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Properties
| Property Name | Value |
|---|
| Product | tetratricopeptide repeat-containing protein |
| Orig transcript id | gnl|cribi|Naga_100133g17.1504.mrna |
| Orig protein id | gnl|cribi|Naga_100133g17.1504 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:241048..244878 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1825 ID=rna1825|Name=rna1825|organism=Nannochloropsis gaditana|type=mRNA|length=1334bp
AGCACGAGGGATTGGGAAATCTTCGGCTCCTTTATTATTGGGCTCCAATA
ATTCAAAATTATATTCGGATTTCGAGCTTCTCCCTTTTTTTGCGCGAAGT
TCGACCCAGCCTATTCATGGAGCTGCCCACTTATACGACTACCCCTCCTT
CCGGAGGCATACACTATACATTTCAAGCCGAGTATTTTTTATCACTCAAT
TTTTTGAGTCACGTTTTGGTGGTTTCGAGTCTCAGCCCGACGTTTATCCG
TGATATTCCTGTCATTCTTACCCTCATCATCAAGCATGCACTCTACTTAG
ACTGCTATATTTTGATTGAATCCCTTTCAGCATGGAATATCCGCGTGCAG
AACGTAATAAACTGGTGACGGCATTGATCTTGCACCTTGTCTCATTTCAT
GCGCTTTCTCGCGCCCAGATACAGTAAGACAGGAATCATGCTCAGCACCG
CAAAGTTCTCACTGCTCCCGCAGCGGCGCACGTCTTCTATAGTTTTGGAT
CTCAATATTCGATCTAAAAGAATGCAGGTAACATTAAGGAATGCGAATTA
TCTGCTTCACTCAAAAAAATCGGGCCTACAAGAATCTTGCACAGCCCGCC
TTTCCTGCCATCTACAGTATGCATCATTACCAACATCTTCCGCCTGCCGC
CTTCGAAGCCTTCCTGGACGAGGCTACCAATCACCTCGCACCTTCTCTTC
CACGGCAGGCGACGGAAAGGCAGTATTGATTTATACTGGTGCGCATGCAG
GCGTCATTCGCACGCTTAAACGCGTCTCACTGACCACCTGTATCATTGGT
CTTTTTTCAACGCCTTTTTTTCTCACCTTGGGATCGGAATCCGTACCTAT
GGCTGCTAACGTCGCGCTAACTGGCATTGTCCTTCTGGCTACGTGCGGGC
CCACAATTCTCCTTCATGCCTTCACCAAACCTTACATTTTTGCTCTGCGT
GTCGCTCCATTTGTGACCGCCGATAACGATTTGGAGATTTCTGACAGCGG
TGATAAGAGTGACAGAGCTGTGAGGAGAAATACAACTCCCGACATGCATT
TTTCGGCAGACACAATCGACTTTCTCTCTCGTCGCATCACCACCTCTTTC
AACTTGTCTGATGTGAAACCTCTCCCCAATTCCACCCGTCCCTTTGTCAG
CTTCAGTGCACGAGACCGCTTATATTTCGTACACGGGGAAACATTCCCTG
ACAAACACCTTTTACACAGTTTGCTTGGACGTCCTCTTAAAAAAAGTGAG
CTCGAAGGCAGTGAACAACCAAATTAAGGGCCTGTAAAAGGAAGTTAAAT
CTGATACTAAAACACGTACAGGAGCTTAAATAAC back to topprotein sequence of rna1825 >rna1825-protein ID=rna1825-protein|Name=rna1825|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQC
LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCE
PFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESV
FDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDT
YLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAA
LASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC back to topmRNA from alignment at CM002458.1:241048..244878+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1825 ID=rna1825|Name=rna1825|organism=Nannochloropsis gaditana|type=mRNA|length=3831bp|location=Sequence derived from alignment at CM002458.1:241048..244878+ (Nannochloropsis gaditana)
AGAGCAAAAATGTAAGGTTTGGTGAAGGCATGAAGGAGAATTGTGGGCCC
GCACGTAGCCAGAAGGACAATGCCAGTTAGCGCGACGTTAGCAGCCTAGG
GGGCGTGACAGTGAGGATAATTTTGGAAGAGCAGAGCATGGAGACGTACA
GTATGAGGAGAAATCCAGCCCATACAAACTTTACACTCGTGCATGCCCTT
TTTCTGACAGAAGGTGTCACTAAAGTCATATTCAATTTAAAAAATCCGCG
CGCGTAAGAATAAGATTACGCCTACTCATGTGTTGGAGTCACCCCGCGCA
AAATAGATTCCCATTTTCTGATTATTACCTACCATAGGTACGGATTCCGA
TCCCAAGgtgagaaaaaaaggcgtTGAAAAAAGACCAATGATACAGGTGG
TCAGTGAGACGCGTTTAAGCGTGCGAATGACGCCTGCATGCGCACCAGTA
TAAATCAATACTGCCTTTCCGTCGCCTGccgtggaagagaaggtgcGAGG
TGATTGGTagcctcgtccaggaaggCTTCGAAGGCGGCAGGCGGAAGATG
TTGGTAATGATGCATACTGTAGATggcaggaaaggcgggcTGTGCAAGAT
TCTTGTAGGCCCGATTTTTTTGAGTGAAGCAGATAATTCGCATTCCTTAA
TGTTACCTGCATTCTTTTAGATCGAATATTGAGATCCAAAACTATAGAAG
ACGTGCGCCGCTGCGGGAGCAGTGAGAACTTTGCGGTGCTGAGCATGATT
CCTGTCTTACTGTATCTGGGCGCGAGAAAGCGCATGAAATGAGACAAGGT
GCAAGATCAATGCCGTCACCAGTTTATTACGTTCTGCACGCGGATATTCC
ATGCTGAAAGGGATTCAATCAAAATATAGCAGTCTAAGTAGAGTGCATGC
TTGATGATGAGGGTAAGAATGACAGGAATATCACGGATAAACGTCGGGCT
GAGACTCGAAACCACCAAAACGTGACTCAAAAAATTGAGTGATAAAAAAT
ACTCGGCTTGAAATGTATAGTGTATGCCtccggaaggaggggtagTCGTA
TAAGTGGGCAGCTCCATGAATAGGCTGGGTCGAACTTCGCgcaaaaaaag
ggagaagcTCGAAATCCGAATATAATTTTGAATTATTGGAGCCCAATAAT
AAAGGAGCCGAAGATTTCCCAATCCCTCGTGCTGGTCAATGTCAAAACAG
CCGCCCGGAAAGCCACTGCTGTGGGTGGATGTATGGGTAAAGGATTGTGA
AAAATTCAACGGCTGCGTGAGTAGAAGCGAGTACCATTTTGATGCTAGAA
CGTACTGGCAAAAACTTGAATGGCAAGGTGAAATACACCTCGCGCCCGAG
CCAGCAGTGTCtggttgggggagggaggcccccGAACTGACGCTATCGAA
CTGGATTCGACTACGAAATGGGGGATAGTGGACAGATTGTGGTACGTATG
ACGGTCCTCGATTATGAAAGAGCCGCTCTGTTTTTTAAATGATGTGATGT
GCACATTTTGGTGGAGAGTCACATGTTGCTAGTCGAAAAAGTGCTCTCTT
ATCCTAAGCTTTGTACCTGTGGCCTCCATCTTCAAGCTAAATGGATTTGT
CATCCAGATCGTTTTAGGGTAATCCTACTATATTCACTGCGCTAATTTAC
CGCTTCAAATCCTTTCACATTAATAGTGACGACCACGACGCAATTTAGGC
GTTTTCACAAGAAGCATGTGCAGTAGTAATACTTTCCACCATCATGTGCA
CGACGATGAGCGAGTCGACCGTGCAAGGGGCTTGCTCTGCGAAGGGGCCT
CATTGCTCGTGCAGACTCAAGAGAGCACCGATATCATTGACTCCAGCCGA
CACCTTCAGCAATGTCTAGACAAATTTGACTGTGCATTACGCCTCGCTCC
ACATCTGCGGGCTCATGCGGTAAGGGGTTGGGATGTGTGGGCGCTTGAGG
TATGAAGGTCGTGATGCTATGGTATCTAGCAATGTGGACTAAAACCCGGC
TATCTGTGCACGATGAAAGCTCGTAGAGGGTGGTCCTCCGTCCTAGTTGG
TAGTCTGACGAAATTCGATGTATTGTGCTATTGAAATACTACTTGACACT
TTCTTCCTTAGAAGAAACAATCTGCACTCATTAGATTTGCCCAtggcttt
