EWM28796.1, cds1893 (CDS) Nannochloropsis gaditana

Overview
NameEWM28796.1
Unique Namecds1893
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:421523..421617 +
Alignment locationCM002458.1:421815..421902 +
Alignment locationCM002458.1:421997..422725 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28796.1
Productsorting nexin-29
Orig transcript idgnl|cribi|Naga_100002g123.4915.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:421523..421617 +
CM002458.1supercontigCM002458.1:421815..421902 +
CM002458.1supercontigCM002458.1:421997..422725 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0035091phosphatidylinositol binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001683Phox
Homology
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|585111219|gb|EWM28796.1| (sorting nexin-29 [Nannochloropsis gaditana])

HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query:    1 MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSSDEGLVEQGRGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVLVFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGSKK 303
            MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSSDEGLVEQGRGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVLVFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGSKK
Sbjct:    1 MAHGLQNRQSRLSRISSRTDTEIFDDGRGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINPPKRYPKTPVPGRKVVEKPIGLMDDPSDFASAAGRDLGAKAPTGAGVCSNSQRSLFLSRKRSSDEGLVEQGRGESPTIITTGKRVTSPSPAESSAAAAAARACGYASTTTILTVLLMYIVLVFLLALIAALDPSNARLSALLILGLSSVASLVVMRAFHGAAAQDARRFSGSKK 303          
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|673035588|ref|XP_008871755.1| (AGC protein kinase [Aphanomyces invadans] >gi|574472194|gb|ETV99199.1| AGC protein kinase [Aphanomyces invadans])

HSP 1 Score: 66.2402 bits (160), Expect = 1.470e-8
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 0
Query:   28 RGEKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFLGVPQVINP 130
            R ++R+T++ M++E   + + L KRY+EF  LH+ LC  ++  +    FP K  F++ S  VIE RR  FE Y+  LL L  + P    E+E+FL  P+  NP
Sbjct:   18 RHQQRYTVFMMSVESTDSTWNLCKRYSEFRALHKALCP-RFAAVRSLPFPPKRLFSSLSLRVIEQRRLGFETYMQALLALRPRPP----ELETFLS-PRSANP 114          
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|698797592|ref|XP_009831825.1| (AGC protein kinase [Aphanomyces astaci] >gi|574113616|gb|ETV79106.1| AGC protein kinase [Aphanomyces astaci])

HSP 1 Score: 62.003 bits (149), Expect = 3.476e-7
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   30 EKRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFL 122
            ++R+T++ M++E   + + L KRY+EF  LH+ LC  +Y  +    FP K  F++ S  VIE RR  FE YL  LL L     P   E+E+FL
Sbjct:   22 QQRYTVFMMSVESADSTWNLGKRYSEFRALHKLLCP-RYATVRSQPFPPKRLFSSLSLRVIEQRRVGFETYLQALLAL----RPRPHELEAFL 109          
BLAST of EWM28796.1 vs. NCBI_GenBank
Match: gi|298710236|emb|CBJ26311.1| (similar to Serine/threonine-protein kinase Sgk3 (Serum/glucocorticoid-regulated kinase 3) (Serum/glucocorticoid-regulated kinase-like) isoform 3 [Ectocarpus siliculosus])

HSP 1 Score: 60.8474 bits (146), Expect = 5.933e-7
Identity = 32/92 (34.78%), Postives = 52/92 (56.52%), Query Frame = 0
Query:   31 KRHTIYYMNIEVGRNKYYLHKRYTEFLMLHQKLCEQQYPEIEDFEFPNKVWFNNFSEGVIEYRRTRFEAYLTLLLELVNKYPPLRKEVESFL 122
            +R+T Y + + +G  ++ + KRY++F      L  +Q+ E+  F FP+K  FN F+E   E RRT F+ +L L+  L     P  +EV+ FL
Sbjct:  133 QRYTTYEVMVRMGGRQWSVRKRYSQFDQFRMSL-RKQHKEVGSFRFPHKSKFNTFAEHTKERRRTGFDEFLRLVANLH----PRPEEVDVFL 219          
The following BLAST results are available for this feature:
BLAST of EWM28796.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585111219|gb|EWM28796.1|0.000e+0100.00sorting nexin-29 [Nannochloropsis gaditana][more]
gi|673035588|ref|XP_008871755.1|1.470e-837.86AGC protein kinase [Aphanomyces invadans] >gi|5744... [more]
gi|698797592|ref|XP_009831825.1|3.476e-739.78AGC protein kinase [Aphanomyces astaci] >gi|574113... [more]
gi|298710236|emb|CBJ26311.1|5.933e-734.78similar to Serine/threonine-protein kinase Sgk3 (S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1898rna1898Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications