EWM28850.1, cds1821 (CDS) Nannochloropsis gaditana

Overview
NameEWM28850.1
Unique Namecds1821
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:242763..242966 +
Alignment locationCM002458.1:243227..243343 +
Alignment locationCM002458.1:243541..244107 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28850.1
Producttetratricopeptide repeat-containing protein
Orig transcript idgnl|cribi|Naga_100133g17.1504.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:242763..242966 +
CM002458.1supercontigCM002458.1:243227..243343 +
CM002458.1supercontigCM002458.1:243541..244107 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|585111276|gb|EWM28849.1| (tetratricopeptide repeat-containing protein [Nannochloropsis gaditana] >gi|585111277|gb|EWM28850.1| tetratricopeptide repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 295
            MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC
Sbjct:    1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 295          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|553184749|ref|XP_005854140.1| (hypothetical protein NGA_0203900 [Nannochloropsis gaditana CCMP526] >gi|422294917|gb|EKU22217.1| hypothetical protein NGA_0203900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 482.256 bits (1240), Expect = 6.968e-171
Identity = 255/295 (86.44%), Postives = 255/295 (86.44%), Query Frame = 0
Query:    1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 295
            MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHA                                       CIAKLQGWN GLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC
Sbjct:    1 MCSSNTFHHHVHDDERVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHA---------------------------------------CIAKLQGWNAGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHSIHAHAQDGRRTPLSCGFPSSSTASTVSSPAALASPTALSTEIADEKGRKYDTPSVPLCSRAAKAAVLRRALVKNSC 256          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|585111278|gb|EWM28851.1| (aldo keto reductase, partial [Nannochloropsis gaditana])

HSP 1 Score: 116.701 bits (291), Expect = 1.788e-25
Identity = 83/228 (36.40%), Postives = 116/228 (50.88%), Query Frame = 0
Query:   13 DDE-RVDRARGLLCEGASLLVQTQESTDIIDSSRHLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQ-GWNTGLAVL-DQFHGYDNRLCMMEVLALY--------------KGKTN----LESVFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIHMRHVQDSLHS 219
            D+E R++ AR LL  G + LV+             L+  L   + AL ++P LR+ AWERGF L Y      AADQF+ C  +DPDD EP+LWR L  AK + GW    A L D F G+D R+ MM +L+L+              +GK      +++V +   GD H++ R SFACAL+ EA G           L  V +    GD Y++ +AR H+R +   L S
Sbjct:    2 DEELRLETARELLARGCAELVRRDAP---------LEPALQLIEAALFISPTLRSCAWERGFALYYKGAWAAAADQFSACCQVDPDDLEPYLWRCLADAKGEGGWEGARAGLHDGFKGHDRRVGMMNILSLFLEEEEEHGVRGSDEEGKEKRLRAVQAVLEYGEGDCHASQRISFACALYLEARGMEEEALAV---LEEVTSRKEDGDVYMREMARNHLRVLGRRLAS 217          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|654351343|ref|WP_027844535.1| (hypothetical protein [Mastigocoleus testarum] >gi|959133454|gb|KST68539.1| hypothetical protein BC008_01345 [Mastigocoleus testarum BC008] >gi|959133471|gb|KST68554.1| hypothetical protein BC008_01420 [Mastigocoleus testarum BC008])

HSP 1 Score: 81.2629 bits (199), Expect = 1.124e-14
Identity = 53/165 (32.12%), Postives = 75/165 (45.45%), Query Frame = 0
Query:   46 HLQQCLDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLESVFDCACG-DPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCGGDTYLQSLARIH 209
             + + +  FD A +L P +  + W+RG    Y NR  E A QF    +++  D E  +WR LC+A+LQG +     L      D RL M +V  LY G  + E V       D  S   +     L+FEA   R  E  S  +  AV +     D Y+  LAR+H
Sbjct:   44 QVNESIADFDAAEKLKPSITPYLWQRGLSYYYANRFAEGASQFEIDLTVNSQDVEETVWRYLCVARLQGSDEARKSLLSVKN-DPRLVMRKVYELYGGNCSTEDVLKIGNPFDKRSKFYSHLYVGLYFEA-SDRTEEAQSY-ITKAVDSYRI--DDYMWYLARVH 203          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|567202725|ref|XP_006408047.1| (hypothetical protein EUTSA_v10021364mg [Eutrema salsugineum] >gi|557109193|gb|ESQ49500.1| hypothetical protein EUTSA_v10021364mg [Eutrema salsugineum])

HSP 1 Score: 81.6481 bits (200), Expect = 1.662e-14
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 0
Query:   51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209
            + +FD A+ L P  +A+ W+RG  L YL+R +E A+QF    + +P+D E  +W  LC A+L G +       +  G D+R  M E   L+K   + E  V D + G       AS    L++EA G   + K  +       T  CG       D Y+ SLA++H
Sbjct:   89 VTEFDRAIVLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEARLHGIDGARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSESAKFHI-------TAACGSPYGQRSDDYMASLAKVH 246          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|727582356|ref|XP_010464092.1| (PREDICTED: uncharacterized protein LOC104744703 [Camelina sativa])

