EWM28777.1, cds1892 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|585111200|gb|EWM28777.1| (transcription regulator [Nannochloropsis gaditana]) HSP 1 Score: 295.434 bits (755), Expect = 2.380e-101 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143
MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM
Sbjct: 1 MQHRHNALYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1072230842|gb|OEU15575.1| (bola-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 112.464 bits (280), Expect = 2.718e-29 Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 0
Query: 56 SMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEE 141
S A D VE+C KI AL+ ++ V + DDPNGSHI++ VVS FEGK +QRQQ+VYKAIWEEL GP+HAVD ++C+TP EE
Sbjct: 40 SSAPDTSVVETCTQKIGDALETTDVKVTGAYDDPNGSHISIEVVSPLFEGKRAMQRQQLVYKAIWEELKGPVHAVDSMICKTPDEE 125
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1210529012|dbj|GAX12158.1| (hypothetical protein FisN_1Hh083 [Fistulifera solaris]) HSP 1 Score: 111.309 bits (277), Expect = 8.164e-29 Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = 0
Query: 8 LYLTILLAFLAASSCHGFIRSFGPCSPTVNA-IYPATRAIRPLLASAEGSMAGDVGA--VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
L LT + +F AA RSF +A + PA + R S++G+ G V+ C+ KI+ ALQ + V + DDPNGSHI++ VVS+ F GK VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E
Sbjct: 6 LLLTTMFSFRAA-------RSFSVLRHHTSAQLLPAKASFRLF------SVSGEAGTSIVDICQKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFAGKRAVQRQQLVYKAIWEELQGPVHAVDAMVCKTPDE 128
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|219112109|ref|XP_002177806.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410691|gb|EEC50620.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 109.383 bits (272), Expect = 2.560e-28 Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 0
Query: 42 ATRAIRPLL--------ASAEGSMAG--DVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
A+RA RP++ A+ + S A D V++C+ KI+ AL ++ V + DDPNGSHI++ VV+ AF GK VQRQQ+VYKAIWEEL GP+HAVD ++C+TP E
Sbjct: 5 ASRAFRPVVRVAWARNTATRQFSTANGPDTTIVQTCQQKIQDALSATDVKVTGAYDDPNGSHISIEVVAEAFAGKRPVQRQQMVYKAIWEELKGPVHAVDAMICKTPDE 113
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1210519825|dbj|GAX21254.1| (hypothetical protein FisN_1Lh083 [Fistulifera solaris]) HSP 1 Score: 107.842 bits (268), Expect = 1.684e-27 Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 0
Query: 8 LYLTILLAFLAASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGA--VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
L LT +++F AA S +R P +P ++A +A L S++G+ G V+ C KI+ ALQ + V + DDPNGSHI++ VVS+ F GK VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E
Sbjct: 6 LLLTTMISFRAAQSF-SVLRHHTP-APMLHA-----KASFRLF-----SVSGEAGTSLVDICHKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFVGKRAVQRQQLVYKAIWEELQGPVHAVDSMVCKTPDE 128
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|1189386044|gb|OSX73176.1| (hypothetical protein BU14_0371s0009 [Porphyra umbilicalis]) HSP 1 Score: 100.908 bits (250), Expect = 1.327e-24 Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 0
Query: 64 VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEES 142
V + KI A+ P L+V S DPNGSH+ + VVS AFEG N V+R ++VY AIWEELSGPIHAVD+LV +TPAE S
Sbjct: 65 VATVERKITEAINPTSLVVTPSYGDPNGSHVTINVVSEAFEGLNVVKRHKLVYGAIWEELSGPIHAVDQLVTQTPAEAS 143
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|551677508|ref|XP_005841507.1| (hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712] >gi|428185675|gb|EKX54527.1| hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712]) HSP 1 Score: 98.9821 bits (245), Expect = 2.392e-24 Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0
Query: 70 KIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143
KI + L+PV+L V + DPNGSH+ + VVS AFEGK VQRQQ+VYK IWEE+ G IHAVD++ C+TPAE M
Sbjct: 20 KITSELKPVKLEVIPAYGDPNGSHVTINVVSQAFEGKRAVQRQQMVYKVIWEEMQGAIHAVDQMKCQTPAEAGM 93
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|545713189|ref|XP_005708898.1| (hypothetical protein Gasu_04670 [Galdieria sulphuraria] >gi|452825381|gb|EME32378.1| hypothetical protein Gasu_04670 [Galdieria sulphuraria]) HSP 1 Score: 87.8113 bits (216), Expect = 4.428e-20 Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 0
Query: 64 VESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
VE K+ AL P L V + DDPNGSH+++RVVS FE ++R Q+VYKAIW+EL GP+HAVD + +TP E
Sbjct: 9 VERVEQKLREALSPKFLQVTPAFDDPNGSHVSIRVVSEKFENLTSLKRHQLVYKAIWDELQGPVHAVDSIDAKTPKE 85
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|551550304|ref|XP_005762682.1| (hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516] >gi|485611788|gb|EOD10253.1| hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 86.2705 bits (212), Expect = 5.531e-19 Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0
Query: 60 DVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELS---GPIHAVDELVCRTPAE 140
D V+ C +EAAL+P + V + DDPNGSHI + VS FEGK + RQQ+V+KAIW E+ G +HAVD +V ++P+E
Sbjct: 42 DPTVVDRCTAALEAALEPTSVKVMGAYDDPNGSHITIECVSPKFEGKRSLARQQMVFKAIWAEMDGQGGTVHAVDTMVLKSPSE 125
BLAST of EWM28777.1 vs. NCBI_GenBank
Match: gi|116783960|gb|ABK23160.1| (unknown [Picea sitchensis]) HSP 1 Score: 82.8037 bits (203), Expect = 3.188e-17 Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 0
Query: 46 IRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAE 140
+R S GSM D +++ + KI+ L E+IVK + D G H+++ V+S+AFEG++ V RQ++VYKAIWEEL +HAVD++ +TPAE
Sbjct: 76 VRSTEVSDSGSM--DSPMMQAMQNKIKEQLNADEVIVKDAYGD--GRHVSIDVISSAFEGQSHVNRQRMVYKAIWEELQNTVHAVDQMTTKTPAE 166 The following BLAST results are available for this feature:
BLAST of EWM28777.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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