EWM28854.1, cds1811 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|585111281|gb|EWM28854.1| (Derlin [Nannochloropsis gaditana]) HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 Query: 1 MGALAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQGA 316 MGALAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQGA Sbjct: 1 MGALAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQGA 316
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|294464565|gb|ADE77792.1| (unknown [Picea sitchensis]) HSP 1 Score: 171.4 bits (433), Expect = 8.955e-48 Identity = 106/311 (34.08%), Postives = 162/311 (52.09%), Query Frame = 0 Query: 5 AGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315 +GF NAPVTKG + AS++++ + L I++K LWRL TS F + + G++LLY FR FERQ+GS K+ F++ +T+ +T E+ I K I GLA PGP+G++ +LFV F+ +P + R ++ SDKS Y G QLLL ++ IP CG+ AG+LYR N+F +Q + LP+++ + + PL+ T+ R A R A + G +G +AP SE+AI L+ +GF+R + +RAL A N++ AA+ LL Sbjct: 6 SGFQNAPVTKGLVFICGIASIIAATQGRASFSSLSYQAIVKKLHLWRLVTSVFVFSSTSELMFGLYLLYYFRVFERQIGSNKYSVFILFATIFSTLFELMILVLF--KDSISGGLA--PGPYGIIVSLFVPFFLDIP-VSTR-FQIFSVRFSDKSFVYLAGLQLLLSSWKRSLIPGFCGVLAGLLYRMNIFRIQRIKLPKLVASTASWLFAPLVSGGSSTISSRRTATRETIDAPL------------------GQQFQGNLVAPTMAE---SEEAISALVSMGFDRSSAIRALAQARNDINAAADLLLNS 289
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|294460509|gb|ADE75831.1| (unknown [Picea sitchensis]) HSP 1 Score: 169.474 bits (428), Expect = 3.798e-47 Identity = 106/311 (34.08%), Postives = 162/311 (52.09%), Query Frame = 0 Query: 5 AGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315 +GF NAPVTKG + AS++++ + L I++K LWRL TS F + + G++LLY FR FERQ+GS K+ F++ +T+ +T E+ I K I GLA PGP+G++ +LFV F+ +P + R ++ SDKS Y G QLLL ++ IP CG+ AG+LYR N+F +Q + LP+++ + + PL+ T+ R A R A + G +G +AP SE+AI L+ +GF+R + +RAL A N++ AA+ LL Sbjct: 6 SGFQNAPVTKGLVFICGIASIIAATQGRASFSSLSYQAIVKKLHLWRLGTSVFVFSSTSELMFGLYLLYYFRVFERQIGSNKYSVFILFATIFSTLFELMILVLF--KDSISGGLA--PGPYGIIVSLFVPFFLDIP-VSTR-FQIFSVRFSDKSFVYLAGLQLLLSSWKRSLIPGFCGVLAGLLYRMNIFRIQRIKLPKLVASTASWLFAPLVSGGSSTISSRRTATRETIDAPL------------------GQQFQGNLVAPTMAE---SEEAISALVSMGFDRSSAIRALAQARNDINAAADLLLNS 289
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|168032238|ref|XP_001768626.1| (predicted protein [Physcomitrella patens] >gi|162680125|gb|EDQ66564.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 166.392 bits (420), Expect = 5.743e-46 Identity = 109/312 (34.94%), Postives = 159/312 (50.96%), Query Frame = 0 Query: 5 AGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQLAPPPPPPPA-SEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315 +GF NAPVTKG L AS+L + L L + ++K +LWRL TS F P+ + G++L+Y FR FERQ+GS K+ ++ ST +T E+A + + G+ L+PGP+G+++A FV F+ +P + RL + GA SDKS Y G QLLL ++ +P +CGL AG+LY+ N+ G++ V P+ L + PLL + LP R G G + AP PP A SE I LM +GF+R ++AL A N+V +A N LL+ Sbjct: 6 SGFHNAPVTKGIVLACGLASVLIGTQGGARALSLSYQKFVQKQQLWRLLTSPWVFSSTPEVLFGLYLVYFFRVFERQIGSNKYLFYVFFSTTTSTILEVAALAVIRDPTAL-TGIFLTPGPYGLIFASFVPFFFDIP-ISTRL-KFLGARFSDKSFVYLAGLQLLLSSWTQSLVPGVCGLLAGLLYKSNILGIRKVKFPEGLASAATRLFTPLLSS-----------------------NSTLPTTVR--GAAPNGRLLEHRFAPSAPPVSAQSEVHITTLMAMGFDRSDALQALAAARNDVALATNLLLES 289
