EWM28838.1, cds1838 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|585111262|gb|EWM28838.1| (Trimeric LpxA [Nannochloropsis gaditana]) HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0 Query: 1 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEGSDRSGASK 278 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEGSDRSGASK Sbjct: 1 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEGSDRSGASK 278
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|1072228198|gb|OEU12936.1| (gamma carbonic anhydrase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 264.618 bits (675), Expect = 6.728e-85 Identity = 132/268 (49.25%), Postives = 185/268 (69.03%), Query Frame = 0 Query: 1 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIH-ETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYW-PRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266 M+ I A AAR G A ++ G +EVA Y E L PS++++S G +PA+ F+APSAS+IGNV +G+ +SVWYGAT+RGDV ++ +G +T++GDRAVVHVAK++GD PT IG+ VT+G A++HACT+ED +G AQ++D A V +++ +AP +++TPG VPSG LW+G PAK VR LTA+EIA+I A + ELA +H E SKDY Q+ ++E +D+K R ++ P + DP D + G GVPGRIFN LT P Sbjct: 4 MSSRIAVAASGAARKIGAALDSMGAGMEVAKYTERLVPSSRIVSVNGVSPALSGANNFIAPSASVIGNVTIGEHSSVWYGATVRGDVNTLKIGSKTSVGDRAVVHVAKIQGDHPTYIGDNVTIGACAIVHACTIEDLVVIGESAQIMDGASVSTNSIIAPASIVTPGTKVPSGELWSGSPAKKVRSLTADEIASISESAHDTLELAYLHAVENSKDYKQLIEEDEDRLDRKLRKKAWFDPNIPDPDD---VLGQGVPGRIFNSTLTNP 268
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|397627610|gb|EJK68540.1| (hypothetical protein THAOC_10267 [Thalassiosira oceanica]) HSP 1 Score: 254.603 bits (649), Expect = 3.343e-81 Identity = 124/254 (48.82%), Postives = 175/254 (68.90%), Query Frame = 0 Query: 14 RAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHE-TAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266 R G++ + G +EV Y + L PST+ ++ G P + TAFVAPSAS+IG+V +GK +SVWYGAT+RGDV +++GE T +GDRAV+HVAK++GD P+ IG+ VT+GP A++HA TL++ VGA AQVLD +VV+ ++ +A GAV+TPG TV G W+G PAK VR+++AEE+A+ V + ELA +H ETSKD+ Q++ DEEA+ D R P YW + K+ ++ G G PG IF+ LT P Sbjct: 3 RKVGQSLDGLGSSMEVCKYKDRLVPSTRFVAVDGVTPTVDPLTAFVAPSASVIGDVTLGKNSSVWYGATVRGDVHKVSIGENTCVGDRAVIHVAKIQGDFPSVIGDNVTIGPGAIVHAATLKNSVVVGANAQVLDGSVVEQNSIIAAGAVVTPGTTVGEGQYWSGSPAKMVRKVSAEELASSAENTVETLELARMHHFETSKDHEQIQKDEEAYEDAMTRDPEYWQPDPNAKEEGDVLGQGSPGLIFDTVLTNP 256
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|224001782|ref|XP_002290563.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973985|gb|EED92315.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 248.054 bits (632), Expect = 2.524e-78 Identity = 125/263 (47.53%), Postives = 177/263 (67.30%), Query Frame = 0 Query: 5 ILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHE-TAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266 ++ A AR G++ ++ G+ LEV Y E L PST+ ++ G +P + TAFVAPSAS+IG+V +GKGASVWYGAT+RGDV + +G+ T++GDRAV+HVAK++GD P+ IG+ VT+GP A++HA TL+D VG AQVLD AVV+ ++ +A GAV+TPG V +G LW+G PAK VR++TAEE+ N ++ ELA +H E K Q+ DEEA+ D R P Y+ + ++ ++ G G PG IF+ LT P Sbjct: 8 VVLAASNTARKLGQSLDSLGQSLEVVKYTERLVPSTRFVAVDGVSPTVSPLTAFVAPSASVIGDVTLGKGASVWYGATVRGDVHKVVIGDNTSVGDRAVIHVAKIQGDFPSLIGDNVTIGPGAIVHAATLKDNCVVGPMAQVLDGAVVEENSMVAAGAVVTPGTVVKTGELWSGSPAKMVRKVTAEELQNASENSMDVLELARMHAFECDKTLEQLTNDEEAYEDATTRDPEYYQPTGEVEE-GDVLGQGSPGLIFDSVLTNP 269
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|299470267|emb|CBN79571.1| (gamma carbonic anhydrase [Ectocarpus siliculosus]) HSP 1 Score: 244.588 bits (623), Expect = 8.959e-77 Identity = 122/264 (46.21%), Postives = 171/264 (64.77%), Query Frame = 0 Query: 7 SAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDP----AEIPGFGVPGRIFNHPLTVP 266 +A G AAR GR+ + G LE PY E L ST+ + GK P+ + +FVAP+AS+IG+V+VG+GAS+WYG+ +RGDV + +G +++GD AVVHVA L G+ PT +GN V +GPRA IHACTL+D+ VGAGA V+D A V S A +APGA ++P TVP+G LWAG PA +VR+++ E A+I A + L+ H +E K +++E DE W +K R P Y ++ + D ++ G GVPGR+FN L P Sbjct: 7 TAVGMAARRVGRSLDGMGAALETHPYTEKLLASTRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGSVVRGDVNHVVIGAGSSVGDSAVVHVAGLAGNKPTIVGNNVVIGPRATIHACTLKDDCMVGAGATVMDGATVSSGAMVAPGATVSPNITVPTGQLWAGTPAVYVRDISELEAASIVTTAAETQALSLAHASECEKGPLEIELDERKWDEKASRDPTYVFQVPEEGDDNLAYNDVEGQGVPGRVFNTNLRSP 270
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|1210515167|dbj|GAX25879.1| (hypothetical protein FisN_6Hh083 [Fistulifera solaris]) HSP 1 Score: 238.81 bits (608), Expect = 8.278e-75 Identity = 124/262 (47.33%), Postives = 169/262 (64.50%), Query Frame = 0 Query: 9 FGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVPLPEG 270 +A R G A + AGK +E+ Y E L PST+ ++ G P + FVAPSAS+IGNV +GKG+S+WYGAT+RGDV +T+G++T+IGDR+VVHVAK++GD PT IG+ VT+GP A++HA TL+D +G AQV+D AVV+ A +AP +V+TPG +P+G LWAG PAK VR LT E+++ + + LA H E +KDY Q+ +E D + PR K KD ++ G G PGRIF LT P G Sbjct: 12 LASAMRKVGSALDGAGKGIEITKYTEKLVPSTRFVAVDGIGPTVSAECFVAPSASVIGNVSIGKGSSIWYGATIRGDVNEVTIGDRTSIGDRSVVHVAKIQGDFPTHIGSGVTIGPGALVHAATLKDGCVIGEAAQVMDGAVVEEKAYVAPASVVTPGTKIPAGELWAGAPAKKVRALTEAELSSAAEAVLQTAILAQEHAIENAKDYKQI-LEEAELADIAEHLDESSPR-KPIKDINDVLGQGPPGRIFRSTLTHPYEAG 271
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|1210519799|dbj|GAX21351.1| (hypothetical protein FisN_6Lh083 [Fistulifera solaris]) HSP 1 Score: 234.958 bits (598), Expect = 1.300e-73 Identity = 122/253 (48.22%), Postives = 165/253 (65.22%), Query Frame = 0 Query: 14 RAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDPKDPAEIPGFGVPGRIFNHPLTVP 266 R G A + AGK +E+ Y E L PST+ ++ G P + FVAPSAS+IGNV +GKG+S+WYGAT+RGDV +T+G++T+IGDR+VVHVAK++GD PT IGN VT+G A++HA TL+D +G AQV+D AVV+ A +AP +V+TPG + +G LWAGVPAK VR LT E+++ + + LA H E +KDY Q+ +E D + PR K KD ++ G G PGRIF LT P Sbjct: 2 RKVGSALDGAGKGIEITKYTEKLVPSTRFVAVDGIGPTVSAECFVAPSASVIGNVSIGKGSSIWYGATIRGDVNEVTIGDRTSIGDRSVVHVAKIQGDFPTHIGNGVTIGSGALVHAATLKDGCVIGEAAQVMDGAVVEEKAFVAPASVVTPGTKISAGELWAGVPAKKVRALTEAELSSAAEAVLQTAMLAQEHAIENAKDYKQI-MEEAELADIAEHLDESSPR-KPIKDINDVLGQGPPGRIFRSTLTHP 252
