EWM28838.1, cds1838 (CDS) Nannochloropsis gaditana

Overview
NameEWM28838.1
Unique Namecds1838
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:273841..274677 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28838.1
ProductTrimeric LpxA
Orig transcript idgnl|cribi|Naga_100199g6.9708.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:273841..274677 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011004Trimer_LpxA-like
IPR001451Hexapep_transf
Homology
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|585111262|gb|EWM28838.1| (Trimeric LpxA [Nannochloropsis gaditana])

HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
Query:    1 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEGSDRSGASK 278
            MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEGSDRSGASK
Sbjct:    1 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEGSDRSGASK 278          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|1072228198|gb|OEU12936.1| (gamma carbonic anhydrase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 264.618 bits (675), Expect = 6.728e-85
Identity = 132/268 (49.25%), Postives = 185/268 (69.03%), Query Frame = 0
Query:    1 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIH-ETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYW-PRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266
            M+  I  A   AAR  G A ++ G  +EVA Y E L PS++++S  G +PA+     F+APSAS+IGNV +G+ +SVWYGAT+RGDV ++ +G +T++GDRAVVHVAK++GD PT IG+ VT+G  A++HACT+ED   +G  AQ++D A V +++ +AP +++TPG  VPSG LW+G PAK VR LTA+EIA+I   A  + ELA +H  E SKDY Q+  ++E  +D+K R   ++ P + DP D   + G GVPGRIFN  LT P
Sbjct:    4 MSSRIAVAASGAARKIGAALDSMGAGMEVAKYTERLVPSSRIVSVNGVSPALSGANNFIAPSASVIGNVTIGEHSSVWYGATVRGDVNTLKIGSKTSVGDRAVVHVAKIQGDHPTYIGDNVTIGACAIVHACTIEDLVVIGESAQIMDGASVSTNSIIAPASIVTPGTKVPSGELWSGSPAKKVRSLTADEIASISESAHDTLELAYLHAVENSKDYKQLIEEDEDRLDRKLRKKAWFDPNIPDPDD---VLGQGVPGRIFNSTLTNP 268          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|397627610|gb|EJK68540.1| (hypothetical protein THAOC_10267 [Thalassiosira oceanica])

HSP 1 Score: 254.603 bits (649), Expect = 3.343e-81
Identity = 124/254 (48.82%), Postives = 175/254 (68.90%), Query Frame = 0
Query:   14 RAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHE-TAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266
            R  G++ +  G  +EV  Y + L PST+ ++  G  P +   TAFVAPSAS+IG+V +GK +SVWYGAT+RGDV  +++GE T +GDRAV+HVAK++GD P+ IG+ VT+GP A++HA TL++   VGA AQVLD +VV+ ++ +A GAV+TPG TV  G  W+G PAK VR+++AEE+A+     V + ELA +H  ETSKD+ Q++ DEEA+ D   R P YW    + K+  ++ G G PG IF+  LT P
Sbjct:    3 RKVGQSLDGLGSSMEVCKYKDRLVPSTRFVAVDGVTPTVDPLTAFVAPSASVIGDVTLGKNSSVWYGATVRGDVHKVSIGENTCVGDRAVIHVAKIQGDFPSVIGDNVTIGPGAIVHAATLKNSVVVGANAQVLDGSVVEQNSIIAAGAVVTPGTTVGEGQYWSGSPAKMVRKVSAEELASSAENTVETLELARMHHFETSKDHEQIQKDEEAYEDAMTRDPEYWQPDPNAKEEGDVLGQGSPGLIFDTVLTNP 256          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|224001782|ref|XP_002290563.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973985|gb|EED92315.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 248.054 bits (632), Expect = 2.524e-78
Identity = 125/263 (47.53%), Postives = 177/263 (67.30%), Query Frame = 0
Query:    5 ILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHE-TAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266
            ++ A    AR  G++ ++ G+ LEV  Y E L PST+ ++  G +P +   TAFVAPSAS+IG+V +GKGASVWYGAT+RGDV  + +G+ T++GDRAV+HVAK++GD P+ IG+ VT+GP A++HA TL+D   VG  AQVLD AVV+ ++ +A GAV+TPG  V +G LW+G PAK VR++TAEE+ N    ++   ELA +H  E  K   Q+  DEEA+ D   R P Y+    + ++  ++ G G PG IF+  LT P
Sbjct:    8 VVLAASNTARKLGQSLDSLGQSLEVVKYTERLVPSTRFVAVDGVSPTVSPLTAFVAPSASVIGDVTLGKGASVWYGATVRGDVHKVVIGDNTSVGDRAVIHVAKIQGDFPSLIGDNVTIGPGAIVHAATLKDNCVVGPMAQVLDGAVVEENSMVAAGAVVTPGTVVKTGELWSGSPAKMVRKVTAEELQNASENSMDVLELARMHAFECDKTLEQLTNDEEAYEDATTRDPEYYQPTGEVEE-GDVLGQGSPGLIFDSVLTNP 269          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|299470267|emb|CBN79571.1| (gamma carbonic anhydrase [Ectocarpus siliculosus])