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|168026322|ref|XP_001765681.1| (predicted protein [Physcomitrella patens] >gi|162683107|gb|EDQ69520.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 162.925 bits (411), Expect = 1.591e-44 Identity = 111/312 (35.58%), Postives = 166/312 (53.21%), Query Frame = 0 Query: 5 AGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGRE-GGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315 +GF NAPVTK + AS+L + L L +I++K +LWRL +S F + + G++L+Y FR FERQ+GS K+ F++ ST+++T+ E+ L + G++L+PGP+G+++ALFV F+ +P + R +V GA SDKS Y G QLLL ++ IP +CGL AG LY+ NV G++ V P+ L A + PLL + RGG RA G+ G + APP PP E+ I L+ +GF+R ++AL A N++ VA N LL+ Sbjct: 6 SGFHNAPVTKAIVMACGLASVLVGTQGGARALSLSYQKIVQKLQLWRLLSSPCVFSSTSELLFGLYLIYFFRVFERQIGSNKYLFFVLFSTIISTTLEVIALAALQDPTSL-TGISLTPGPYGLMFALFVPFFFDIP-ISTR-FKVFGARFSDKSFVYLAGLQLLLSSWKQSLIPGVCGLVAGFLYKSNVLGIKKVKFPEGLAAAAARLFAPLLSSNSAPPTARGG---------------------RASGQNGHAFQHRFAASAPPLTAPP--EEHIATLVAMGFDRSDAMQALAVARNDITVATNLLLES 291
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|1067062968|ref|XP_018015377.1| (PREDICTED: ubiquitin-associated domain-containing protein 2-like [Hyalella azteca]) HSP 1 Score: 163.696 bits (413), Expect = 1.820e-44 Identity = 118/328 (35.98%), Postives = 181/328 (55.18%), Query Frame = 0 Query: 5 AGFVNAPVTKGY--CLLVVGASL-LSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLV----LSTLLATSTEMAI--AGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSV-LLPQVLCRGVASVLEPLLQARRP--TMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQ----LAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQGA 316 GF NAPVTKG CL + SL + + H L + ++ KGE+WR+ ++++F + V+G L+Y FR FER+ GS KF S+L+ ++TLL T T +++ AG+ + G L PGP+G+++ LFV +Y +P H RV G ++ K++ Y +G QL TAI ALCG+ +G++YR NV +Q + +P V+ R A+ L PLL + P T+ G +R+ + ++ L+ R + G GR G P PPPP SED IQ L+ +GF+R V+ AL+ + N+V A++ LLQ A Sbjct: 11 TGFYNAPVTKGLMGCLFLTCTSLNVPLFAHLRRYLICNLPEVISKGEIWRILLAKLSFVDMKDLVVGFLLMYYFRIFERRYGSHKFASYLIANQCVTTLLETVTVLSLHYAGF-----DLHNGGHLPPGPYGLIFPLFVSYYCDIP--HVAQTRVLGVPITGKTLTYLLGLQLAYTSP-ATAISALCGVVSGLIYRHNVLYIQRLTFIPAVVGRFAAATLGPLLASAPPQETLTGATLELQRQEEMELWDQQMLMRQRGRHMQMEGDEGRRAGAELNGFLNPQPPPPPSEDQIQTLVAMGFDRQRVLSALRDSHNDVNTASHILLQQA 330
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|301103025|ref|XP_002900599.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262101862|gb|EEY59914.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 158.688 bits (400), Expect = 1.229e-42 Identity = 122/335 (36.42%), Postives = 161/335 (48.06%), Query Frame = 0 Query: 2 GALAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAI---AGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQ----ARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRG--------------GGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315 G L GF APVT + L V AS S H L LD IL + + WRL +SQ+ F LG++ ++ FR ERQ+GSRKFGS LV L++ + ++A + WL + GP+ ++ A V F +PKLHPR V G SDKS Y + +L ++ IP + G F G+L+R G + LP +C + +L PL + + R R E +RR R PG G+G GG GG L P P SEDAIQ LM LGF+R ++ALQ DNNVE AANRLL G Sbjct: 3 GDLRGFYGAPVTYAFSLAVGAASSASLLLDRGHLLALDRDAILSRSQYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAK--------TIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYML-MLVLFVRDFRALIPFMGGSFLGLLFRSTPLG--RLQLPSFVC-SILGLLHPLFKVVPASTLALQRQRRALEAQRRVNARFNRR---PGAPAVQGQGFRDQLLPGAGGAMPGGAPAAGGMLLPHMAAQPPSEDAIQQLMALGFDRERALQALQTTDNNVEAAANRLLNG 322
