rna1843, rna1843 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1843
Unique Name	rna1843
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:273299..274966 +

Link to JBrowse

Properties


Property Name	Value
Product	Trimeric LpxA
Orig transcript id	gnl\|cribi\|Naga_100199g6.9708.mrna
Orig protein id	gnl\|cribi\|Naga_100199g6.9708
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:273299..274966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100199g6	gene1767	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1843	rna1843-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28838.1	cds1838	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at CM002458.1:273299..274966+
coding sequence from alignment at CM002458.1:273299..274966+

protein sequence of rna1843

>rna1843-protein ID=rna1843-protein|Name=rna1843|organism=Nannochloropsis gaditana|type=polypeptide|length=278bp
MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAP
AIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDR
AVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAV
VKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVA
SFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIP
GFGVPGRIFNHPLTVPLPEGSDRSGASK

mRNA from alignment at CM002458.1:273299..274966+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1843 ID=rna1843|Name=rna1843|organism=Nannochloropsis gaditana|type=mRNA|length=1668bp|location=Sequence derived from alignment at CM002458.1:273299..274966+ (Nannochloropsis gaditana)
tgcggcccctcctccaactgtGGCTTAGACCCCAGACATGTGCTGTCATC
GCATCGTGTTGGTTGACATAGGAACCGTCCGTGGGTGTGACTTTTTAGGG
CTGTTGTGTTTTTTTGGGGCGGGTGTTTATTTGACGAAgggcggaagcgg
cggaggggccGGTGGCTCATGCAGTGGCCTTGCGCTCCCCTACTCTCTTA
AGCGTGACCGCAGAAAGACCGCGCGTCTTCGCGTCGTCGGGACTGGTCCG
TCTCCAACTGTGCGTGTTATATTCTCGCGGTCCTGCCGTGGTTGACTTCG
TTGTAGGGAGAGATTTCCACTTGCATGTGTTTTGTCGGCCTCGCATCTAG
CTAGGGCGATTCTCATGCGTTCTCATCCCTTCCCAAAATGCTCATTGACC
AGACTCCTCTTGGATTTCCTCCCTAATTTTCATTTTTTGTCCAATTCACT
TGAAAATAGGCTTGGGATCGCGCTAGTTGCTCTGGAAGACGGGCACACCA
GGGGGACGGCGGAAGGAAGTTAGCTCTCAAGCCGACCCCAGTATGACGGG
ACCTATTCTCAGTGCTTTTGGAGCCGCCGCCCGGGCTGCGGGAAGGGCCT
TTGAAAACGCGGGCAAGCTTTTGGAAGTGGCTCCCTACGTAGAACATCTG
GCACCCTCCACCAAGGTATTGTCCTTCGGAGGTAAGGCACCCGCCATCCA
TGAAACAGCCTTCGTCGCCCCCAGCGCCAGCATCATCGGGAACGTGCAAG
TGGGTAAAGGCGCTTCAGTCTGGTACGGGGCTACGCTGCGCGGAGACGTC
CAGAGCATCACGGTAGGAGAGCAAACGACGATTGGAGACAGGGCAGTGGT
GCACGTAGCCAAGCTGAAAGGAGACGCTCCTACTAAAATTGGGAATCGGG
TGACAGTTGGGCCCCGCGCGGTCATCCACGCTTGCACCCTGGAGGACGAA
TCGACGGTAGGAGCTGGGGCGCAAGTCCTTGACAAGGCAGTGGTCAAGAG
CCATGCCGCGTTGGCGCCTGGGGCAGTCTTAACTCCTGGAAAAACAGTCC
CCTCCGGACACCTGTGGGCGGGTGTGCCTGCCAAATTCGTGCGGGAGCTC
ACGGCGGAAGAAATAGCAAACATCAAGCGGGAAGCCGTGGCATCCTTCGA
GCTGGCCACCGTACACAAGGCGGAGACCAGCAAAGACTACgtgcaggtgg
aggcggacgaggaggcgtggATAGACAAGAAACAACGGTCACCGAACTAC
TGGCCACGGCTCAAGGACCCAAAGGACCCCGCAGAGATACCCGGATTTGG
CGTGCCTGGTCGCATCTTCAATCACCCTTTGACTGTACCGTTGCCGGAGG
GCTCGGATCGTTCGGGCGCGTCGAAGTgaggtgcgggaggagcgcaTAGG
atgggaagagggtggagaagGATGCGTGGTGGGACGGACCTGTCTAGGAA
ACGGGCCTGCACCCAGAGCGTGCACTTTGGACAGTGGGTTATAGAACGGA
GACACAGGCCCCCATGTGTGGGGTATTTGATGGCGTGCGTACGTGCGATT
GACGGGAAAGACCTGCCTGGAAGTGATCCTTGTGGTGCTCCGGGTCCTGG
GGGTGAATGACAAGCTGGATTCGCCACGTCGTGAATGCAAGAGTGACTCT
TCATACCTCTCCTTTCTA

Coding sequence (CDS) from alignment at CM002458.1:273299..274966+

>rna1843 ID=rna1843|Name=rna1843|organism=Nannochloropsis gaditana|type=CDS|length=837bp|location=Sequence derived from alignment at CM002458.1:273299..274966+ (Nannochloropsis gaditana)
ATGACGGGACCTATTCTCAGTGCTTTTGGAGCCGCCGCCCGGGCTGCGGG
AAGGGCCTTTGAAAACGCGGGCAAGCTTTTGGAAGTGGCTCCCTACGTAG
AACATCTGGCACCCTCCACCAAGGTATTGTCCTTCGGAGGTAAGGCACCC
GCCATCCATGAAACAGCCTTCGTCGCCCCCAGCGCCAGCATCATCGGGAA
CGTGCAAGTGGGTAAAGGCGCTTCAGTCTGGTACGGGGCTACGCTGCGCG
GAGACGTCCAGAGCATCACGGTAGGAGAGCAAACGACGATTGGAGACAGG
GCAGTGGTGCACGTAGCCAAGCTGAAAGGAGACGCTCCTACTAAAATTGG
GAATCGGGTGACAGTTGGGCCCCGCGCGGTCATCCACGCTTGCACCCTGG
AGGACGAATCGACGGTAGGAGCTGGGGCGCAAGTCCTTGACAAGGCAGTG
GTCAAGAGCCATGCCGCGTTGGCGCCTGGGGCAGTCTTAACTCCTGGAAA
AACAGTCCCCTCCGGACACCTGTGGGCGGGTGTGCCTGCCAAATTCGTGC
GGGAGCTCACGGCGGAAGAAATAGCAAACATCAAGCGGGAAGCCGTGGCA
TCCTTCGAGCTGGCCACCGTACACAAGGCGGAGACCAGCAAAGACTACgt
gcaggtggaggcggacgaggaggcgtggATAGACAAGAAACAACGGTCAC
CGAACTACTGGCCACGGCTCAAGGACCCAAAGGACCCCGCAGAGATACCC
GGATTTGGCGTGCCTGGTCGCATCTTCAATCACCCTTTGACTGTACCGTT
GCCGGAGGGCTCGGATCGTTCGGGCGCGTCGAAGTga

Synonyms

Publications