HSP 1 Score: 244.588 bits (623), Expect = 8.959e-77
Identity = 122/264 (46.21%), Postives = 171/264 (64.77%), Query Frame = 0
Query:    7 SAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDP----AEIPGFGVPGRIFNHPLTVP 266
            +A G AAR  GR+ +  G  LE  PY E L  ST+ +   GK P+  + +FVAP+AS+IG+V+VG+GAS+WYG+ +RGDV  + +G  +++GD AVVHVA L G+ PT +GN V +GPRA IHACTL+D+  VGAGA V+D A V S A +APGA ++P  TVP+G LWAG PA +VR+++  E A+I   A  +  L+  H +E  K  +++E DE  W +K  R P Y  ++ +  D      ++ G GVPGR+FN  L  P
Sbjct:    7 TAVGMAARRVGRSLDGMGAALETHPYTEKLLASTRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGSVVRGDVNHVVIGAGSSVGDSAVVHVAGLAGNKPTIVGNNVVIGPRATIHACTLKDDCMVGAGATVMDGATVSSGAMVAPGATVSPNITVPTGQLWAGTPAVYVRDISELEAASIVTTAAETQALSLAHASECEKGPLEIELDERKWDEKASRDPTYVFQVPEEGDDNLAYNDVEGQGVPGRVFNTNLRSP 270          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|1210515167|dbj|GAX25879.1| (hypothetical protein FisN_6Hh083 [Fistulifera solaris])

HSP 1 Score: 238.81 bits (608), Expect = 8.278e-75
Identity = 124/262 (47.33%), Postives = 169/262 (64.50%), Query Frame = 0
Query:    9 FGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEG 270
              +A R  G A + AGK +E+  Y E L PST+ ++  G  P +    FVAPSAS+IGNV +GKG+S+WYGAT+RGDV  +T+G++T+IGDR+VVHVAK++GD PT IG+ VT+GP A++HA TL+D   +G  AQV+D AVV+  A +AP +V+TPG  +P+G LWAG PAK VR LT  E+++     + +  LA  H  E +KDY Q+  +E    D  +      PR K  KD  ++ G G PGRIF   LT P   G
Sbjct:   12 LASAMRKVGSALDGAGKGIEITKYTEKLVPSTRFVAVDGIGPTVSAECFVAPSASVIGNVSIGKGSSIWYGATIRGDVNEVTIGDRTSIGDRSVVHVAKIQGDFPTHIGSGVTIGPGALVHAATLKDGCVIGEAAQVMDGAVVEEKAYVAPASVVTPGTKIPAGELWAGAPAKKVRALTEAELSSAAEAVLQTAILAQEHAIENAKDYKQI-LEEAELADIAEHLDESSPR-KPIKDINDVLGQGPPGRIFRSTLTHPYEAG 271          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|1210519799|dbj|GAX21351.1| (hypothetical protein FisN_6Lh083 [Fistulifera solaris])

