rna1815, rna1815 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1815
Unique Name	rna1815
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	621
Alignment location	CM002458.1:216980..218494 -

Link to JBrowse

Properties


Property Name	Value
Product	Derlin
Orig transcript id	gnl\|cribi\|Naga_100133g6.1508.mrna
Orig protein id	gnl\|cribi\|Naga_100133g6.1508
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:216980..218494 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100133g6	gene1744	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28854.1	cds1811	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1815	rna1815-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:216980..218494-
coding sequence from alignment at CM002458.1:216980..218494-

mRNA sequence

>rna1815 ID=rna1815|Name=rna1815|organism=Nannochloropsis gaditana|type=mRNA|length=621bp
ATGGGGAAGGGAGCTGTCATGGAGAGCAGCAGCAGCAATGTCCTATCATC
CACTCCAACCACCCTCAGCCCTCTCGCCCAACGCGGGCCGCTGGTCATCA
CGCACACCGGGCTTTCTGGTCCTGCCATCCTCCGCCTCTCCGCCTTCGCT
GCCCGTCTCCTTGCTCTCCTCGACTACCAGGCCTCCTTTCGCATCGACTG
GCTCCCCGAATTCGCATACCCGGACGTTGTCCAACGCCTGCAGCGGGCGC
AGACGGCGAATGCTCGGAAGCACGTGGGCACCTATTGTCCTCTACTGACG
ACAACGGCAGCGGGAAGCGTATACGTGTCGAGGGGAAAGAGTATCCACAA
GGAAGAGTTCACAACGGCCGGGGGGGTCGCCTTGAAAGAGGTGGATTTCA
AAACCTTCGGGAGCAAACGCGTGGAAGGGCTCTATTTCGCTGGAGAGATC
CTGGACGTAGACGGCGTCACAGGAGGGTTTAATTTTATGAACTGCTGGAG
CGGCGGTTACATTGCGGGAAGGAGCCTCGCTCAAAGAATAATTGCGAGGG
ATGAGGATGGGAAGGACGGCGGGAGGGAGGGACAGGAAGGCGACCGGGAC
ACACGAGGATTAGGGTTATAA

protein sequence of rna1815

>rna1815-protein ID=rna1815-protein|Name=rna1815|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MGALAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELW
RLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATS
TEMAIAGWLGGKGRIGEGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRV
CGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSV
LLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAGMAGREQLLPGG
DRALGRGGGGGREGGQLAPPPPPPPASEDAIQMLMGLGFERGAVVRALQG
ADNNVEVAANRLLQGA

mRNA from alignment at CM002458.1:216980..218494-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1815 ID=rna1815|Name=rna1815|organism=Nannochloropsis gaditana|type=mRNA|length=1515bp|location=Sequence derived from alignment at CM002458.1:216980..218494- (Nannochloropsis gaditana)
GCGCCGCCATGGCCATCGACACACTATTCCTTCGCTTAGGATACTGGAAA
ATCGTAAGGATGTCACGTTTGGAATTGTCGAGGGGACATGTCATTGTCAG
CTTGGATGGATTCCAAATTAGAGTTTGTGAAAGCCACAGCGGGCGGTCGT
ATATCAAGGACGCATGACAGCGAAGTCGTTTGTATGTAATCGTGCGTAGG
TTATCATGTCACGAAGCCTTCGATTTTCTCGTCACATTCGGCTCACGTCC
ATGTATAAAATTGCCTATCTCATGCAACAGGTTTTTGTCTTTCTTTGTCA
AACGGGGGCTCTATGCCGTGCGGCCGCCAGGCCCTGCCCTTCGCTCGTAG
ATAGGCAACCGTGACAGCAGTACATCCCAGTAGCATTCGCAAATCCTTCC
ATCGATCCACGCCTTTTTAATTAGCATCCATTTACTCGCTCGCGTCTAGC
TATGGGTGCGCTTGCGGGCTTTGTGAATGCTCCCGTCACGAAAGGTTACT
GCCTTCTGGTGGTAGGAGCCTCCCTCCTCTCGTCCTACACCCATTCTAGT
CACACTTTAAGATTGGACACGACCCGCATTCTCCGCAAAGGAGAGCTCTG
GCGTCTTTTCACCAGTCAAATCGCCTTTCAAGAACACCCTCAAACGGTGC
TGGGCGTATTCCTGCTCTATACTTTCCGGCACTTTGAACGGCAAATGGGC
TCTCGAAAATTTGGCTCGTTTCTTGTCCTCTCCACGCTCCTGGCAACGTC
AACAGAAATGGCGATTGCTGGCTGGTTAGGGGGCAAAGGGAGGATAGGAG
AGGGGTTGGCCTTGTCTCCCGGGCCCTTTGGGGTCGTCTACGCCTTGTTT
GTCCTCTTTTATACTACCGTACCCAAACTCCACCCGCGCCTGCTTCGTGT
CTGTGGGGCGGACTTGTCCGACAAGAGCATGTACTACGCGGTGGGGGCAC
AGCTTCTCCTTGGTGGGGGCTGGAAAACGGCCATTCCCGCCTTGTGTGGC
TTGTTTGCGGGCATCCTCTACCGGCGCAACGTCTTTGGGATGCAATCCGT
CCTTCTTCCCCAGGTCCTGTGCCGCGGCGTGGCTTCCGTCTTGGAGCCCC
TGCTCCAGGCAAGGCGCCCGACAATGCGGGGTCGAGGTGGTGCGGAAAGG
CGGCGACGGAGAGCGGGCATGGCGGGGAGGGAACAGCTCCTGCCGGGGGG
CGACCGGGCCCTAGGACGAGGGGGAGGGGGAGGACGGGAGGGAGGACAGC
TGGCACCCCCTCCGCCACCACCACCAGCGTCGGAGGATGCAATACAGATG
TTGATGGGGTTGGGCTTCGAGCGGGGGGCGGTTGTAAGAGCCTTGCAGGG
GGCGGATAACAATGTGGAAGTTGCGGCGAACAGGCTGCTGCAAGGGGCGT
GACGGGGGAGGAAAGCTTGTGGGGGGGAGGGCAAGGCGGTAGGAGAGGCT
GTAGAAAGCGTCAAGAGCGACGGCAGGTGGTAATAAACAAGGAAAGCTGT
AAATTATGCGGCGGC

