EWM28682.1, cds1844 (CDS) Nannochloropsis gaditana

Overview
NameEWM28682.1
Unique Namecds1844
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:291097..291170 +
Alignment locationCM002458.1:291356..291475 +
Alignment locationCM002458.1:291663..291735 +
Alignment locationCM002458.1:291942..292121 +
Alignment locationCM002458.1:292323..292394 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28682.1
Productdtdp-glucose -dehydratase
Orig transcript idgnl|cribi|Naga_100002g174.4801.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:291097..291170 +
CM002458.1supercontigCM002458.1:291356..291475 +
CM002458.1supercontigCM002458.1:291663..291735 +
CM002458.1supercontigCM002458.1:291942..292121 +
CM002458.1supercontigCM002458.1:292323..292394 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase_N
Homology
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|585111105|gb|EWM28682.1| (dtdp-glucose -dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 355.91 bits (912), Expect = 2.057e-124
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQPHVEESNRS 172
            MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQPHVEESNRS
Sbjct:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQPHVEESNRS 172          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|585110039|gb|EWM27762.1| (udp-glucuronic acid decarboxylase 1 [Nannochloropsis gaditana])

HSP 1 Score: 275.404 bits (703), Expect = 4.286e-92
Identity = 128/164 (78.05%), Postives = 147/164 (89.63%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQP 164
            ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGK+ITIYG+G QTRSFQYV+DLV+GL KLMNSDY LPVNLGNP+EY+VKDFALLV+ELV  + S IVH+PATKDDPAKRKPDI +A   LGW+P V VR+GL+KT+ YFR ELE+TGEI PTGP+A RP+P
Sbjct:   11 VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 174          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|553190626|ref|XP_005855230.1| (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526] >gi|422293832|gb|EKU21132.1| UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 276.559 bits (706), Expect = 3.627e-88
Identity = 128/164 (78.05%), Postives = 147/164 (89.63%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQP 164
            ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGK+ITIYG+G QTRSFQYV+DLV+GL KLMNSDY LPVNLGNP+EY+VKDFALLV+ELV  + S IVH+PATKDDPAKRKPDI +A   LGW+P V VR+GL+KT+ YFR ELE+TGEI PTGP+A RP+P
Sbjct:  325 VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 488          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|298708329|emb|CBJ48392.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 256.914 bits (655), Expect = 4.928e-81
Identity = 120/163 (73.62%), Postives = 144/163 (88.34%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
            MEVRVARIFNTFGPRMHPNDGRVVSNFIIQA+QGK+ITIYG G QTRSFQYVDDLV GL+ LMN++Y  PVN+GNPDEY+VKDFA L++    +T S+I+ +  TKDDP KRKPDIT+AKKELGWEPTV+V+DGL +TI+YFR EL++TGEI PTGP+A++P+
Sbjct:  312 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQAIQGKDITIYGDGSQTRSFQYVDDLVRGLIALMNNNYSGPVNIGNPDEYTVKDFAELIKSSTEST-SKIIFMDGTKDDPNKRKPDITLAKKELGWEPTVAVKDGLVETIKYFRGELKKTGEIIPTGPDASKPR 473          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|219130674|ref|XP_002185484.1| (nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403015|gb|EEC42971.1| nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 248.44 bits (633), Expect = 2.364e-77
Identity = 116/163 (71.17%), Postives = 139/163 (85.28%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
            ++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQ KN+TIYG+G+QTRSFQYV DLV GL  LMN +Y+LPVNLGNP+EYSVKDFA  ++EL ++T S I+ LP ++DDP++R+PDIT AK+ELGWEP V V+ GL KTIEYF + LE  GEI PTGP AA+P+
Sbjct:  352 VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQNKNMTIYGEGKQTRSFQYVTDLVDGLYALMNGNYDLPVNLGNPEEYSVKDFATYIQELTKST-SDIIFLPKSEDDPSQRRPDITTAKRELGWEPQVKVQKGLEKTIEYFARVLESAGEIIPTGPGAAKPE 513          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|224005937|ref|XP_002291929.1| (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >gi|220972448|gb|EED90780.1| dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 242.276 bits (617), Expect = 2.036e-76
Identity = 109/163 (66.87%), Postives = 136/163 (83.44%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
            + +R+ARIFNTFGPRMHPNDGRVVSNFIIQ+LQ K+ITIYG G QTRSFQYVDDL++GL+KLMN  Y+ PVN+GNPDEYS+KDFA  +R++  N+ S+I  LP   DDP++R+PDI+ AK+ELGW P VSV +GL KTIEYF+ E+E  GEI PTGP+A +P+
Sbjct:  222 VSIRIARIFNTFGPRMHPNDGRVVSNFIIQSLQNKDITIYGDGAQTRSFQYVDDLINGLVKLMNGSYDSPVNIGNPDEYSIKDFATKIRDMT-NSKSEIKFLPKVADDPSQREPDISTAKRELGWSPKVSVEEGLKKTIEYFKGEVESAGEIVPTGPDAVKPK 383          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|1072221110|gb|OEU05926.1| (putative bifunctional dTDP-glucose 4,6-dehydratase/UDP-glucuronate decarboxylase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 237.654 bits (605), Expect = 1.613e-75
Identity = 111/163 (68.10%), Postives = 139/163 (85.28%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
            +EVRVARIFNTFGPRMHPNDGRVVSNFIIQALQ K +TIYG+G QTRSFQYV DLV GL  LMN DY+ PVNLGNPDE+++K+FA  V++L + ++S I+ L  T+DDP KRKPDI++AK++LGWEP V+V++GL+KTI YF++ L+E GEI PTGP A++PQ
Sbjct:  163 VEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQKKALTIYGEGDQTRSFQYVSDLVDGLHALMNGDYDGPVNLGNPDEFTMKEFAQYVKKLTK-SESDIIFLEKTQDDPNKRKPDISLAKEKLGWEPRVTVKEGLSKTITYFQQVLDEAGEIIPTGPGASKPQ 324          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|676390577|ref|XP_009038566.1| (hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens] >gi|323450941|gb|EGB06820.1| hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens])

HSP 1 Score: 230.335 bits (586), Expect = 3.567e-72
Identity = 112/168 (66.67%), Postives = 135/168 (80.36%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEET-GEITPTGPEAARPQPHVE 167
            +EVRVARIFNTFG RMHPNDGRVVSNFIIQALQ K+IT+YG G QTRSFQ+VDDLV GL  LMNS+Y LPVNLGNPDEY+V  FA  +++L   + S+IV LPAT DDP +RKPDIT AK  +GW+P  +V  GLA+TIEYF++EL +  G ITPTGP A++P+P  +
Sbjct:  187 VEVRVARIFNTFGRRMHPNDGRVVSNFIIQALQNKDITLYGDGSQTRSFQFVDDLVDGLHALMNSNYSLPVNLGNPDEYTVAGFAETIKKLT-GSRSKIVRLPATTDDPRQRKPDITTAKTHIGWQPKWTVGRGLAETIEYFKRELADMGGSITPTGPLASKPRPRAD 353          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|1072223642|gb|OEU08397.1| (putative dTDP-glucose 4,6-dehydratase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 229.565 bits (584), Expect = 3.426e-71
Identity = 107/165 (64.85%), Postives = 134/165 (81.21%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGE--ITPTGPEAARPQ 163
            +EVR+ARIFNTFGPRMHPNDGRVVSNFIIQALQ K+ITIYG G QTRSFQYV+DLV GL+KLMNSDY+ PVN+GNPDEYS+K+FA  ++E+  ++ S+I++LP   DDP +R PDIT AK +L W P   V+ GLAK +EYF+  L+  G+  I PTGPEA++P+
Sbjct:  251 VEVRIARIFNTFGPRMHPNDGRVVSNFIIQALQNKDITIYGDGNQTRSFQYVNDLVEGLVKLMNSDYDGPVNIGNPDEYSIKNFAEQIKEMT-SSQSKIIYLPKVADDPTQRNPDITTAKAKLNWSPQWHVKAGLAKAVEYFQAVLDMAGDDGIKPTGPEASKPK 414          
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|1210530067|dbj|GAX11325.1| (UDP-glucuronate decarboxylase [Fistulifera solaris])

HSP 1 Score: 229.565 bits (584), Expect = 2.039e-70
Identity = 107/163 (65.64%), Postives = 131/163 (80.37%), Query Frame = 0
Query:    1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
            +++RVARIFNTFGPRMHPNDGRVVSNFII+ALQ K++TIYG G+QTRSFQYV DLV GL  LMN+DY  PVNLGNP E+++ +FA  V+ L +++ SQI+ LP + DDP +R+PDI  AK+EL WEP VSV +GL KTIEYF   L E GEI PTGP AA+P+
Sbjct:  319 LDIRVARIFNTFGPRMHPNDGRVVSNFIIEALQNKDMTIYGDGKQTRSFQYVSDLVDGLHALMNNDYTQPVNLGNPSEWTIAEFAEHVQALTKSS-SQIIKLPKSTDDPQQRRPDIQTAKRELDWEPKVSVDEGLKKTIEYFAAVLREAGEIIPTGPGAAKPE 480          
The following BLAST results are available for this feature:
BLAST of EWM28682.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111105|gb|EWM28682.1|2.057e-124100.00dtdp-glucose -dehydratase [Nannochloropsis gaditan... [more]
gi|585110039|gb|EWM27762.1|4.286e-9278.05udp-glucuronic acid decarboxylase 1 [Nannochlorops... [more]
gi|553190626|ref|XP_005855230.1|3.627e-8878.05UDP-glucuronate decarboxylase [Nannochloropsis gad... [more]
gi|298708329|emb|CBJ48392.1|4.928e-8173.62conserved unknown protein [Ectocarpus siliculosus][more]
gi|219130674|ref|XP_002185484.1|2.364e-7771.17nad-dependent epimerase/dehydratase [Phaeodactylum... [more]
gi|224005937|ref|XP_002291929.1|2.036e-7666.87dtdp-glucose 4,6-dehydratase [Thalassiosira pseudo... [more]
gi|1072221110|gb|OEU05926.1|1.613e-7568.10putative bifunctional dTDP-glucose 4,6-dehydratase... [more]
gi|676390577|ref|XP_009038566.1|3.567e-7266.67hypothetical protein AURANDRAFT_28689 [Aureococcus... [more]
gi|1072223642|gb|OEU08397.1|3.426e-7164.85putative dTDP-glucose 4,6-dehydratase [Fragilariop... [more]
gi|1210530067|dbj|GAX11325.1|2.039e-7065.64UDP-glucuronate decarboxylase [Fistulifera solaris... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1849rna1849Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications