EWM28682.1, cds1844 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|585111105|gb|EWM28682.1| (dtdp-glucose -dehydratase [Nannochloropsis gaditana]) HSP 1 Score: 355.91 bits (912), Expect = 2.057e-124 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQPHVEESNRS 172
MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQPHVEESNRS
Sbjct: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQPHVEESNRS 172
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|585110039|gb|EWM27762.1| (udp-glucuronic acid decarboxylase 1 [Nannochloropsis gaditana]) HSP 1 Score: 275.404 bits (703), Expect = 4.286e-92 Identity = 128/164 (78.05%), Postives = 147/164 (89.63%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQP 164
++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGK+ITIYG+G QTRSFQYV+DLV+GL KLMNSDY LPVNLGNP+EY+VKDFALLV+ELV + S IVH+PATKDDPAKRKPDI +A LGW+P V VR+GL+KT+ YFR ELE+TGEI PTGP+A RP+P
Sbjct: 11 VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 174
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|553190626|ref|XP_005855230.1| (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526] >gi|422293832|gb|EKU21132.1| UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 276.559 bits (706), Expect = 3.627e-88 Identity = 128/164 (78.05%), Postives = 147/164 (89.63%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQP 164
++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGK+ITIYG+G QTRSFQYV+DLV+GL KLMNSDY LPVNLGNP+EY+VKDFALLV+ELV + S IVH+PATKDDPAKRKPDI +A LGW+P V VR+GL+KT+ YFR ELE+TGEI PTGP+A RP+P
Sbjct: 325 VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKP 488
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|298708329|emb|CBJ48392.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 256.914 bits (655), Expect = 4.928e-81 Identity = 120/163 (73.62%), Postives = 144/163 (88.34%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
MEVRVARIFNTFGPRMHPNDGRVVSNFIIQA+QGK+ITIYG G QTRSFQYVDDLV GL+ LMN++Y PVN+GNPDEY+VKDFA L++ +T S+I+ + TKDDP KRKPDIT+AKKELGWEPTV+V+DGL +TI+YFR EL++TGEI PTGP+A++P+
Sbjct: 312 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQAIQGKDITIYGDGSQTRSFQYVDDLVRGLIALMNNNYSGPVNIGNPDEYTVKDFAELIKSSTEST-SKIIFMDGTKDDPNKRKPDITLAKKELGWEPTVAVKDGLVETIKYFRGELKKTGEIIPTGPDASKPR 473
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|219130674|ref|XP_002185484.1| (nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403015|gb|EEC42971.1| nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 248.44 bits (633), Expect = 2.364e-77 Identity = 116/163 (71.17%), Postives = 139/163 (85.28%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
++VRVARIFNTFGPRMHPNDGRVVSNFIIQALQ KN+TIYG+G+QTRSFQYV DLV GL LMN +Y+LPVNLGNP+EYSVKDFA ++EL ++T S I+ LP ++DDP++R+PDIT AK+ELGWEP V V+ GL KTIEYF + LE GEI PTGP AA+P+
Sbjct: 352 VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQNKNMTIYGEGKQTRSFQYVTDLVDGLYALMNGNYDLPVNLGNPEEYSVKDFATYIQELTKST-SDIIFLPKSEDDPSQRRPDITTAKRELGWEPQVKVQKGLEKTIEYFARVLESAGEIIPTGPGAAKPE 513
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|224005937|ref|XP_002291929.1| (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >gi|220972448|gb|EED90780.1| dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 242.276 bits (617), Expect = 2.036e-76 Identity = 109/163 (66.87%), Postives = 136/163 (83.44%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
+ +R+ARIFNTFGPRMHPNDGRVVSNFIIQ+LQ K+ITIYG G QTRSFQYVDDL++GL+KLMN Y+ PVN+GNPDEYS+KDFA +R++ N+ S+I LP DDP++R+PDI+ AK+ELGW P VSV +GL KTIEYF+ E+E GEI PTGP+A +P+
Sbjct: 222 VSIRIARIFNTFGPRMHPNDGRVVSNFIIQSLQNKDITIYGDGAQTRSFQYVDDLINGLVKLMNGSYDSPVNIGNPDEYSIKDFATKIRDMT-NSKSEIKFLPKVADDPSQREPDISTAKRELGWSPKVSVEEGLKKTIEYFKGEVESAGEIVPTGPDAVKPK 383
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|1072221110|gb|OEU05926.1| (putative bifunctional dTDP-glucose 4,6-dehydratase/UDP-glucuronate decarboxylase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 237.654 bits (605), Expect = 1.613e-75 Identity = 111/163 (68.10%), Postives = 139/163 (85.28%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
+EVRVARIFNTFGPRMHPNDGRVVSNFIIQALQ K +TIYG+G QTRSFQYV DLV GL LMN DY+ PVNLGNPDE+++K+FA V++L + ++S I+ L T+DDP KRKPDI++AK++LGWEP V+V++GL+KTI YF++ L+E GEI PTGP A++PQ
Sbjct: 163 VEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQKKALTIYGEGDQTRSFQYVSDLVDGLHALMNGDYDGPVNLGNPDEFTMKEFAQYVKKLTK-SESDIIFLEKTQDDPNKRKPDISLAKEKLGWEPRVTVKEGLSKTITYFQQVLDEAGEIIPTGPGASKPQ 324
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|676390577|ref|XP_009038566.1| (hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens] >gi|323450941|gb|EGB06820.1| hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens]) HSP 1 Score: 230.335 bits (586), Expect = 3.567e-72 Identity = 112/168 (66.67%), Postives = 135/168 (80.36%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEET-GEITPTGPEAARPQPHVE 167
+EVRVARIFNTFG RMHPNDGRVVSNFIIQALQ K+IT+YG G QTRSFQ+VDDLV GL LMNS+Y LPVNLGNPDEY+V FA +++L + S+IV LPAT DDP +RKPDIT AK +GW+P +V GLA+TIEYF++EL + G ITPTGP A++P+P +
Sbjct: 187 VEVRVARIFNTFGRRMHPNDGRVVSNFIIQALQNKDITLYGDGSQTRSFQFVDDLVDGLHALMNSNYSLPVNLGNPDEYTVAGFAETIKKLT-GSRSKIVRLPATTDDPRQRKPDITTAKTHIGWQPKWTVGRGLAETIEYFKRELADMGGSITPTGPLASKPRPRAD 353
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|1072223642|gb|OEU08397.1| (putative dTDP-glucose 4,6-dehydratase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 229.565 bits (584), Expect = 3.426e-71 Identity = 107/165 (64.85%), Postives = 134/165 (81.21%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGE--ITPTGPEAARPQ 163
+EVR+ARIFNTFGPRMHPNDGRVVSNFIIQALQ K+ITIYG G QTRSFQYV+DLV GL+KLMNSDY+ PVN+GNPDEYS+K+FA ++E+ ++ S+I++LP DDP +R PDIT AK +L W P V+ GLAK +EYF+ L+ G+ I PTGPEA++P+
Sbjct: 251 VEVRIARIFNTFGPRMHPNDGRVVSNFIIQALQNKDITIYGDGNQTRSFQYVNDLVEGLVKLMNSDYDGPVNIGNPDEYSIKNFAEQIKEMT-SSQSKIIYLPKVADDPTQRNPDITTAKAKLNWSPQWHVKAGLAKAVEYFQAVLDMAGDDGIKPTGPEASKPK 414
BLAST of EWM28682.1 vs. NCBI_GenBank
Match: gi|1210530067|dbj|GAX11325.1| (UDP-glucuronate decarboxylase [Fistulifera solaris]) HSP 1 Score: 229.565 bits (584), Expect = 2.039e-70 Identity = 107/163 (65.64%), Postives = 131/163 (80.37%), Query Frame = 0
Query: 1 MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQYVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIVHLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETGEITPTGPEAARPQ 163
+++RVARIFNTFGPRMHPNDGRVVSNFII+ALQ K++TIYG G+QTRSFQYV DLV GL LMN+DY PVNLGNP E+++ +FA V+ L +++ SQI+ LP + DDP +R+PDI AK+EL WEP VSV +GL KTIEYF L E GEI PTGP AA+P+
Sbjct: 319 LDIRVARIFNTFGPRMHPNDGRVVSNFIIEALQNKDMTIYGDGKQTRSFQYVSDLVDGLHALMNNDYTQPVNLGNPSEWTIAEFAEHVQALTKSS-SQIIKLPKSTDDPQQRRPDIQTAKRELDWEPKVSVDEGLKKTIEYFAAVLREAGEIIPTGPGAAKPE 480 The following BLAST results are available for this feature:
BLAST of EWM28682.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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