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|673026398|ref|XP_008867160.1| (hypothetical protein H310_04548 [Aphanomyces invadans] >gi|574477207|gb|ETW04204.1| hypothetical protein H310_04548 [Aphanomyces invadans]) HSP 1 Score: 157.147 bits (396), Expect = 3.316e-42 Identity = 111/320 (34.69%), Postives = 156/320 (48.75%), Query Frame = 0 Query: 4 LAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTM----RGRGGAERRRRRAGMAGR---EQLLPGGDRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQGA 316 L+GF PVT Y AS+ + + H L LD + + + WRL T A G+++L+ FR ERQ GS KFG+F++L +L TST + + WL L +PGP+ ++ AL V++Y VP L PRL + G +++DKS Y + + + L + TA P G+ G+LY+ + + +P L V P+ T+ R R E +RR+A GR Q + G R G G Q PP SEDAI L GLGF+R + ALQ +DNNVE AANRLL Sbjct: 5 LSGFYKTPVTYAYLSATGMASVAALFMDMRHQLTLDLVSVTKLSQYWRLLTCHFALDNGIAVAFGMYVLFQFRVIERQFGSNKFGTFIIL--VLLTSTALQV--WL--------KLPTTPGPYPLIGALAVIYYHNVPLLQPRLYSLLGLNVTDKSSIYGLLSLVCL-RSYSTAFPFATGVLVGLLYQSKYLPLSKLRVPGFLA-WFFEVFHPIFMVVPATVLQQQRQRHLLEAQRRQATAIGRGHSHQEVGHGFRDQLIPGMGQAPFHQRMPP------SEDAISQLTGLGFDRDRAIAALQASDNNVEAAANRLLNAT 304
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|1173960606|gb|OQS06718.1| (hypothetical protein THRCLA_01258 [Thraustotheca clavata]) HSP 1 Score: 155.992 bits (393), Expect = 8.544e-42 Identity = 110/322 (34.16%), Postives = 154/322 (47.83%), Query Frame = 0 Query: 4 LAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQ----ARRPTMRGRGGAERRRRRAGMAG------REQLLPGGDRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315 L G PVT Y S + + + + LD +I ++ + WRL TS F + G++L+++ R ERQ GS+KFGSF+VL L++ ++ + + K +++ GP+ ++ AL VL++ VPKL P +R G SDKS Y + L+ G T P L G+ G+LY+ + LP LC + P+ A R R E +RR A M REQL+P G GGG P P P SE AI+ L LGFER + AL+ ADNNVE AANRLL G Sbjct: 6 LGGLYKTPVTYAYMSATGLMSAAAIFFDRPNEMHLDLRKIGKQSQYWRLLTSHFGFGDGVAVAFGIYLIFSCRVLERQFGSKKFGSFVVLVMTLSSLLQIGLLKFKFVK-------SIASGPYALIGALMVLYFGNVPKLQPHFVRAMGIAFSDKSPTYFMMC-LVCFRGIDTITPFLTGVLVGLLYQTKSLPLHKFRLPSFLC-WFFEIFHPIFMVVPAAAAVQQRQRQLQEMQRRAAAMGQPNGQGFREQLIP------GMGGGM---------PIPVAPPSEAAIEQLTALGFEREQAIAALRTADNNVEAAANRLLNG 303
BLAST of EWM28854.1 vs. NCBI_GenBank
Match: gi|971506824|dbj|GAQ91389.1| (hypothetical protein KFL_007760080 [Klebsormidium nitens]) HSP 1 Score: 154.066 bits (388), Expect = 8.535e-41 Identity = 122/337 (36.20%), Postives = 167/337 (49.55%), Query Frame = 0 Query: 5 AGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGGDRALGRGGGGGREGGQ---------------LAPPP-----------PPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315 +GF NAPVTK L G SLL ++ L L I R+ ELWRL TS F P+ + G++L+Y FR FERQ+GS K+ F + ST+L+T+ ++A L G+ G+ L L GP+G+++A FV F+ +P + R V SDKS Y G QLLL G ++ IP + GL AG+ YR NVFG++ + P + V L+ PT G R AG PG + R GG +G LAP P PP E+A+Q L+ +GF+R VRAL A N+V +A N LL+G Sbjct: 6 SGFYNAPVTKAIILTSAGLSLLGGLHGTARLLSLSYECIFRRHELWRLLTSATIFSSTPEILFGLYLVYFFRIFERQVGSNKYTIFALSSTILSTAFQLASLVALEGRFS-GDLLTLCSGPYGLIFASFVPFFFDIP-VSAR-FSVMSLKFSDKSFVYLAGLQLLLSSGRQSIIPGISGLLAGLTYRSNVFGIRRLKFPDFISSFVERTFSFLISRTPPTASG-------GRVAGPGA-----PGTGPTIARRLGGPSQGFSDQLIGGNGGLPGGPFLAPQTGLGVAATAAASPAPPPPEEAVQTLVSMGFDRSQAVRALAQARNDVHMATNLLLEG 327 The following BLAST results are available for this feature:
BLAST of EWM28854.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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