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|695378176|ref|XP_009516211.1| (hypothetical protein PHYSODRAFT_537494 [Phytophthora sojae] >gi|348689122|gb|EGZ28936.1| hypothetical protein PHYSODRAFT_537494 [Phytophthora sojae]) HSP 1 Score: 229.18 bits (583), Expect = 2.079e-71 Identity = 111/218 (50.92%), Postives = 153/218 (70.18%), Query Frame = 0 Query: 10 GAAARAAGRAFENAGKLLE-VAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAW 226 G A R+ G+ + G LE Y EHL PST+ + G+AP E FVAP+AS+IG+V+VGKG+S+WY AT+RGDV IT+GE T I D+AVVHVAK+ D PTKIGN VTVGP A++HACT++D +G GAQVLD AVV + + + G+++T GK VPSG LW+GVPA+++R+LTAEE+ +++ + +LA H E +K + + EAD E + Sbjct: 7 GKAIRSLGQTIDRVGVSLEGKLTYTEHLNPSTRAVKNLGRAPKFEEGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENTNIQDQAVVHVAKIHQDIPTKIGNNVTVGPNAIVHACTIQDHCIIGTGAQVLDGAVVGAKSIVTAGSIVTMGKQVPSGQLWSGVPARYLRDLTAEEMQFMQQCSAEYTQLAEQHAEECAKSFEEYEADTERF 224
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|673017780|ref|XP_008862851.1| (hypothetical protein H310_01513 [Aphanomyces invadans] >gi|574482054|gb|ETW09046.1| hypothetical protein H310_01513 [Aphanomyces invadans]) HSP 1 Score: 226.483 bits (576), Expect = 1.956e-70 Identity = 108/220 (49.09%), Postives = 155/220 (70.45%), Query Frame = 0 Query: 6 LSAFGAAARAAGRAFENAGKLLEVA-PYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEE 224 + A G RA G+ + G +E A Y E L PST++++ GG PA+ T FVAP+AS+IG V +G+G+SVWYGAT+RGDV +IT+G+ T I D+AVVH AK+ D PT IGN VT+GP+A+IHA + ++ +G GAQVLD AVV ++ + G+++T GK+VP+G LW+G+PA+ VR+LT EEI IK+ ++ EL+ H E SK + ++EAD+E Sbjct: 1 MQAIGNTLRAFGQKLDKVGVSIEGALSYTERLVPSTRLVNHGGHKPALASTTFVAPNASVIGEVSIGQGSSVWYGATVRGDVNAITIGDNTNIQDQAVVHAAKIANDFPTIIGNNVTIGPKAIIHAAKISNQCIIGTGAQVLDGAVVGENSIITAGSIVTQGKSVPAGQLWSGIPARAVRDLTTEEIEFIKQCSLDYVELSEAHSVEASKSFEEIEADKE 220
BLAST of EWM28838.1 vs. NCBI_GenBank
Match: gi|566026250|gb|ETI49161.1| (hypothetical protein F443_06919 [Phytophthora parasitica P1569] >gi|567963557|gb|ETK89052.1| hypothetical protein L915_06794 [Phytophthora parasitica] >gi|567992264|gb|ETL42459.1| hypothetical protein L916_06736 [Phytophthora parasitica] >gi|568021544|gb|ETL95631.1| hypothetical protein L917_06603 [Phytophthora parasitica] >gi|568051931|gb|ETM48826.1| hypothetical protein L914_06698 [Phytophthora parasitica] >gi|570329948|gb|ETO77896.1| hypothetical protein F444_06984 [Phytophthora parasitica P1976] >gi|570953674|gb|ETP18931.1| hypothetical protein F441_06922 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 225.713 bits (574), Expect = 4.091e-70 Identity = 109/218 (50.00%), Postives = 153/218 (70.18%), Query Frame = 0 Query: 10 GAAARAAGRAFENAGKLLE-VAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAW 226 G A R+ G+ + G LE Y EHL PST+ + G++P E+ FVAP+AS+IG+V+VGKG+S+WY AT+RGDV IT+GE T I D+AVVHVAK+ D PTKIG+ VTVGP A++HACT++D +G GAQVLD AVV + + + G+++T GK VPSG LW+GVPA+++R+LTAEE +++ + +LA H E +K + + EAD E + Sbjct: 7 GKAIRSLGQTIDRVGVSLEGKFTYTEHLNPSTRAVKNLGRSPKFEESVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENTNIQDQAVVHVAKIHKDIPTKIGSNVTVGPAAIVHACTIQDHCIIGTGAQVLDGAVVGAKSIITAGSIVTKGKQVPSGQLWSGVPARYLRDLTAEETQFMQQCSAEYTQLAEQHAEECAKTFEEYEADTERY 224 The following BLAST results are available for this feature:
BLAST of EWM28838.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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