Coding sequence (CDS) from alignment at CM002458.1:216980..218494-

>rna1815 ID=rna1815|Name=rna1815|organism=Nannochloropsis gaditana|type=CDS|length=951bp|location=Sequence derived from alignment at CM002458.1:216980..218494- (Nannochloropsis gaditana)
ATGGGTGCGCTTGCGGGCTTTGTGAATGCTCCCGTCACGAAAGGTTACTG
CCTTCTGGTGGTAGGAGCCTCCCTCCTCTCGTCCTACACCCATTCTAGTC
ACACTTTAAGATTGGACACGACCCGCATTCTCCGCAAAGGAGAGCTCTGG
CGTCTTTTCACCAGTCAAATCGCCTTTCAAGAACACCCTCAAACGGTGCT
GGGCGTATTCCTGCTCTATACTTTCCGGCACTTTGAACGGCAAATGGGCT
CTCGAAAATTTGGCTCGTTTCTTGTCCTCTCCACGCTCCTGGCAACGTCA
ACAGAAATGGCGATTGCTGGCTGGTTAGGGGGCAAAGGGAGGATAGGAGA
GGGGTTGGCCTTGTCTCCCGGGCCCTTTGGGGTCGTCTACGCCTTGTTTG
TCCTCTTTTATACTACCGTACCCAAACTCCACCCGCGCCTGCTTCGTGTC
TGTGGGGCGGACTTGTCCGACAAGAGCATGTACTACGCGGTGGGGGCACA
GCTTCTCCTTGGTGGGGGCTGGAAAACGGCCATTCCCGCCTTGTGTGGCT
TGTTTGCGGGCATCCTCTACCGGCGCAACGTCTTTGGGATGCAATCCGTC
CTTCTTCCCCAGGTCCTGTGCCGCGGCGTGGCTTCCGTCTTGGAGCCCCT
GCTCCAGGCAAGGCGCCCGACAATGCGGGGTCGAGGTGGTGCGGAAAGGC
GGCGACGGAGAGCGGGCATGGCGGGGAGGGAACAGCTCCTGCCGGGGGGC
GACCGGGCCCTAGGACGAGGGGGAGGGGGAGGACGGGAGGGAGGACAGCT
GGCACCCCCTCCGCCACCACCACCAGCGTCGGAGGATGCAATACAGATGT
TGATGGGGTTGGGCTTCGAGCGGGGGGCGGTTGTAAGAGCCTTGCAGGGG
GCGGATAACAATGTGGAAGTTGCGGCGAACAGGCTGCTGCAAGGGGCGTG
A

Synonyms

Publications