HSP 1 Score: 81.2629 bits (199), Expect = 2.324e-14
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0
Query:   51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209
            + +FD A+ L P  +A+ W+RG  L YL+R +E A+QF    + +P+D E  +W  LC A+L G +       +  G D+R  M E   L+K   + E  V D + G       AS    L++EA G     K  +       T  CG       D Y+ SLA++H
Sbjct:   90 VTEFDRAVVLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEARLHGVDVARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVKDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHI-------TASCGSPYGQRSDDYMASLAKVH 247          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|727630110|ref|XP_010486019.1| (PREDICTED: uncharacterized protein LOC104764226 [Camelina sativa])

HSP 1 Score: 80.8777 bits (198), Expect = 2.809e-14
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0
Query:   51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209
            + +FD A+ L P  +A+ W+RG  L YL+R +E A+QF    + +P+D E  +W  LC A+L G +       +  G D+R  M E   L+K   + E  V D + G       AS    L++EA G     K  +       T  CG       D Y+ SLA++H
Sbjct:   90 VTEFDRAVVLDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEARLHGVDVARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVKDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHI-------TAACGSPYGQRSDDYMASLAKVH 247          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|727411317|ref|XP_010430058.1| (PREDICTED: uncharacterized protein LOC104714379 [Camelina sativa])

HSP 1 Score: 80.4925 bits (197), Expect = 3.963e-14
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0
Query:   51 LDKFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209
            + +FD A+ L P  +A+ W+RG  L YL+R +E A+QF    + +P+D E  +W  LC A+L G +       +  G D+R  M E   L+K   + E  V D + G       AS    L++EA G     K  +       T  CG       D Y+ SLA++H
Sbjct:   89 VTEFDRAVILDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEARLHGVDVARKQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVKDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHI-------TAACGSPYGQRSDDYMASLAKVH 246          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|30679555|ref|NP_683531.2| (Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >gi|27311659|gb|AAO00795.1| Unknown protein [Arabidopsis thaliana] >gi|30023732|gb|AAP13399.1| At3g05625 [Arabidopsis thaliana] >gi|332640747|gb|AEE74268.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] >gi|1032289471|gb|OAP03798.1| hypothetical protein AXX17_AT3G05200 [Arabidopsis thaliana])

HSP 1 Score: 80.1073 bits (196), Expect = 5.240e-14
Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 0
Query:   53 KFDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFHGYDNRLCMMEVLALYKGKTNLES-VFDCACGDPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG------GDTYLQSLARIH 209
            +FD A+ L P  +A+ W+RG  L Y++R +E A+QF    + +P+D E  +W  +C A+L G +       +  G D+R  M E   L+K   + E  V D + G       AS    L++EA G     K  L       T  CG       D Y+ SLA++H
Sbjct:   91 EFDRAIILDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVARTQFLEV-GRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHL-------TAACGSPYGQRSDDYMASLAKVH 246          
BLAST of EWM28850.1 vs. NCBI_GenBank
Match: gi|1001609431|gb|KXS13219.1| (hypothetical protein M427DRAFT_156882 [Gonapodya prolifera JEL478])

HSP 1 Score: 77.7962 bits (190), Expect = 1.456e-13
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 0
Query:   54 FDCALRLAPHLRAHAWERGFVLLYLNRIKEAADQFAYCTSLDPDDCEPFLWRSLCIAKLQGWNTGLAVLDQFH-GYDNRLCMMEVLALYKGKTNL-ESVFDCACG-DPHSAARASFACALFFEAHGTRAAEKMSLPLLHAVATVHCG-GDTYLQSLARIHMR 211
            FD A+RL P +R   W+RG  L Y +R ++ A+QFA   S +P+D E  +W  LC++++  +N  +A     H G D R  M  V  ++     + +++ D A   D H +  A     L++EAH    +E     L+ ++ T +      Y+ +LAR+H R
Sbjct:   26 FDDAMRLDPKIRPRLWQRGLSLYYADRFQDGAEQFAIDVSYNPNDTEESVWHFLCLSRM--YNPSVARSRWLHVGQDPRPVMRAVYDVFHNPDAIPQAILDAARDTDGHDSFYAKLYVGLWWEAHEGPTSEGARRFLVESLDTGYGKTSQDYMVALARVHCR 185          
The following BLAST results are available for this feature:
BLAST of EWM28850.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111276|gb|EWM28849.1|0.000e+0100.00tetratricopeptide repeat-containing protein [Nanno... [more]
gi|553184749|ref|XP_005854140.1|6.968e-17186.44hypothetical protein NGA_0203900 [Nannochloropsis ... [more]
gi|585111278|gb|EWM28851.1|1.788e-2536.40aldo keto reductase, partial [Nannochloropsis gadi... [more]
gi|654351343|ref|WP_027844535.1|1.124e-1432.12hypothetical protein [Mastigocoleus testarum] >gi|... [more]
gi|567202725|ref|XP_006408047.1|1.662e-1431.93hypothetical protein EUTSA_v10021364mg [Eutrema sa... [more]
gi|727582356|ref|XP_010464092.1|2.324e-1431.93PREDICTED: uncharacterized protein LOC104744703 [C... [more]
gi|727630110|ref|XP_010486019.1|2.809e-1431.93PREDICTED: uncharacterized protein LOC104764226 [C... [more]
gi|727411317|ref|XP_010430058.1|3.963e-1431.93PREDICTED: uncharacterized protein LOC104714379 [C... [more]
gi|30679555|ref|NP_683531.2|5.240e-1431.71Tetratricopeptide repeat (TPR)-like superfamily pr... [more]
gi|1001609431|gb|KXS13219.1|1.456e-1330.86hypothetical protein M427DRAFT_156882 [Gonapodya p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1825rna1825Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications