rna1849, rna1849 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1849
Unique Name	rna1849
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1086
Alignment location	CM002458.1:291060..292682 +

Link to JBrowse

Properties


Property Name	Value
Product	dtdp-glucose -dehydratase
Orig transcript id	gnl\|cribi\|Naga_100002g174.4801.mrna
Orig protein id	gnl\|cribi\|Naga_100002g174.4801
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:291060..292682 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g174	gene1772	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1849	rna1849-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28682.1	cds1844	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:291060..292682+
coding sequence from alignment at CM002458.1:291060..292682+

mRNA sequence

>rna1849 ID=rna1849|Name=rna1849|organism=Nannochloropsis gaditana|type=mRNA|length=1086bp
AATACATGACCTGCACCATCCCACTGACAGATACGACTCCGTGTGCATTC
CCACGTCAACCAATATGCTGTCCGTCTTTTCTCGCGTGCGTCGCCCCACC
AACCTCCCCTCCTTTCTGGCCCTGACAACACGTGGCATCAACACCGGTTC
CAAAGTTCCCACTCTTCCGCTCAAGGAGGTGACAGGCGATACTGTTTCTG
ATGTGTCGAGCAACGACTTTTTCAGAGGGAAGGTGGTATTAATTGGCCTT
CCAGCGGCGTTTTCCCCCACGTGCTCCGAAAAACATGTTCCAGGATATCT
TGCGCATGCGCGGAACTTCAAACAAAAGGGCGTCGATAAAATTGCGGTCC
TGGCAGTGAATGATTTCTTTACTATGAAGGCTTGGGCCAAAGCCCAAGGT
ATAGGCGATGAAATTAGTTTTGTAGCAGATGGAAACGGGGAGCTAACCAA
TGCCCTTGGCTTAGAATTAGATTTGACGAAAGCTGTCCTAGGGAAGCGAT
GTAAGCGTTTCTCGATGGTCTTAGAGGATGGAATTGTAAAATCTTTATCA
ATAGAGCCGGACGGGACAGGATATACCGTTAGCTCTGCAGAAAGTACGCT
GAAGCAGGTTTGATGAAGTTTGTCTGCTTCTTTGCAACGAATGACATGAA
TGGGACTGAATAGGCCCAAATACTCCCCCATTCTACGTGATACGAGTTGT
CCAGTATATGTGATCAATTTTGAATCGTATGATATGACCCTATGTAGGTG
TAGCCTGTGCGACTAGTTGACTTCTACGGAAGAACGGATGAGAAATGAGT
TCTAAATTTTCCTAAGACTTTCTGAGGTCCACAGCTTTGATTTTTGCTAT
GGCAACAGCAACAAGCATTGGGGGGTCAACCTTGCTTGGAAAATGAGAGC
ATATTCGTCTAGTGACAGATGTTCTTTCTCATCTTTTCAAAAACTTTGGC
CGCTTTCGACCTACTATATACATAAACAAATTAAGAAATCATTCTTGGAA
AGATATCAATACGTGATTATTCACTGTGATTGTACTGTATATCTTTTGGT
AAATATGCTGCTACATGTGTGCATGTCATTCATGAA

protein sequence of rna1849

>rna1849-protein ID=rna1849-protein|Name=rna1849|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MEVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKNITIYGKGRQTRSFQ
YVDDLVSGLMKLMNSDYELPVNLGNPDEYSVKDFALLVRELVRNTDSQIV
HLPATKDDPAKRKPDITIAKKELGWEPTVSVRDGLAKTIEYFRKELEETG
EITPTGPEAARPQPHVEESNRS

