EWM28891.1, cds1782 (CDS) Nannochloropsis gaditana

Overview
NameEWM28891.1
Unique Namecds1782
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:119981..120237 -
Alignment locationCM002458.1:119517..119532 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28891.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100494g1.8972.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:119981..120237 -
CM002458.1supercontigCM002458.1:119517..119532 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM28891.1 vs. NCBI_GenBank
Match: gi|585111326|gb|EWM28891.1| (hypothetical protein Naga_100494g1 [Nannochloropsis gaditana])

HSP 1 Score: 173.326 bits (438), Expect = 1.172e-54
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 
Query:    1 MASPPRSSSPSSSSLWEAALPSSDSQLQRLSEIDAYVKSISLIDNEEDEDKQASTLSQSTPRARSESISASRTSADHDGIGGLLRRWKAR 90
            MASPPRSSSPSSSSLWEAALPSSDSQLQRLSEIDAYVKSISLIDNEEDEDKQASTLSQSTPRARSESISASRTSADHDGIGGLLRRWKAR
Sbjct:    1 MASPPRSSSPSSSSLWEAALPSSDSQLQRLSEIDAYVKSISLIDNEEDEDKQASTLSQSTPRARSESISASRTSADHDGIGGLLRRWKAR 90
The following BLAST results are available for this feature:
BLAST of EWM28891.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111326|gb|EWM28891.1|1.172e-54100.00hypothetical protein Naga_100494g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1786rna1786Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications