rna1897, rna1897 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1897
Unique Name	rna1897
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1659
Alignment location	CM002458.1:420168..421125 -

Link to JBrowse

Properties


Property Name	Value
Product	transcription regulator
Orig transcript id	gnl\|cribi\|Naga_100002g124.4896.mrna
Orig protein id	gnl\|cribi\|Naga_100002g124.4896
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:420168..421125 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g124	gene1813	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28777.1	cds1892	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1897	rna1897-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:420168..421125-
coding sequence from alignment at CM002458.1:420168..421125-

mRNA sequence

>rna1897 ID=rna1897|Name=rna1897|organism=Nannochloropsis gaditana|type=mRNA|length=1659bp
ATGGTCATTCAGCCCTTTGTATTTCTCTCTATCGCTAGAGCAGACGAGGC
CGAATATTTAAGCGGACAGAGTCCCATCGAATTCTGTTCCTCGGATAGGG
CACTTCAAGCGCTGCGTCATTTAGCAGCCATGCCTCTCCTTCATGACAGT
AGGACGCGGCCACCGATCTGCTTAAAATTTGGATTGATTATGTGTTTTAC
TGCAATTAAGTGGCTGGGTTCGGCTTCAGGCTTCGTCGCCCCTATAAATC
CTGATTCGCATCGAGCTCGAACAAGTTGGACCGCTGCGACACGTTTGACA
CCACTCCCATCTGCTGCTTCTTCCACACTAAGAATATCCCTATTAAAATG
CGCATCAGCGACCATCGATAAAGCAACAGCCGTATCCGTGGACAACGAAG
AATCTAAAGAAGGCCCCCTTGATCTTTTCGCTTCTCAATTTGAGCAATAC
TATAACCGGGCTCTTCAAGGGAAGCCCGCTCAACTAAAAAGTCTGTTTGC
TACCGGAGCTACCTGGTCGGGCGTGCCGTTATCAGAAGGCAATGGTGATC
TTCAAGGAGTGTTTGACGCGCTGGATCAAGGACGAGCCTTCATGATTGAG
CCTTTCTTCGCGGTGACTGGGTGGGAGGCCACCGACCGAGGCATGAAGTT
GGAGTGGCAGCTCTCGGGCACCTGGCCGTTCCCCTACCGGCCCCGGGTGC
GGGCCGCAGGCACGTCGTTCATCACTCTCGACAAGGGTACGGGAAAGATG
AAGCAAGTAGAGGAGCAGTGGCACAAGCCGTGGTGGCGGGTGGTGCTCGA
ACAAGCCTCGCCCAAAGGCTGGGACCTGTGGCACCTGTACTTGACCCCCC
CGGCAGAGAAACCGCTGTATCGAGTGGTGAAAAAGCTGTCAGCCGTAGAG
ATCCGCGAATACTACCCGCGTTTGGTCATCGAGCTGGAGCAGCATGACGC
CCGGCCCGACGTACAGTACACGGAGTGGGCCTGGATCTTGCCGGACTTCG
CCTTCACGGATGAGCTGAAGCTGCAGGGGCGGGCACAATACCGAGAAACG
TACGTGGCAACTTCACCCGTGGAGAGCTGCGTGGAGAGGGTGGACTGGTC
TCCCCCATTGCCGCCGACAGGGGGCCAGCAGCCCGCCTCGAGCGTGGCGG
CTCGTCGCATCCGGCACCACGTCCCCGTCCCATCCCATCTCGGCCTTGAT
CCGCTCTCCCCCCGCCTTCCGTCGCCATCGGCTAAGGACGTGGATACCGA
GGCTGGGCAGGCGGGAAGGTACGTGCGGCAGCCCAGGAGATTCATGGCTG
TGCGGGCATTTAAGGGGCTGACGCAAACACAGGAGTATGGGGCCTCGCGA
CGTTTGTTGTTGGAGTGGTGTGGCAAGGAGGGTTTGCGGACGGTCAAGAA
CGAGAAGGGGAAATCAAGGGTGTGGGTGCAGCAGCATGGCATGAAGGCAG
GGTTCAATATGCAGGGTAACTTCTGTCTCGGCATCTACGAGCAGGCGTCG
TACTCGGACTGGGGGGAGATCGCCGTGGAGGTGGAGAGGGATCCGAGTTG
GGATAGTCAGGAAAAGGGTAATAGAGGCAGCCACAAACCATGTACGATAA
GGACCGAAAAGGTTAGGAAAGTCAACATGATAGAAGGCATCCCGTGTCGG
CCCCCTTAA

protein sequence of rna1897

>rna1897-protein ID=rna1897-protein|Name=rna1897|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLL
ASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVS
AAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM

mRNA from alignment at CM002458.1:420168..421125-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1897 ID=rna1897|Name=rna1897|organism=Nannochloropsis gaditana|type=mRNA|length=958bp|location=Sequence derived from alignment at CM002458.1:420168..421125- (Nannochloropsis gaditana)
TCGAAAGGGAGGGACGGCGGGCCATCAAAACCGTTGAATCCTGACACATG
GCCTTCGCTTCCGCGACCTGCGTCCCGCAGCACCTCGCCGACTGCCGGGG
CCCTTGCCAGCACCTCCAAGCTATCTCCGTGCCCCTTGCGCTTTTAACCT
GATCTTAAGCCCTTCTTCTTGACTTTTTAGAAATGTTTTCTCACAGTTCA
GATTTTTTCCGCTTCCTGGAAGCGTCATAAACAGCCGTCACTCCATCTCT
TTGACCCCGCAAGCCCCATCCAAGATACAATTTCTCACAACCAACATCAT
GCAACACCGCCACAACGCCCTCTACTTGACCATTCTTCTGGCATTTTTGG
CTGCTAGCTCGTGTCACGGGTTCATACGCTCCTTTGGGCCATGTTCACCG
ACTGTTAATGCGATTTATCCTGCGACAAGGGCGATACGCCCCTTGCTAGC
ATCTGCTGAGGGCAGCATGGCAGGAGATGTTGGGGCTGTCGAATCATGCA
GACTTAAAATTGAGGCCGCGTTACAACCCGTCGAGTTAATTGTCAAGTCT
TCCAATGACGATCCTAACGGTAGCCACATTGCTTTGCGTGTGGTGTCGGC
GGCGTTCGAGGGCAAGAACAGAGTACAGCGACAGCAAATTGTCTACAAAG
CCATTTGGGAAGAACTTTCAGGCCCAATCCACGCGGTAGACGAGCTGGTA
TGCCGGACACCTGCGGAAGAAAGCATGTAAACGGCCTGATAAATGTATCT
TGGGTTCCAGTCGGGTGTTGGCAGAGGCCTGGTGGAGGACTCTTGTGCTG
ACGCTCGACCGGACGTTGATTGAGTTCATAAAATGCATAGCTTAAATAGC
ATGCCATGGGACAATAGATTCACTGATCAACAAGGTGTATCGTGGGGACA
ACTCGATGTACTGGCTGTCTAAATCTCCTTGTGATTTATTTTAAGGGGGC
CGACACGG

Coding sequence (CDS) from alignment at CM002458.1:420168..421125-

>rna1897 ID=rna1897|Name=rna1897|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002458.1:420168..421125- (Nannochloropsis gaditana)
ATGCAACACCGCCACAACGCCCTCTACTTGACCATTCTTCTGGCATTTTT
GGCTGCTAGCTCGTGTCACGGGTTCATACGCTCCTTTGGGCCATGTTCAC
CGACTGTTAATGCGATTTATCCTGCGACAAGGGCGATACGCCCCTTGCTA
GCATCTGCTGAGGGCAGCATGGCAGGAGATGTTGGGGCTGTCGAATCATG
CAGACTTAAAATTGAGGCCGCGTTACAACCCGTCGAGTTAATTGTCAAGT
CTTCCAATGACGATCCTAACGGTAGCCACATTGCTTTGCGTGTGGTGTCG
GCGGCGTTCGAGGGCAAGAACAGAGTACAGCGACAGCAAATTGTCTACAA
AGCCATTTGGGAAGAACTTTCAGGCCCAATCCACGCGGTAGACGAGCTGG
TATGCCGGACACCTGCGGAAGAAAGCATGTAA

Synonyms

Publications