mRNA from alignment at CM002458.1:291060..292682+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1849 ID=rna1849|Name=rna1849|organism=Nannochloropsis gaditana|type=mRNA|length=1623bp|location=Sequence derived from alignment at CM002458.1:291060..292682+ (Nannochloropsis gaditana)
CGCGTACAGGTcgcagggcggggagggggactcGAGCATGGAGGTGCGGG
TGGCCAGGATTTTCAACACGTTTGGACCGCGGATGCATCCCAACGACGGA
CGGGTGGTCAGGTACGGAGGGAGACCGGGAcgaagatgggagggaaggag
gtggagagggccatcaggggagggagggcgccaGACCGTTTCGTCAATTC
TTCTCGAGATGGAGTGGTCGTGTCTCACGTCTTGTCGGTCGTGCCCATGA
TTGttttccacccctttcctctGGCTCGGACGCGATGCCTCTGCAGCAAT
TTTATTATCCAGGCGCTTCAAGGGAAGAACATCACCATCTACggcaaagg
aaggcagaCACGGTCTTTCCAGTATGTGGACGACCTGGTCTCGGGCCTCA
TGAAGCTCATGAACAGGTAAGGACGtagacagaggaggggagcggagaag
ggggcatggaggagaggacaagggcggtCCCACAGGcggcaaggagagag
agagtgCGCCGTCGGATTACGACGCTGTCAACCCCACTGGTATTGACCTC
CACCTCTTTGCCTATCTCCCGTGTTTCTCGTACGTCGTATTTCTCCCTGG
CAGCGACTACGAACTGCCCGTCAACCTCGGGAACCCCGACGAATACTCCG
TCAAGGACTTCGCCTTGCTTGTGCGGGtgagtgaggaggggagacgagga
gggaaaagggagggagggagggaaggtgggtgTCAAGATGGGTGCTCACC
AGGGAGAATCTACAGACCTCAAGAGTCTAAAAGAATCGTGCCCATTCCGA
AAGCCAAAACCACGTTCTCAACGttcctcttcggcctccaTCAGCATCTC
ATCTTTCCCCATTCTGTCTCTTCAAACCACAGGAGCTGGTCAGGAACACG
GACAGCCAAATAGTGCACTTACCGGCGACCAAAGATGACCCCGCGAAGCG
CAAACCTGACATCACTATCGCCAAGAAAGAATTAGGTTGGGAACCAACGG
TGTCGGTGCGGGACGGCTTGGCCAAGACCATCGAGTATTTCCGAAAAGAA
CTGGAAGAAACGGTACGTCGACCACCATGCCTGCTCGCTCGAATCACTTT
GTGTCCGGGTAGTGTATTTTAGACGGCTTAGCAGCTTGACAGAGACGGCC
TTGAATGCTCGCAGGCTTATCGAATCCGAAAAGCTTCCAAACCTATGTCG
AGGCACGACGCTTCAGTAacgccctttccttttccttttcgccATTTCGT
GGAAATTTGACAGGGCGAGATCACGCCGACGGGACCCGAGGCCGCAAGAC
CACAGCCGCATGTAGAGGAGAGCAACAGGAGTTGAGGCAGGCAAAGGGCC
CGATCGGGTGACGAATagcaggaaagggggaacTGTGTGGGAAATAAGGA
CGCGCGGGACGTTGCGTAGGTTGTGTATTTGAGCAATAGAGGCCAGCGAT
AGTTTCATGTCATAAGCTGAAGGTCGGGCGATATCTGGCTTGTGGTGCTC
TTTACGAAGAATCTACTCCAGTGACAGGAGGTAAAGAACAAAATCCAGGA
ATGTCGCATGCCGCGCAGACCTGGGACTTTTCGGAGCGTTTTCTCCCATG
AAGCACGAGTCACAAATCATACC

