alignment location	CM002458.1:421227..422957 +

Link to JBrowse

Properties


Property Name	Value
Product	sorting nexin-29
Orig transcript id	gnl\|cribi\|Naga_100002g123.4915.mrna
Orig protein id	gnl\|cribi\|Naga_100002g123.4915
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:421227..422957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g123	gene1814	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1898	rna1898-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28796.1	cds1893	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:421227..422957+
coding sequence from alignment at CM002458.1:421227..422957+

mRNA sequence

>rna1898 ID=rna1898|Name=rna1898|organism=Nannochloropsis gaditana|type=mRNA|length=958bp
TCGAAAGGGAGGGACGGCGGGCCATCAAAACCGTTGAATCCTGACACATG
GCCTTCGCTTCCGCGACCTGCGTCCCGCAGCACCTCGCCGACTGCCGGGG
CCCTTGCCAGCACCTCCAAGCTATCTCCGTGCCCCTTGCGCTTTTAACCT
GATCTTAAGCCCTTCTTCTTGACTTTTTAGAAATGTTTTCTCACAGTTCA
GATTTTTTCCGCTTCCTGGAAGCGTCATAAACAGCCGTCACTCCATCTCT
TTGACCCCGCAAGCCCCATCCAAGATACAATTTCTCACAACCAACATCAT
GCAACACCGCCACAACGCCCTCTACTTGACCATTCTTCTGGCATTTTTGG
CTGCTAGCTCGTGTCACGGGTTCATACGCTCCTTTGGGCCATGTTCACCG
ACTGTTAATGCGATTTATCCTGCGACAAGGGCGATACGCCCCTTGCTAGC
ATCTGCTGAGGGCAGCATGGCAGGAGATGTTGGGGCTGTCGAATCATGCA
GACTTAAAATTGAGGCCGCGTTACAACCCGTCGAGTTAATTGTCAAGTCT
TCCAATGACGATCCTAACGGTAGCCACATTGCTTTGCGTGTGGTGTCGGC
GGCGTTCGAGGGCAAGAACAGAGTACAGCGACAGCAAATTGTCTACAAAG
CCATTTGGGAAGAACTTTCAGGCCCAATCCACGCGGTAGACGAGCTGGTA
TGCCGGACACCTGCGGAAGAAAGCATGTAAACGGCCTGATAAATGTATCT
TGGGTTCCAGTCGGGTGTTGGCAGAGGCCTGGTGGAGGACTCTTGTGCTG
ACGCTCGACCGGACGTTGATTGAGTTCATAAAATGCATAGCTTAAATAGC
ATGCCATGGGACAATAGATTCACTGATCAACAAGGTGTATCGTGGGGACA
ACTCGATGTACTGGCTGTCTAAATCTCCTTGTGATTTATTTTAAGGGGGC
CGACACGG

protein sequence of rna1898

>rna1898-protein ID=rna1898-protein|Name=rna1898|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLH
KRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAY
LTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIG
LMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSSDEGLVEQG
RGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVL
VFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSG
SKK

mRNA from alignment at CM002458.1:421227..422957+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1898 ID=rna1898|Name=rna1898|organism=Nannochloropsis gaditana|type=mRNA|length=1731bp|location=Sequence derived from alignment at CM002458.1:421227..422957+ (Nannochloropsis gaditana)
TTGTCTTCCTTGAGGGCAGGTACCggcaaaagaggaaggcccaTTGTTCC
ACCGGCTGCAACCGCAGTGGCGTAGTACGTCGTGCGAGCACGACCGGTAG
AGGCGTGCCACACGGGCAATGCAAAAGGGCTGAGAGGTACCGCCCCTTGG
CATCTTTATGATTTACAGTTACTTAACCAGCTTTCACTCACAATCTTTTG
TACACGCACAGGCTTTGAGTTTGTGCTttcggaggaaggcgggtgtCGAT
TAAAGGCTCTCTCACCCACGGACACCAACTCTAAATTTAAAGTACAATGG
CGCATGGTCTTCAAAATCGGCAGTCCCGACTCTCGCGTATATCATCGCGC
ACTGACACCGAAATCTTTGACGatggcaggggggaaaagcggtAAGTTTG
AAGTACGGCCGTCAGAGTGTGGCATGGTGCCATGAGTATGAGAAAGAAGT
TATGGCGCGATCAATCGACTTTTCGAGGTGATGAATATATCTTGAAGACA
CCAGGAACGAGCGTAATGCGCATGCACGAAGTATCTACTCGTGGAGATTG
TTATCGGGGATGCTGACATATGAAAACAAACCTGGCAGGCACACGATCTA
CTACATGAACATCGAGGTGGGGCGCAACAAGTACTATCTGCACAAGCGGT
ACACGGAGTTTCTCATGCTTCACCAGGTAGATAACAAGTCATTACAAAGT
TAATGAATCTTGACACacacattttcctcctccaatatTTAATCTGTTGC
ACACCTCCCCTCAAATTCAGAAACTTTGCGAGCAGCAATACCCGGAAATT
GAGGACTTCGAATTCCCCAACAAAGTTTGGTTCAACAACTTCTCCGAGGG
GGTGATTGAGTACCGTCGTACACGTTTCGAGGCCTATCTTACTCTGCTTC
TGGAGCTTGTGAACAAATACCCGCCTTTgcgcaaggaggtggagagttTC
CTGGGCGTTCCACAAGTGATTAATCCCCCGAAGCGGTACCCTAAGACCCC
TGTTCCGGGGCGAAAGGTAGTAGAGAAGCCTATTGGTCTCATGGATGATC
CTTCCGACTTTGCAAGCGCGGCTGGCCGGGATTTGGGGGCGAAAGCACCA
ACTGGCGCCGGCGTCTGCTCTAACTCGCAGCGATCCCTTTTCCTGAGCCG
GAAAAGATCTTCCGACGAGGGACTGGTAGAGCAAGGACGAGGTGAATCAC
CGACCATAATAACGACAGGCAAGCGTGTAACATCACCAAGCCCAGCTGAG
AGCTCAGCCGCAGCGGCAGCTGCTAGGGCGTGTGGATACGCCTCCACAAC
CACGATCTTGACTGTCCTCCTCATGTACATCGttcttgtcttccttctgG
CTTTGATAGCGGCATTGGATCCTTCAAATGCCAGACTGAGTGCACTATTG
ATACTCGGCCTCTCGAGCGTGGCCTCCCTAGTGGTAATGCGCGCTTTTCA
CGGCGCTGCCGCCCAGGACGCCAGAAGATTTAGTGGAAGTAAGAAGTGAA
CCCCGTAgagcgtggaagggaggaatgaaaTGGAAATAGTGATGCATATT
CATGTAGTGCATATTTGAGTGTTATACTCTCTAAATTGAAGCGTACGTGA
TGAAAGGAACTGCATTATATGATATTCGTGTCACGTgtagaaggaaaaag
aagttGAGTGCGTATTCATCTCAAACGGCCGCAATGCCTGTGGCTCAACC
AAATTAATCAGGAAAACATCACTCCAGTTCT

Coding sequence (CDS) from alignment at CM002458.1:421227..422957+

>rna1898 ID=rna1898|Name=rna1898|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at CM002458.1:421227..422957+ (Nannochloropsis gaditana)
ATGGCGCATGGTCTTCAAAATCGGCAGTCCCGACTCTCGCGTATATCATC
GCGCACTGACACCGAAATCTTTGACGatggcaggggggaaaagcgGCACA
CGATCTACTACATGAACATCGAGGTGGGGCGCAACAAGTACTATCTGCAC
AAGCGGTACACGGAGTTTCTCATGCTTCACCAGAAACTTTGCGAGCAGCA
ATACCCGGAAATTGAGGACTTCGAATTCCCCAACAAAGTTTGGTTCAACA
ACTTCTCCGAGGGGGTGATTGAGTACCGTCGTACACGTTTCGAGGCCTAT
CTTACTCTGCTTCTGGAGCTTGTGAACAAATACCCGCCTTTgcgcaagga
ggtggagagttTCCTGGGCGTTCCACAAGTGATTAATCCCCCGAAGCGGT
ACCCTAAGACCCCTGTTCCGGGGCGAAAGGTAGTAGAGAAGCCTATTGGT
CTCATGGATGATCCTTCCGACTTTGCAAGCGCGGCTGGCCGGGATTTGGG
GGCGAAAGCACCAACTGGCGCCGGCGTCTGCTCTAACTCGCAGCGATCCC
TTTTCCTGAGCCGGAAAAGATCTTCCGACGAGGGACTGGTAGAGCAAGGA
CGAGGTGAATCACCGACCATAATAACGACAGGCAAGCGTGTAACATCACC
AAGCCCAGCTGAGAGCTCAGCCGCAGCGGCAGCTGCTAGGGCGTGTGGAT
ACGCCTCCACAACCACGATCTTGACTGTCCTCCTCATGTACATCGttctt
gtcttccttctgGCTTTGATAGCGGCATTGGATCCTTCAAATGCCAGACT
GAGTGCACTATTGATACTCGGCCTCTCGAGCGTGGCCTCCCTAGTGGTAA
TGCGCGCTTTTCACGGCGCTGCCGCCCAGGACGCCAGAAGATTTAGTGGA
AGTAAGAAGTGAATGGCGCATGGTCTTCAAAATCGGCAGTCCCGACTCTC
GCGTATATCATCGCGCACTGACACCGAAATCTTTGACGatggcagggggg
aaaagcgGCACACGATCTACTACATGAACATCGAGGTGGGGCGCAACAAG
TACTATCTGCACAAGCGGTACACGGAGTTTCTCATGCTTCACCAGAAACT
TTGCGAGCAGCAATACCCGGAAATTGAGGACTTCGAATTCCCCAACAAAG
TTTGGTTCAACAACTTCTCCGAGGGGGTGATTGAGTACCGTCGTACACGT
TTCGAGGCCTATCTTACTCTGCTTCTGGAGCTTGTGAACAAATACCCGCC
TTTgcgcaaggaggtggagagttTCCTGGGCGTTCCACAAGTGATTAATC
CCCCGAAGCGGTACCCTAAGACCCCTGTTCCGGGGCGAAAGGTAGTAGAG
AAGCCTATTGGTCTCATGGATGATCCTTCCGACTTTGCAAGCGCGGCTGG
CCGGGATTTGGGGGCGAAAGCACCAACTGGCGCCGGCGTCTGCTCTAACT
CGCAGCGATCCCTTTTCCTGAGCCGGAAAAGATCTTCCGACGAGGGACTG
GTAGAGCAAGGACGAGGTGAATCACCGACCATAATAACGACAGGCAAGCG
TGTAACATCACCAAGCCCAGCTGAGAGCTCAGCCGCAGCGGCAGCTGCTA
GGGCGTGTGGATACGCCTCCACAACCACGATCTTGACTGTCCTCCTCATG
TACATCGttcttgtcttccttctgGCTTTGATAGCGGCATTGGATCCTTC
AAATGCCAGACTGAGTGCACTATTGATACTCGGCCTCTCGAGCGTGGCCT
CCCTAGTGGTAATGCGCGCTTTTCACGGCGCTGCCGCCCAGGACGCCAGA
AGATTTAGTGGAAGTAAGAAGTGAATGGCGCATGGTCTTCAAAATCGGCA
GTCCCGACTCTCGCGTATATCATCGCGCACTGACACCGAAATCTTTGACG
atggcaggggggaaaagcgGCACACGATCTACTACATGAACATCGAGGTG
GGGCGCAACAAGTACTATCTGCACAAGCGGTACACGGAGTTTCTCATGCT
TCACCAGAAACTTTGCGAGCAGCAATACCCGGAAATTGAGGACTTCGAAT
TCCCCAACAAAGTTTGGTTCAACAACTTCTCCGAGGGGGTGATTGAGTAC
CGTCGTACACGTTTCGAGGCCTATCTTACTCTGCTTCTGGAGCTTGTGAA
CAAATACCCGCCTTTgcgcaaggaggtggagagttTCCTGGGCGTTCCAC
AAGTGATTAATCCCCCGAAGCGGTACCCTAAGACCCCTGTTCCGGGGCGA
AAGGTAGTAGAGAAGCCTATTGGTCTCATGGATGATCCTTCCGACTTTGC
AAGCGCGGCTGGCCGGGATTTGGGGGCGAAAGCACCAACTGGCGCCGGCG
TCTGCTCTAACTCGCAGCGATCCCTTTTCCTGAGCCGGAAAAGATCTTCC
GACGAGGGACTGGTAGAGCAAGGACGAGGTGAATCACCGACCATAATAAC
GACAGGCAAGCGTGTAACATCACCAAGCCCAGCTGAGAGCTCAGCCGCAG
CGGCAGCTGCTAGGGCGTGTGGATACGCCTCCACAACCACGATCTTGACT
GTCCTCCTCATGTACATCGttcttgtcttccttctgGCTTTGATAGCGGC
ATTGGATCCTTCAAATGCCAGACTGAGTGCACTATTGATACTCGGCCTCT
CGAGCGTGGCCTCCCTAGTGGTAATGCGCGCTTTTCACGGCGCTGCCGCC
CAGGACGCCAGAAGATTTAGTGGAAGTAAGAAGTGA

Synonyms

Publications