ctcctctcctttccatcccttttcTCCAGTGGGAAAGAGGTTTCGTCCTC
CTATATTTGAATCGCATTAAAGAAGCAGCTGACCAGTTCGCCTATTGCAC
GTCCTTGGATCCGGATGACTGCGAGCCCTTTCTCTGGCGCTCATTGGTGC
GTTGTCAACGGAGGGCATTCGTATAGGTGAAAGTCATCGAGATACGTACG
CCGAGGAAAATATCCAGGATTTTTCAGGGCATGAGATGCTTATTCCTGTA
ATACAATGCCCAAGAAAATTTTCTTACACATAACCTGCGAGAGGTAACTA
AACCGCCCCCATCAATCTGCATGCTCTCTCTTTCATTCGTCAGTGCATCG
CCAAGCTCCAAGGATGGAACACCGGCCTCGCAGTCCTGGATCAGTTCCAC
GGGTACGACAACAGACTCTGCATGATGGAGGTGCTTGCTCTGTATAAGGG
AAAGACAAATTTGGAGAGCGTCTTTGACTGTGCCTGCGGGGACCCACACT
CCGCCGCACGGGCTTCGTTTGCGTGCGCGCTCTTCTTCGAGGCGCATGGG
ACGAGGGCAGCAGAAAAAATGTCTCTACCCTTGCTGCACGCGGTGGCCAC
AGTCCACTGTGGGGGCGACACCTACTTGCAGTCCCTGGCCCGCATCCACA
TGCGTCACGTCCAGGATAGCCTCCACTCTATCCATGCTCATGCCCAAGAC
GGGCGCCGtacccctctctcctgtggcttcccctcttcttctacCGCGTC
GACCGTCTCCTCTCCAGCAGCGTTGGCTTCGCCCACGGCTCTCAGCACAG
AGATTGCCGACGAGAAAGGGCGCAAGTATGATACTCCCTCCGTGCCGCTC
TGTAGCCGTGCTGCCAAGGCAGCCGTTCTTAGAAGAGCCCTTGTAAAAAA
TAGTTGTTGAGGGATGGGACTGTCTGGGCATTTGGCTCAGTGTGTTTTGA
GGTGTCTTTTGGGGGATTGTGCGGGAGGTTGTAGGGGAGACTCAAAAAAT
AGAGGGCGGAACATGCGTCCTAGACCAAAAAAATATGACAGGGTGACAGG
TTGCTCTCCATTGAGTCGTGGACAAATTATGAAATATTCAATTCAAAATA
CGAGGGAAGCACATAGACAGTGAGGAGTATGAAGAGAGAAAAATGAGGAT
GAAAGCAGAGTCAAAAAGAGTAAGACGTGTGCAAGACTGCAGCTCCGTGC
CTCTAGGCACTCAGCCTGACGTCGTAATGGAAAGGCATTTCCATTCGTCA
TGGTAAACAAATCTTCATTGGAAGATCACAGTTAGAAGTATGATATTGAA
AAGAGTTACAGGCATTCTGCCCGTCTTCACATTGAACCGGTGTGGTCGAT
AGTAGCGCGAGAATTGATTGACTTGGTTGCAGTGACTTGGAGCACCTCGA
TGCGGCGCGTGTCGCATTTTCCACTCGGCCGTGGAGGTATTCACGTGTTT
TTTGAAAGGGTAGACTTTTTTGCGTGAGCACCGGCATGTGCTCCGGGGGG
GTAAAACTTGATGCTTAAGCGCCGTCGTGGCCCCCCCAGATAACGATTAG
CCTGGTAGCCCAGGTGTACATGTGGATGTATGCCGGGGTATATCAGGGTG
TACATGCATTGAAAAACGAATAGAAGATGATTTGTCCGTCGAACAGCGAA
GAAGACAAAAACTTCAGAAACGCAGAGCACT back to topCoding sequence (CDS) from alignment at CM002458.1:241048..244878+ >rna1825 ID=rna1825|Name=rna1825|organism=Nannochloropsis gaditana|type=CDS|length=2664bp|location=Sequence derived from alignment at CM002458.1:241048..244878+ (Nannochloropsis gaditana)
ATGTGCAGTAGTAATACTTTCCACCATCATGTGCACGACGATGAGCGAGT
CGACCGTGCAAGGGGCTTGCTCTGCGAAGGGGCCTCATTGCTCGTGCAGA
CTCAAGAGAGCACCGATATCATTGACTCCAGCCGACACCTTCAGCAATGT
CTAGACAAATTTGACTGTGCATTACGCCTCGCTCCACATCTGCGGGCTCA
TGCGTGGGAAAGAGGTTTCGTCCTCCTATATTTGAATCGCATTAAAGAAG
CAGCTGACCAGTTCGCCTATTGCACGTCCTTGGATCCGGATGACTGCGAG
CCCTTTCTCTGGCGCTCATTGTGCATCGCCAAGCTCCAAGGATGGAACAC
CGGCCTCGCAGTCCTGGATCAGTTCCACGGGTACGACAACAGACTCTGCA
TGATGGAGGTGCTTGCTCTGTATAAGGGAAAGACAAATTTGGAGAGCGTC
TTTGACTGTGCCTGCGGGGACCCACACTCCGCCGCACGGGCTTCGTTTGC
GTGCGCGCTCTTCTTCGAGGCGCATGGGACGAGGGCAGCAGAAAAAATGT
CTCTACCCTTGCTGCACGCGGTGGCCACAGTCCACTGTGGGGGCGACACC
TACTTGCAGTCCCTGGCCCGCATCCACATGCGTCACGTCCAGGATAGCCT
CCACTCTATCCATGCTCATGCCCAAGACGGGCGCCGtacccctctctcct
gtggcttcccctcttcttctacCGCGTCGACCGTCTCCTCTCCAGCAGCG
TTGGCTTCGCCCACGGCTCTCAGCACAGAGATTGCCGACGAGAAAGGGCG
CAAGTATGATACTCCCTCCGTGCCGCTCTGTAGCCGTGCTGCCAAGGCAG
CCGTTCTTAGAAGAGCCCTTGTAAAAAATAGTTGTTGAATGTGCAGTAGT
AATACTTTCCACCATCATGTGCACGACGATGAGCGAGTCGACCGTGCAAG
GGGCTTGCTCTGCGAAGGGGCCTCATTGCTCGTGCAGACTCAAGAGAGCA
CCGATATCATTGACTCCAGCCGACACCTTCAGCAATGTCTAGACAAATTT
GACTGTGCATTACGCCTCGCTCCACATCTGCGGGCTCATGCGTGGGAAAG
AGGTTTCGTCCTCCTATATTTGAATCGCATTAAAGAAGCAGCTGACCAGT
TCGCCTATTGCACGTCCTTGGATCCGGATGACTGCGAGCCCTTTCTCTGG
CGCTCATTGTGCATCGCCAAGCTCCAAGGATGGAACACCGGCCTCGCAGT
CCTGGATCAGTTCCACGGGTACGACAACAGACTCTGCATGATGGAGGTGC
TTGCTCTGTATAAGGGAAAGACAAATTTGGAGAGCGTCTTTGACTGTGCC
TGCGGGGACCCACACTCCGCCGCACGGGCTTCGTTTGCGTGCGCGCTCTT
CTTCGAGGCGCATGGGACGAGGGCAGCAGAAAAAATGTCTCTACCCTTGC
TGCACGCGGTGGCCACAGTCCACTGTGGGGGCGACACCTACTTGCAGTCC
CTGGCCCGCATCCACATGCGTCACGTCCAGGATAGCCTCCACTCTATCCA
TGCTCATGCCCAAGACGGGCGCCGtacccctctctcctgtggcttcccct
cttcttctacCGCGTCGACCGTCTCCTCTCCAGCAGCGTTGGCTTCGCCC
ACGGCTCTCAGCACAGAGATTGCCGACGAGAAAGGGCGCAAGTATGATAC
TCCCTCCGTGCCGCTCTGTAGCCGTGCTGCCAAGGCAGCCGTTCTTAGAA
GAGCCCTTGTAAAAAATAGTTGTTGAATGTGCAGTAGTAATACTTTCCAC
CATCATGTGCACGACGATGAGCGAGTCGACCGTGCAAGGGGCTTGCTCTG
CGAAGGGGCCTCATTGCTCGTGCAGACTCAAGAGAGCACCGATATCATTG
ACTCCAGCCGACACCTTCAGCAATGTCTAGACAAATTTGACTGTGCATTA
CGCCTCGCTCCACATCTGCGGGCTCATGCGTGGGAAAGAGGTTTCGTCCT
CCTATATTTGAATCGCATTAAAGAAGCAGCTGACCAGTTCGCCTATTGCA
CGTCCTTGGATCCGGATGACTGCGAGCCCTTTCTCTGGCGCTCATTGTGC
ATCGCCAAGCTCCAAGGATGGAACACCGGCCTCGCAGTCCTGGATCAGTT
CCACGGGTACGACAACAGACTCTGCATGATGGAGGTGCTTGCTCTGTATA
AGGGAAAGACAAATTTGGAGAGCGTCTTTGACTGTGCCTGCGGGGACCCA
CACTCCGCCGCACGGGCTTCGTTTGCGTGCGCGCTCTTCTTCGAGGCGCA
TGGGACGAGGGCAGCAGAAAAAATGTCTCTACCCTTGCTGCACGCGGTGG
CCACAGTCCACTGTGGGGGCGACACCTACTTGCAGTCCCTGGCCCGCATC
CACATGCGTCACGTCCAGGATAGCCTCCACTCTATCCATGCTCATGCCCA
AGACGGGCGCCGtacccctctctcctgtggcttcccctcttcttctacCG
CGTCGACCGTCTCCTCTCCAGCAGCGTTGGCTTCGCCCACGGCTCTCAGC
ACAGAGATTGCCGACGAGAAAGGGCGCAAGTATGATACTCCCTCCGTGCC
GCTCTGTAGCCGTGCTGCCAAGGCAGCCGTTCTTAGAAGAGCCCTTGTAA
AAAATAGTTGTTGA back to top
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