Coding sequence (CDS) from alignment at CM002458.1:291060..292682+

>rna1849 ID=rna1849|Name=rna1849|organism=Nannochloropsis gaditana|type=CDS|length=2595bp|location=Sequence derived from alignment at CM002458.1:291060..292682+ (Nannochloropsis gaditana)
ATGGAGGTGCGGGTGGCCAGGATTTTCAACACGTTTGGACCGCGGATGCA
TCCCAACGACGGACGGGTGGTCAGCAATTTTATTATCCAGGCGCTTCAAG
GGAAGAACATCACCATCTACggcaaaggaaggcagaCACGGTCTTTCCAG
TATGTGGACGACCTGGTCTCGGGCCTCATGAAGCTCATGAACAGCGACTA
CGAACTGCCCGTCAACCTCGGGAACCCCGACGAATACTCCGTCAAGGACT
TCGCCTTGCTTGTGCGGGAGCTGGTCAGGAACACGGACAGCCAAATAGTG
CACTTACCGGCGACCAAAGATGACCCCGCGAAGCGCAAACCTGACATCAC
TATCGCCAAGAAAGAATTAGGTTGGGAACCAACGGTGTCGGTGCGGGACG
GCTTGGCCAAGACCATCGAGTATTTCCGAAAAGAACTGGAAGAAACGGGC
GAGATCACGCCGACGGGACCCGAGGCCGCAAGACCACAGCCGCATGTAGA
GGAGAGCAACAGGAGTTGAATGGAGGTGCGGGTGGCCAGGATTTTCAACA
CGTTTGGACCGCGGATGCATCCCAACGACGGACGGGTGGTCAGCAATTTT
ATTATCCAGGCGCTTCAAGGGAAGAACATCACCATCTACggcaaaggaag
gcagaCACGGTCTTTCCAGTATGTGGACGACCTGGTCTCGGGCCTCATGA
AGCTCATGAACAGCGACTACGAACTGCCCGTCAACCTCGGGAACCCCGAC
GAATACTCCGTCAAGGACTTCGCCTTGCTTGTGCGGGAGCTGGTCAGGAA
CACGGACAGCCAAATAGTGCACTTACCGGCGACCAAAGATGACCCCGCGA
AGCGCAAACCTGACATCACTATCGCCAAGAAAGAATTAGGTTGGGAACCA
ACGGTGTCGGTGCGGGACGGCTTGGCCAAGACCATCGAGTATTTCCGAAA
AGAACTGGAAGAAACGGGCGAGATCACGCCGACGGGACCCGAGGCCGCAA
GACCACAGCCGCATGTAGAGGAGAGCAACAGGAGTTGAATGGAGGTGCGG
GTGGCCAGGATTTTCAACACGTTTGGACCGCGGATGCATCCCAACGACGG
ACGGGTGGTCAGCAATTTTATTATCCAGGCGCTTCAAGGGAAGAACATCA
CCATCTACggcaaaggaaggcagaCACGGTCTTTCCAGTATGTGGACGAC
CTGGTCTCGGGCCTCATGAAGCTCATGAACAGCGACTACGAACTGCCCGT
CAACCTCGGGAACCCCGACGAATACTCCGTCAAGGACTTCGCCTTGCTTG
TGCGGGAGCTGGTCAGGAACACGGACAGCCAAATAGTGCACTTACCGGCG
ACCAAAGATGACCCCGCGAAGCGCAAACCTGACATCACTATCGCCAAGAA
AGAATTAGGTTGGGAACCAACGGTGTCGGTGCGGGACGGCTTGGCCAAGA
CCATCGAGTATTTCCGAAAAGAACTGGAAGAAACGGGCGAGATCACGCCG
ACGGGACCCGAGGCCGCAAGACCACAGCCGCATGTAGAGGAGAGCAACAG
GAGTTGAATGGAGGTGCGGGTGGCCAGGATTTTCAACACGTTTGGACCGC
GGATGCATCCCAACGACGGACGGGTGGTCAGCAATTTTATTATCCAGGCG
CTTCAAGGGAAGAACATCACCATCTACggcaaaggaaggcagaCACGGTC
TTTCCAGTATGTGGACGACCTGGTCTCGGGCCTCATGAAGCTCATGAACA
GCGACTACGAACTGCCCGTCAACCTCGGGAACCCCGACGAATACTCCGTC
AAGGACTTCGCCTTGCTTGTGCGGGAGCTGGTCAGGAACACGGACAGCCA
AATAGTGCACTTACCGGCGACCAAAGATGACCCCGCGAAGCGCAAACCTG
ACATCACTATCGCCAAGAAAGAATTAGGTTGGGAACCAACGGTGTCGGTG
CGGGACGGCTTGGCCAAGACCATCGAGTATTTCCGAAAAGAACTGGAAGA
AACGGGCGAGATCACGCCGACGGGACCCGAGGCCGCAAGACCACAGCCGC
ATGTAGAGGAGAGCAACAGGAGTTGAATGGAGGTGCGGGTGGCCAGGATT
TTCAACACGTTTGGACCGCGGATGCATCCCAACGACGGACGGGTGGTCAG
CAATTTTATTATCCAGGCGCTTCAAGGGAAGAACATCACCATCTACggca
aaggaaggcagaCACGGTCTTTCCAGTATGTGGACGACCTGGTCTCGGGC
CTCATGAAGCTCATGAACAGCGACTACGAACTGCCCGTCAACCTCGGGAA
CCCCGACGAATACTCCGTCAAGGACTTCGCCTTGCTTGTGCGGGAGCTGG
TCAGGAACACGGACAGCCAAATAGTGCACTTACCGGCGACCAAAGATGAC
CCCGCGAAGCGCAAACCTGACATCACTATCGCCAAGAAAGAATTAGGTTG
GGAACCAACGGTGTCGGTGCGGGACGGCTTGGCCAAGACCATCGAGTATT
TCCGAAAAGAACTGGAAGAAACGGGCGAGATCACGCCGACGGGACCCGAG
GCCGCAAGACCACAGCCGCATGTAGAGGAGAGCAACAGGAGTTGA

Synonyms

Publications