HSP 1 Score: 234.958 bits (598), Expect = 1.300e-73
Identity = 122/253 (48.22%), Postives = 165/253 (65.22%), Query Frame = 0
Query:   14 RAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266
            R  G A + AGK +E+  Y E L PST+ ++  G  P +    FVAPSAS+IGNV +GKG+S+WYGAT+RGDV  +T+G++T+IGDR+VVHVAK++GD PT IGN VT+G  A++HA TL+D   +G  AQV+D AVV+  A +AP +V+TPG  + +G LWAGVPAK VR LT  E+++     + +  LA  H  E +KDY Q+  +E    D  +      PR K  KD  ++ G G PGRIF   LT P
Sbjct:    2 RKVGSALDGAGKGIEITKYTEKLVPSTRFVAVDGIGPTVSAECFVAPSASVIGNVSIGKGSSIWYGATIRGDVNEVTIGDRTSIGDRSVVHVAKIQGDFPTHIGNGVTIGSGALVHAATLKDGCVIGEAAQVMDGAVVEEKAFVAPASVVTPGTKISAGELWAGVPAKKVRALTEAELSSAAEAVLQTAMLAQEHAIENAKDYKQI-MEEAELADIAEHLDESSPR-KPIKDINDVLGQGPPGRIFRSTLTHP 252          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|695378176|ref|XP_009516211.1| (hypothetical protein PHYSODRAFT_537494 [Phytophthora sojae] >gi|348689122|gb|EGZ28936.1| hypothetical protein PHYSODRAFT_537494 [Phytophthora sojae])

HSP 1 Score: 229.18 bits (583), Expect = 2.079e-71
Identity = 111/218 (50.92%), Postives = 153/218 (70.18%), Query Frame = 0
Query:   10 GAAARAAGRAFENAGKLLE-VAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAW 226
            G A R+ G+  +  G  LE    Y EHL PST+ +   G+AP   E  FVAP+AS+IG+V+VGKG+S+WY AT+RGDV  IT+GE T I D+AVVHVAK+  D PTKIGN VTVGP A++HACT++D   +G GAQVLD AVV + + +  G+++T GK VPSG LW+GVPA+++R+LTAEE+  +++ +    +LA  H  E +K + + EAD E +
Sbjct:    7 GKAIRSLGQTIDRVGVSLEGKLTYTEHLNPSTRAVKNLGRAPKFEEGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENTNIQDQAVVHVAKIHQDIPTKIGNNVTVGPNAIVHACTIQDHCIIGTGAQVLDGAVVGAKSIVTAGSIVTMGKQVPSGQLWSGVPARYLRDLTAEEMQFMQQCSAEYTQLAEQHAEECAKSFEEYEADTERF 224          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|673017780|ref|XP_008862851.1| (hypothetical protein H310_01513 [Aphanomyces invadans] >gi|574482054|gb|ETW09046.1| hypothetical protein H310_01513 [Aphanomyces invadans])

HSP 1 Score: 226.483 bits (576), Expect = 1.956e-70
Identity = 108/220 (49.09%), Postives = 155/220 (70.45%), Query Frame = 0
Query:    6 LSAFGAAARAAGRAFENAGKLLEVA-PYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEE 224
            + A G   RA G+  +  G  +E A  Y E L PST++++ GG  PA+  T FVAP+AS+IG V +G+G+SVWYGAT+RGDV +IT+G+ T I D+AVVH AK+  D PT IGN VT+GP+A+IHA  + ++  +G GAQVLD AVV  ++ +  G+++T GK+VP+G LW+G+PA+ VR+LT EEI  IK+ ++   EL+  H  E SK + ++EAD+E
Sbjct:    1 MQAIGNTLRAFGQKLDKVGVSIEGALSYTERLVPSTRLVNHGGHKPALASTTFVAPNASVIGEVSIGQGSSVWYGATVRGDVNAITIGDNTNIQDQAVVHAAKIANDFPTIIGNNVTIGPKAIIHAAKISNQCIIGTGAQVLDGAVVGENSIITAGSIVTQGKSVPAGQLWSGIPARAVRDLTTEEIEFIKQCSLDYVELSEAHSVEASKSFEEIEADKE 220          
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|566026250|gb|ETI49161.1| (hypothetical protein F443_06919 [Phytophthora parasitica P1569] >gi|567963557|gb|ETK89052.1| hypothetical protein L915_06794 [Phytophthora parasitica] >gi|567992264|gb|ETL42459.1| hypothetical protein L916_06736 [Phytophthora parasitica] >gi|568021544|gb|ETL95631.1| hypothetical protein L917_06603 [Phytophthora parasitica] >gi|568051931|gb|ETM48826.1| hypothetical protein L914_06698 [Phytophthora parasitica] >gi|570329948|gb|ETO77896.1| hypothetical protein F444_06984 [Phytophthora parasitica P1976] >gi|570953674|gb|ETP18931.1| hypothetical protein F441_06922 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 225.713 bits (574), Expect = 4.091e-70
Identity = 109/218 (50.00%), Postives = 153/218 (70.18%), Query Frame = 0
Query:   10 GAAARAAGRAFENAGKLLE-VAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAW 226
            G A R+ G+  +  G  LE    Y EHL PST+ +   G++P   E+ FVAP+AS+IG+V+VGKG+S+WY AT+RGDV  IT+GE T I D+AVVHVAK+  D PTKIG+ VTVGP A++HACT++D   +G GAQVLD AVV + + +  G+++T GK VPSG LW+GVPA+++R+LTAEE   +++ +    +LA  H  E +K + + EAD E +
Sbjct:    7 GKAIRSLGQTIDRVGVSLEGKFTYTEHLNPSTRAVKNLGRSPKFEESVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENTNIQDQAVVHVAKIHKDIPTKIGSNVTVGPAAIVHACTIQDHCIIGTGAQVLDGAVVGAKSIITAGSIVTKGKQVPSGQLWSGVPARYLRDLTAEETQFMQQCSAEYTQLAEQHAEECAKTFEEYEADTERY 224          
The following BLAST results are available for this feature:
BLAST of EWM28838.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111262|gb|EWM28838.1|0.000e+0100.00Trimeric LpxA [Nannochloropsis gaditana][more]
gi|1072228198|gb|OEU12936.1|6.728e-8549.25gamma carbonic anhydrase [Fragilariopsis cylindrus... [more]
gi|397627610|gb|EJK68540.1|3.343e-8148.82hypothetical protein THAOC_10267 [Thalassiosira oc... [more]
gi|224001782|ref|XP_002290563.1|2.524e-7847.53predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|299470267|emb|CBN79571.1|8.959e-7746.21gamma carbonic anhydrase [Ectocarpus siliculosus][more]
gi|1210515167|dbj|GAX25879.1|8.278e-7547.33hypothetical protein FisN_6Hh083 [Fistulifera sola... [more]
gi|1210519799|dbj|GAX21351.1|1.300e-7348.22hypothetical protein FisN_6Lh083 [Fistulifera sola... [more]
gi|695378176|ref|XP_009516211.1|2.079e-7150.92hypothetical protein PHYSODRAFT_537494 [Phytophtho... [more]
gi|673017780|ref|XP_008862851.1|1.956e-7049.09hypothetical protein H310_01513 [Aphanomyces invad... [more]
gi|566026250|gb|ETI49161.1|4.091e-7050.00hypothetical protein F443_06919 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1843rna1843Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications