EWM28777.1, cds1892 (CDS) Nannochloropsis gaditana

Overview
NameEWM28777.1
Unique Namecds1892
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:420396..420827 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28777.1
Producttranscription regulator
Orig transcript idgnl|cribi|Naga_100002g124.4896.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:420396..420827 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002634BolA
Homology
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|585111200|gb|EWM28777.1| (transcription regulator [Nannochloropsis gaditana])

HSP 1 Score: 295.434 bits (755), Expect = 2.380e-101
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143
            MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM
Sbjct:    1 MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1072230842|gb|OEU15575.1| (bola-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 112.464 bits (280), Expect = 2.718e-29
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 0
Query:   56 SMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEE 141
            S A D   VE+C  KI  AL+  ++ V  + DDPNGSHI++ VVS  FEGK  +QRQQ+VYKAIWEEL GP+HAVD ++C+TP EE
Sbjct:   40 SSAPDTSVVETCTQKIGDALETTDVKVTGAYDDPNGSHISIEVVSPLFEGKRAMQRQQLVYKAIWEELKGPVHAVDSMICKTPDEE 125          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1210529012|dbj|GAX12158.1| (hypothetical protein FisN_1Hh083 [Fistulifera solaris])

HSP 1 Score: 111.309 bits (277), Expect = 8.164e-29
Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = 0
Query:    8 LYLTILLAFLAASSCHGFIRSFGPCSPTVNA-IYPATRAIRPLLASAEGSMAGDVGA--VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
            L LT + +F AA       RSF       +A + PA  + R        S++G+ G   V+ C+ KI+ ALQ   + V  + DDPNGSHI++ VVS+ F GK  VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E
Sbjct:    6 LLLTTMFSFRAA-------RSFSVLRHHTSAQLLPAKASFRLF------SVSGEAGTSIVDICQKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFAGKRAVQRQQLVYKAIWEELQGPVHAVDAMVCKTPDE 128          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|219112109|ref|XP_002177806.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410691|gb|EEC50620.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.383 bits (272), Expect = 2.560e-28
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 0
Query:   42 ATRAIRPLL--------ASAEGSMAG--DVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
            A+RA RP++        A+ + S A   D   V++C+ KI+ AL   ++ V  + DDPNGSHI++ VV+ AF GK  VQRQQ+VYKAIWEEL GP+HAVD ++C+TP E
Sbjct:    5 ASRAFRPVVRVAWARNTATRQFSTANGPDTTIVQTCQQKIQDALSATDVKVTGAYDDPNGSHISIEVVAEAFAGKRPVQRQQMVYKAIWEELKGPVHAVDAMICKTPDE 113          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1210519825|dbj|GAX21254.1| (hypothetical protein FisN_1Lh083 [Fistulifera solaris])

HSP 1 Score: 107.842 bits (268), Expect = 1.684e-27
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 0
Query:    8 LYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGA--VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
            L LT +++F AA S    +R   P +P ++A     +A   L      S++G+ G   V+ C  KI+ ALQ   + V  + DDPNGSHI++ VVS+ F GK  VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E
Sbjct:    6 LLLTTMISFRAAQSF-SVLRHHTP-APMLHA-----KASFRLF-----SVSGEAGTSLVDICHKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFVGKRAVQRQQLVYKAIWEELQGPVHAVDSMVCKTPDE 128          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1189386044|gb|OSX73176.1| (hypothetical protein BU14_0371s0009 [Porphyra umbilicalis])

HSP 1 Score: 100.908 bits (250), Expect = 1.327e-24
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 0
Query:   64 VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEES 142
            V +   KI  A+ P  L+V  S  DPNGSH+ + VVS AFEG N V+R ++VY AIWEELSGPIHAVD+LV +TPAE S
Sbjct:   65 VATVERKITEAINPTSLVVTPSYGDPNGSHVTINVVSEAFEGLNVVKRHKLVYGAIWEELSGPIHAVDQLVTQTPAEAS 143          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|551677508|ref|XP_005841507.1| (hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712] >gi|428185675|gb|EKX54527.1| hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712])

HSP 1 Score: 98.9821 bits (245), Expect = 2.392e-24
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0
Query:   70 KIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143
            KI + L+PV+L V  +  DPNGSH+ + VVS AFEGK  VQRQQ+VYK IWEE+ G IHAVD++ C+TPAE  M
Sbjct:   20 KITSELKPVKLEVIPAYGDPNGSHVTINVVSQAFEGKRAVQRQQMVYKVIWEEMQGAIHAVDQMKCQTPAEAGM 93          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|545713189|ref|XP_005708898.1| (hypothetical protein Gasu_04670 [Galdieria sulphuraria] >gi|452825381|gb|EME32378.1| hypothetical protein Gasu_04670 [Galdieria sulphuraria])

HSP 1 Score: 87.8113 bits (216), Expect = 4.428e-20
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   64 VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
            VE    K+  AL P  L V  + DDPNGSH+++RVVS  FE    ++R Q+VYKAIW+EL GP+HAVD +  +TP E
Sbjct:    9 VERVEQKLREALSPKFLQVTPAFDDPNGSHVSIRVVSEKFENLTSLKRHQLVYKAIWDELQGPVHAVDSIDAKTPKE 85          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|551550304|ref|XP_005762682.1| (hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516] >gi|485611788|gb|EOD10253.1| hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 86.2705 bits (212), Expect = 5.531e-19
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   60 DVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELS---GPIHAVDELVCRTPAE 140
            D   V+ C   +EAAL+P  + V  + DDPNGSHI +  VS  FEGK  + RQQ+V+KAIW E+    G +HAVD +V ++P+E
Sbjct:   42 DPTVVDRCTAALEAALEPTSVKVMGAYDDPNGSHITIECVSPKFEGKRSLARQQMVFKAIWAEMDGQGGTVHAVDTMVLKSPSE 125          
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|116783960|gb|ABK23160.1| (unknown [Picea sitchensis])

HSP 1 Score: 82.8037 bits (203), Expect = 3.188e-17
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   46 IRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
            +R    S  GSM  D   +++ + KI+  L   E+IVK +  D  G H+++ V+S+AFEG++ V RQ++VYKAIWEEL   +HAVD++  +TPAE
Sbjct:   76 VRSTEVSDSGSM--DSPMMQAMQNKIKEQLNADEVIVKDAYGD--GRHVSIDVISSAFEGQSHVNRQRMVYKAIWEELQNTVHAVDQMTTKTPAE 166          
The following BLAST results are available for this feature:
BLAST of EWM28777.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111200|gb|EWM28777.1|2.380e-101100.00transcription regulator [Nannochloropsis gaditana][more]
gi|1072230842|gb|OEU15575.1|2.718e-2958.14bola-like protein [Fragilariopsis cylindrus CCMP11... [more]
gi|1210529012|dbj|GAX12158.1|8.164e-2946.32hypothetical protein FisN_1Hh083 [Fistulifera sola... [more]
gi|219112109|ref|XP_002177806.1|2.560e-2849.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210519825|dbj|GAX21254.1|1.684e-2746.67hypothetical protein FisN_1Lh083 [Fistulifera sola... [more]
gi|1189386044|gb|OSX73176.1|1.327e-2459.49hypothetical protein BU14_0371s0009 [Porphyra umbi... [more]
gi|551677508|ref|XP_005841507.1|2.392e-2460.81hypothetical protein GUITHDRAFT_100004 [Guillardia... [more]
gi|545713189|ref|XP_005708898.1|4.428e-2051.95hypothetical protein Gasu_04670 [Galdieria sulphur... [more]
gi|551550304|ref|XP_005762682.1|5.531e-1947.62hypothetical protein EMIHUDRAFT_452727 [Emiliania ... [more]
gi|116783960|gb|ABK23160.1|3.188e-1744.21unknown [Picea sitchensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1897rna1897Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications