EWM28901.1, cds1774 (CDS) Nannochloropsis gaditana

Overview
NameEWM28901.1
Unique Namecds1774
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:103005..103226 +
Alignment locationCM002458.1:103369..103719 +
Alignment locationCM002458.1:104094..104193 +
Alignment locationCM002458.1:104456..104547 +
Alignment locationCM002458.1:104815..105333 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28901.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100822g1.2705.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:103005..103226 +
CM002458.1supercontigCM002458.1:103369..103719 +
CM002458.1supercontigCM002458.1:104094..104193 +
CM002458.1supercontigCM002458.1:104456..104547 +
CM002458.1supercontigCM002458.1:104815..105333 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|585111342|gb|EWM28901.1| (hypothetical protein Naga_100822g1 [Nannochloropsis gaditana])

HSP 1 Score: 856.284 bits (2211), Expect = 0.000e+0
Identity = 427/427 (100.00%), Postives = 427/427 (100.00%), Query Frame = 0
Query:    1 MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAASLLSLPTHQAFPASALPPESTPKKMRSMLLLPLCPPPQQALREEGNNNAKVRDEDAMIKREGTHSCEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPESDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPSFYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQGPPSLPRAPPLPPSSLPSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVGALCIISIPPPFLSPSLNVPRRWPPLSS 427
            MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAASLLSLPTHQAFPASALPPESTPKKMRSMLLLPLCPPPQQALREEGNNNAKVRDEDAMIKREGTHSCEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPESDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPSFYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQGPPSLPRAPPLPPSSLPSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVGALCIISIPPPFLSPSLNVPRRWPPLSS
Sbjct:    1 MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAASLLSLPTHQAFPASALPPESTPKKMRSMLLLPLCPPPQQALREEGNNNAKVRDEDAMIKREGTHSCEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPESDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPSFYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQGPPSLPRAPPLPPSSLPSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVGALCIISIPPPFLSPSLNVPRRWPPLSS 427          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|585111341|gb|EWM28900.1| (hypothetical protein Naga_100822g1 [Nannochloropsis gaditana])

HSP 1 Score: 817.379 bits (2110), Expect = 0.000e+0
Identity = 412/427 (96.49%), Postives = 412/427 (96.49%), Query Frame = 0
Query:    1 MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAASLLSLPTHQAFPASALPPESTPKKMRSMLLLPLCPPPQQALREEGNNNAKVRDEDAMIKREGTHSCEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPESDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPSFYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQGPPSLPRAPPLPPSSLPSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVGALCIISIPPPFLSPSLNVPRRWPPLSS 427
            MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAASLLSLPTHQAFPASALPPESTPKK               ALREEGNNNAKVRDEDAMIKREGTHSCEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPESDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPSFYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQGPPSLPRAPPLPPSSLPSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVGALCIISIPPPFLSPSLNVPRRWPPLSS
Sbjct:    1 MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAASLLSLPTHQAFPASALPPESTPKK---------------ALREEGNNNAKVRDEDAMIKREGTHSCEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPESDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVELDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPSFYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQGPPSLPRAPPLPPSSLPSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVGALCIISIPPPFLSPSLNVPRRWPPLSS 412          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|1210526797|dbj|GAX14445.1| (hypothetical protein FisN_11Hh096 [Fistulifera solaris])

HSP 1 Score: 123.25 bits (308), Expect = 1.292e-27
Identity = 61/115 (53.04%), Postives = 74/115 (64.35%), Query Frame = 0
Query:  151 SDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCM--PPQPLKMAEAMVELDRLEAIWRRRLE 263
            SD +A K L + R    G+ RRGKWT EEE YV RV + F+ G L   AGTTLR+YL++KL CDPMRITKKF+G   IGK +FHP +  P     + +A  EL  LE  W RRLE
Sbjct:  141 SDTDASKLLGSER---NGRLRRGKWTAEEEAYVARVIQDFNSGFLDAPAGTTLRTYLSEKLQCDPMRITKKFTGDACIGKRVFHPAVRSPNNVSTIDKAQAELLHLEKRWHRRLE 252          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|1072237911|gb|OEU22638.1| (putative chitinase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 118.242 bits (295), Expect = 2.402e-25
Identity = 57/99 (57.58%), Postives = 65/99 (65.66%), Query Frame = 0
Query:  167 GGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCM--PPQPLKMAEAMVELDRLEAIWRRRLE 263
            G   RRGKWT EEE YV RV + F+ G L   AG TLRSYL+DKL CDPMRITKKF+G   IGK +FHP +        + +A  ELD LE  WRRRLE
Sbjct:  188 GTTRRRGKWTVEEEEYVARVIQDFNSGFLNAPAGYTLRSYLSDKLQCDPMRITKKFTGESCIGKRVFHPAVRSAANSGSIDKAQAELDALETRWRRRLE 286          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|813152479|ref|XP_012201238.1| (hypothetical protein SPRG_20254 [Saprolegnia parasitica CBS 223.65] >gi|641534135|gb|KDO28094.1| hypothetical protein SPRG_20254 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 114.39 bits (285), Expect = 3.370e-25
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 0
Query:  170 WRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPL---KMAEAMVELDRLEAIWRRRLEEI 265
            +R+GKWT EE VY  R+T  F +GLLPL  GT LR YLADKLNC+PMRITKKF+G   IGK IF P +PP PL   +M     EL  LE  +  R+EE+
Sbjct:   57 FRKGKWTDEESVYAERMTHYFKEGLLPLEKGTMLRMYLADKLNCEPMRITKKFTGDECIGKQIFRP-LPPTPLVNARMQSVQTELKALETAFLHRIEEM 154          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|669154792|ref|XP_008612958.1| (hypothetical protein SDRG_08838 [Saprolegnia diclina VS20] >gi|669154794|ref|XP_008612959.1| hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530735493|gb|EQC33735.1| hypothetical protein SDRG_08838 [Saprolegnia diclina VS20] >gi|530735494|gb|EQC33736.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 114.39 bits (285), Expect = 5.242e-25
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 0
Query:  170 WRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPL---KMAEAMVELDRLEAIWRRRLEEI 265
            +R+GKWT EE VY  R+T  F +GLLPL  GT LR YLADKLNC+PMRITKKF+G   IGK IF P +PP PL   +M     EL  LE  +  R+EE+
Sbjct:   69 FRKGKWTDEESVYAERMTHYFKEGLLPLEKGTMLRMYLADKLNCEPMRITKKFTGDECIGKQIFRP-LPPTPLVNARMQSVQTELKALETAFLHRIEEM 166          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|1173929319|gb|OQR82570.1| (hypothetical protein ACHHYP_15855 [Achlya hypogyna])

HSP 1 Score: 112.464 bits (280), Expect = 1.407e-24
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 0
Query:  170 WRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPL---KMAEAMVELDRLEAIWRRRLEEI 265
            +R+GKWT EE VY  R+T  F +GLLPL  GT LR YLA+KLNC+PMRITKKF+G   IGK IF P +PP PL   +M     EL  LE  + +R+EE+
Sbjct:   66 FRKGKWTDEESVYAERMTHYFKEGLLPLEKGTMLRMYLAEKLNCEPMRITKKFTGDECIGKQIFRP-LPPTPLVTARMQSVQTELKALETAFLQRIEEM 163          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|219111487|ref|XP_002177495.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412030|gb|EEC51958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 114.39 bits (285), Expect = 4.957e-24
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 0
Query:  171 RRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCM--PPQPLKMAEAMVELDRLEAIWRRRLE 263
            RRGKWT EEE YV RV + F+ G L   AGTTLR++L++KL CDPMRITKKF+G   IGK +FHP +  P     + +A  EL  LE  W+RRLE
Sbjct:  227 RRGKWTVEEEAYVARVIQDFNSGFLDAPAGTTLRTFLSEKLQCDPMRITKKFTGDACIGKRVFHPAVRSPSNGTAIDKAQAELHGLERRWQRRLE 321          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|1173956668|gb|OQS03402.1| (hypothetical protein THRCLA_04298 [Thraustotheca clavata])

HSP 1 Score: 110.153 bits (274), Expect = 7.815e-24
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 0
Query:  170 WRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPL---KMAEAMVELDRLEAIWRRRLEEI 265
            +R+GKWT EE VY  R++  F +GLLPL  GT LR YLA+KLNC+PMRITKKF+G   IGK IF P MPP PL   +M     EL  LE  +  R+EE+
Sbjct:   48 FRKGKWTEEESVYAERMSYYFKEGLLPLEKGTMLRMYLAEKLNCEPMRITKKFTGDECIGKQIFRP-MPPTPLVSVRMQSVQAELKALETAFLNRIEEM 145          
BLAST of EWM28901.1 vs. NCBI_GenBank
Match: gi|953486150|emb|CEG50328.1| (hypothetical protein PHALS_08047 [Plasmopara halstedii])

HSP 1 Score: 110.153 bits (274), Expect = 4.435e-23
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 0
Query:  170 WRRGKWTPEEEVYVNRVTEAFHQGLLPLAAGTTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPC--MPPQPLKMAEAMVELDRLEAIWRRRLEEIR 266
             R+GKWT EE  Y  ++T+ F +GLLP+  GT LR YL+ KLNC+PMRITKKF+G   IGK +F PC   P   L++ +A VEL  LEA + +RL+E R
Sbjct:  130 LRKGKWTEEESRYAAQLTKYFKKGLLPIERGTMLRLYLSQKLNCEPMRITKKFTGGECIGKQVFRPCSLTPESRLRIMQAQVELVALEAAFLKRLKENR 228          
The following BLAST results are available for this feature:
BLAST of EWM28901.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111342|gb|EWM28901.1|0.000e+0100.00hypothetical protein Naga_100822g1 [Nannochloropsi... [more]
gi|585111341|gb|EWM28900.1|0.000e+096.49hypothetical protein Naga_100822g1 [Nannochloropsi... [more]
gi|1210526797|dbj|GAX14445.1|1.292e-2753.04hypothetical protein FisN_11Hh096 [Fistulifera sol... [more]
gi|1072237911|gb|OEU22638.1|2.402e-2557.58putative chitinase [Fragilariopsis cylindrus CCMP1... [more]
gi|813152479|ref|XP_012201238.1|3.370e-2556.57hypothetical protein SPRG_20254 [Saprolegnia paras... [more]
gi|669154792|ref|XP_008612958.1|5.242e-2556.57hypothetical protein SDRG_08838 [Saprolegnia dicli... [more]
gi|1173929319|gb|OQR82570.1|1.407e-2455.56hypothetical protein ACHHYP_15855 [Achlya hypogyna... [more]
gi|219111487|ref|XP_002177495.1|4.957e-2455.79predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1173956668|gb|OQS03402.1|7.815e-2455.56hypothetical protein THRCLA_04298 [Thraustotheca c... [more]
gi|953486150|emb|CEG50328.1|4.435e-2352.53hypothetical protein PHALS_08047 [Plasmopara halst... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1778rna1778Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications