rna1888, rna1888 (mRNA) Nannochloropsis gaditana

Overview
Namerna1888
Unique Namerna1888
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2988
Alignment locationCM002458.1:397228..398239 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g134.4789.mrna
Orig protein idgnl|cribi|Naga_100002g134.4789
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:397228..398239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g134gene1804Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1888rna1888-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28670.1cds1883Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1888 ID=rna1888|Name=rna1888|organism=Nannochloropsis gaditana|type=mRNA|length=2988bp
TCTGTCAGGCCTGGTAGGTCAAGAACTTCATCAGCAAGGGCTTCCTTGGT
ATAGGATGCGTTAAATGAGGATGAAACATTTTGAGCTTTGTAAGCGGCCG
GCACGGACGAGGCGCGCAAAGACTTGAACATGGGTCCGGAGGCTCCCGAC
AATTTATTCCCCCTACTTGGTAATGAAACCATCCCAGGGTAACTGGTGCT
GCTCGCAGTGATGATACGGCTAGAAAGAAAACGACTTGGGACGTTCCCGA
ACTTCGGCCGGCCGTGGTGTATGACAACAAGCACCGCTCCAAGAAAGCCT
AGCATGCCTGTCATCACGGCTACCAGAGCGGATCGCGAGCCGCCATTGCG
GGCACGGCGGCTGTTATTTCGTAGATCTTTTGCTGACGGAGCGCTAATAG
ACATTATTTTTTGTTTTCTAAAATGTGTTTCGTGTGAAGTCGTGCATGAG
TGGACGGGCAGCGGTAAGTGATAGTCGTGTTGAGTGATGCGCAGTAACAA
CTTGACGCAGACAATAAAGCTTGTTCCGCTTACGGGAGAAGTCACCAAAG
TAATTCTACCCACCGTTCTTTTCCAAAACCTGATATCTCCATTTAATCTG
CCCAGCATGAAAGCAAGGACACGAAATATAAAAATGGGAGACCCATTTAA
GAGGGGTATGTGAAACGGTTCAGGACTTCAACGGTTTGGATTTTTGAATT
TTGCAGGAGCCCGCCGACATGTTCTGGTCGGGTGCCGACCCTTCCACGTT
TGCCTTCTTATAATGTGTGGGAAATAAAAAATAATACTCATTCGCGACCG
TTGTGGTGGTCCTCTGCCTCCCGCGCTTCAGTACAACAACACTCAATTCC
GTAGTCTTGTGCAGGCGGTGGCGGACAGTGAAGCAGCGGCAAGATAGCCA
CATCACCATCGAGGTGGCCGTCGCTCTCGCCGAGAACCCCAGTCAAAAGC
ATGCAGACACTTTCCGTCCCATATTCTTATGAAGACTACTACCAGGCAGG
TAGTTGTGTCCATTTCAAAGATGAACTTGAGGAAGTTAGTCCTTTATCGA
CGCCCTCTATAGAGTTCACCAGTGTTGGGAGAAAGCGACATGCCGCGGTC
TTCTTGATCGGCGCTTTCGTCGTAGCAGGCATATTGCTTGTCGCCGCGCG
CAATTTGAAGAGTTCCTCGGCCTATGGCAAAGCGCATCGAATGTCAGGCC
ACGATGGCTCGCATTTTTCTTCTTCAATGCTGTCGAGGACGCCGTTTACT
TTATTGGCTCTCAATTACACCGCTGCAGCGCTGGCTGACGAGATAGTTGC
CTTGCCGGGTCTCCCAGAACCGGATTCTTCATTTCGACAGTTCGCAGGTT
ATTTGGATATCTCTCCCACAAAGCACATTTTCTACTGGTACGTTGAACCA
AATAGAAATTCCAGCGTTCTAGATTGGGCTGCGGTGCCGTTGTCATTGTG
GACAAACGGGGGTCCCGGGTGCAGTGGTCTGTTTGGATACTTCGCTGAGC
ATGGCCCGTTCCGAGCCACCCAACACGGAAGCGGCCTGGAAGTTAACCCC
TTCTCGTGGAACACACTGAGCCACATGCTGTATGTCGAGATTCCAGTCGG
GGTGGGGTTTAGCTACTCGGAGGACGAGACGGAATATTACATTGGGGACG
AGCAGACCGCCCGCGACAATTTACTCGTCTTGCAAACATTCTTCGCCCGC
TTCCCGCACTTGCGAAGCTCGGATCTCTATCTCACGTCTGAGTCGTACGG
CGGGCATTACATTCCTACGCTAGCGCGTGAGATTATTCGCAACAACCGTA
AGCGCGCCGACTCGTTGGCAGCCAGCGAGACAGGAGCCGTTGGGAAAACG
CGGGGACAGAGCACTCCTCAAGTCGTCCGCCTGGATAGAATTAGTCCCGC
GAGTGACGACCAGTACATCAATTTGCGAGGCCTTGCCATCGGGAACCCTT
TCACGGACCCGGTCGAAAACGTGGTGGGGATGATCGATGCCCTGGACGGC
CACGACGTGATCCCCGAGTCCCTCTTTGAGCGCTGGCTGACAACCTGTAG
GGCCCAAGGGGCGGCTGCGGCCGATGTCTTCTATTCGCGCCCGTGCCAGG
ACCTGCAGAAGGAGATGTGGCGCGAGGTAGGGCAGGGTGTCGACCCGTAC
GCGTTGGACTGGCCCCTGTGTGCGGATGACCGGAAAAGCAGAGGAGGGAA
ACAGCGGAAAGCATTGCTGCAGCATCTTTGGCGCTTACACACCTCAGAGA
CTTTTCGGGCAGACCGCGGCGAGTCATCGTCATCGTCTCTCGCTTCGACC
GCACAGGCTGTTCTGAAACAGGCTCCTTGGGGCCAGGACAAAGAGGGGCT
ACCCTTTCAGCCGTGTGAAGATGATTATCTGAGCGCCTACTTGAACAGGG
CAGACGTGAAGCGCATCATTCATGCCAAGGAGCGGATCAACTGGGAGGAC
TGCACGAACTGCGTGCGCTACGAGGCCCACGACCAGGATGTTTACATGGA
GCCAGTATATCGTTACCTGATGGACGAGAATAAAGACGCCGGACTTCGCG
TGTTGCTTTACTCAGGTGACGATGATTCCGTGTGTGGACCACGGGGCACA
GAGATGTGGCTGAGGACGATGGGGTGGAAGGTAACAGAGCCGTGGCGGGC
ATGGACGGTGAAGGAGGAAGTAGCTGGATACATGAAGACTTATGAGAACG
GATTGGTGTTCAGCACAGTGCTGGGCGCGGGCCACGAAGTACCCGCATTC
ACCCCGGAGGCTGCTTGGGAGCTCTTTGGGGCATTCTTGAAAGGCAACAT
CTCGCACTTGCGCGCCAAGTGAATGGGGGACCCGTCATGCAAAGAGGGAG
AGTAATGAAGGTTGGCTGCAAAGTGTTCGATGTATTTTTATCGAGGGGAA
TTTCTGTGCTTAATGATATCAGTGGATTTATACATCCATAGTAATTAACT
CGGTCAAGAAATTATATATAACGTTGAGTTCCAAAAAA
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protein sequence of rna1888

>rna1888-protein ID=rna1888-protein|Name=rna1888|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MSRRNVPERASATAQEKAALTSTNTAAVDVDDLDAWGVFKKALIFQGQWN
KETFPQFLDVIYWFRQVLALVIGVVWGRAASRGGTAIMSFAALVRRLRKS
T
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mRNA from alignment at CM002458.1:397228..398239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1888 ID=rna1888|Name=rna1888|organism=Nannochloropsis gaditana|type=mRNA|length=1012bp|location=Sequence derived from alignment at CM002458.1:397228..398239- (Nannochloropsis gaditana)
ACGACTGAGTCTACACCACTTACGTCCCACGTTCCAGACTTCATGTCCAG
AAGAAATGTTCCGGAAAGGGCCTCCGCGACCGCGCAGGAGAAGGCCGCCC
TAACATCTACCAACACGGCGGCGGTGGACGTCGACGACCTAGACGCGTGG
GGTGTCTTTAAGAAAGCCCTCATTTTCCAAGGCCAGTGGAATAAGGTAAT
GTTTCGGGGATAGGAGGGTTGCATTTTGAGTATCATGAGAGAGTGACAGC
ATGAAGTTGCAACCAAAATCGGCACTAATTGTGCGAGCACCTGCTTGTTC
GAGTGCCGACATGCACAATTTATCAGGTCGAAACAAAGCGTTTCCCGCTC
CGTTCTTACATCGGCTCCCCCTGTGTTTGGATTCTATTTCGCAGGAGACA
TTTCCGCAATTCCTGGACGTGATTTACTGGTTCCGACAGGTCCTGGCTCT
TGTGATAGGGGTGGTTTGGGGCCGCGCGGCGTCAAGAGGAGGCACTGCCA
TCATGTCCTTTGCAGCCTTGGTAAGACGCTTGAGAAAAAGTACATAAACC
TAGTGTGTGCCGCGTTACTTCGGCAGCGAGATGCTACAACACGTCCTTCG
GACTCTCCTCACCCCAGCCCTCCCCATCTACCCGCAGCAACTCATGCTCC
CTCGGATGTACTATCAGAAGTGGGCTAGAGTCGACGAAGAAGATTTTGAT
GCCGTCGCCCTTCTTAAAGAGGGATTGCAGCCTGCTGTGGGCATATTTTT
CGCAAGCTGGGTCTTGACGTACACGCTGTGCCACGTGAATGCGTCAGTCC
CCGATGTGGCGGGCTCCTCATGAATCGGAGTCGATTCTCGGGGGCTTGCT
GTCTGCACGCGCGGGTGCAAGGGGGACGGCGAATAAAGTTAAATGCAAAA
GTACAAAGAAACAAAGAAAACGTTTTGTCTCCCTGACTCGAGTGTCCAGG
GCAGTCTGTCTCTTCCTTGGAAAAACAGTCAGACAGAGCATCTGCCGCGG
GCTTCGTCTAGG
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Coding sequence (CDS) from alignment at CM002458.1:397228..398239-

>rna1888 ID=rna1888|Name=rna1888|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at CM002458.1:397228..398239- (Nannochloropsis gaditana)
GAGACATTTCCGCAATTCCTGGACGTGATTTACTGGTTCCGACAGGTCCT
GGCTCTTGTGATAGGGGTGGTTTGGGGCCGCGCGGCGTCAAGAGGAGGCA
CTGCCATCATGTCCTTTGCAGCCTTGGTAAGACGCTTGAGAAAAAGTACA
TAAATGTCCAGAAGAAATGTTCCGGAAAGGGCCTCCGCGACCGCGCAGGA
GAAGGCCGCCCTAACATCTACCAACACGGCGGCGGTGGACGTCGACGACC
TAGACGCGTGGGGTGTCTTTAAGAAAGCCCTCATTTTCCAAGGCCAGTGG
AATAAGGAGACATTTCCGCAATTCCTGGACGTGATTTACTGGTTCCGACA
GGTCCTGGCTCTTGTGATAGGGGTGGTTTGGGGCCGCGCGGCGTCAAGAG
GAGGCACTGCCATCATGTCCTTTGCAGCCTTGGTAAGACGCTTGAGAAAA
AGTACATAAATGTCCAGAAGAAATGTTCCGGAAAGGGCCTCCGCGACCGC
GCAGGAGAAGGCCGCCCTAACATCTACCAACACGGCGGCGGTGGACGTCG
ACGACCTAGACGCGTGGGGTGTCTTTAAGAAAGCCCTCATTTTCCAAGGC
CAGTGGAATAAG
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Synonyms
Publications