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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100822g1.2705.mrna |
Orig protein id | gnl|cribi|Naga_100822g1.2705 |
Gbkey | mRNA |
Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002458.1 | supercontig | CM002458.1:102807..105386 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1778 ID=rna1778|Name=rna1778|organism=Nannochloropsis gaditana|type=mRNA|length=1591bp CGGCTTGTGCTTCTTTTGTGCACCTCGTATTTTGGGAGGACACGAGAAGA TTTGAAGGCAGGGTTATCCGTCATATCCTATATTTAAGCGTGCCCTCCCT CCCCTCCATCCTCCACCTCCCCATCCTCACGGTCTCTCTCCTTCCCCCCT CCCTCCTTTCCTCCCTCCCTTCCTCCGTCCCCCCCTTTCCGTCCCTGGTA GATGGACTACGACTTCACGGACTCCCACTGTCTCCGGCAGCAGCTCCTCT TCACCTCTTCCCCTCTGTCTGCCGACCTGGAGGTCACCGGCTTTCCGCTT GCTACCCTCCTCGTCTCCTCCTCCCAGCCCGACGCCGCCCTCTTCCTCTT CCTGCTTTGTGTGGATACGCAAGGAAAGGCCCATTACATCACGGAAGCCT GCTTGCGCGTCAGCAGCCGTGCCACCCTCCCTCCCTCCACCCCTCCCTCC CCCTCGTCCTCCCTCGGGACCTCGGTGTTGTGCTACCCGGGCCTGCCCCG CCACTCCTTCCGTCGCGCGGACGTGAAATTCCTGACGCCCGGGGTCCCTG TCCGAGTCGAGATAGTCTTTCAACCCAGCAGTTACCGCATTCTTCGAGGA CAGTCGATCCGCCTGGCCGTGGCTGGCAGCAACCCTCGCGATTTCTTGCC GATCCCACTCGGAGAAGGGGTGGATTTCTACGATTTGACCCTCCATGTGG ATGCAGGCAAGGATGAGAGGGCAGGAATTGAAAGGAGAATGGAAGGATCG AATGCGGGACTGGGTGGTTGCCGCCTTGTGTTACCTGTGGTGTAAAGAGA GCGAAGACAAAACCAGGGGGGTTGGAAACGGGGCAGACTGGTCTCAAGTA CCAGGGTCAAGAGGAAGTGCGCGGAGTGAAGATGACATAGCCATATTGAC TGACCACGAAGAGAGAAGGACAAAGGCAAGGAACCTCATGTAAATGCAGG ACGGATTAATTTGGGTCTCTTTTGTGGCTGTCCTTGGTAATGTTCTTAAA CTCTGTGCGGTGCTTTCCACCCATTGCTAGATGGAGTTATCCTACCATCT TACATGCTGCATTCATTCGCACAGGCTATGCTCGTACATGGTTGTTTTTC CGCCGGGGAAGGCTCCTTATCTTCTAGATTTCTCCTTCATTAACGATAGA CTGTGGCTCTTTTTTTTCTTCAAGATTATATCTCATGTTCTGCAATTGTT AGATGCACTACATTATATGTAGTGTTTTCAACTCTCTACCAGGCTATTTA CAGCAAGGAAAGAAACGGCATAGGCAGCGATTTCACGCCTTCCAACACAG AGAAAGACACCTTTTAACAAAGCGGAAAATATACCTAGGCTAGAGGCTCA CTCACAAAAACGAGAATCTACTTCAAAATGTAATCTTTCGTCGTTTTTAT CCTGTTCATGGTTTCAGACGCATTAAACCGAGATTTTGGATGGAGTCTCC TTTAGGGTTTCGCGCCCCCCACGGGGCCGCCAGTCGGAGAAAAATCGGGA AAAAAAGTTACTTTCCAGACACATGCCTTCAGACCACTCCAATAATCTGG CCACACTGCTAAACGTTGCGAGGGTCCTGCATGACAATGCG back to topprotein sequence of rna1778 >rna1778-protein ID=rna1778-protein|Name=rna1778|organism=Nannochloropsis gaditana|type=polypeptide|length=427bp MASPASLIPNQASGSSRNDAVRGDWVNACSHIKAECDHDEIRGRHGGHAA SLLSLPTHQAFPASALPPESTPKKMRSMLLLPLCPPPQQALREEGNNNAK VRDEDAMIKREGTHSCEGSSGAGSGGNEIGDGTSSSAVGLSSEAEGRGPE SDVEALKALAASRVATGGKWRRGKWTPEEEVYVNRVTEAFHQGLLPLAAG TTLRSYLADKLNCDPMRITKKFSGVGSIGKCIFHPCMPPQPLKMAEAMVE LDRLEAIWRRRLEEIRAVEYEFQQSASLSSQGSATSPSFPPSLGPSLPPS FYQQHYPPQQYPQHHPPYPYHPQHHPHGPHPPATGVPPSSYPDSCGAWQG PPSLPRAPPLPPSSLPSEPTSSSVLSLPPGLPSGAPAPGSRPSQRVVAVG ALCIISIPPPFLSPSLNVPRRWPPLSS back to topmRNA from alignment at CM002458.1:102807..105386+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1778 ID=rna1778|Name=rna1778|organism=Nannochloropsis gaditana|type=mRNA|length=2580bp|location=Sequence derived from alignment at CM002458.1:102807..105386+ (Nannochloropsis gaditana) cgtctttttcttccaacCTCATGAAGGCCCTGACCCTTCGACTCGCAATA
ACCGCCCTCGTCACAGGTGAAGCACGCTGCGTGCTTTATAACCCCTTCCG
CTGGCATCAGCCCGGCTTTTCGTCCGTGCAAACGGACACTACCACTCCTA
TTCAGCAGTGGTCCTGTCAGTGCAGCCTGGTGCTCTTTCTTACAGGGCAT
GGCTTCGCCAGCCTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCGTA
ATGACGCCGTCAGAGGCGACTGGGTGAACGCATGCAGTCATATTAAAGCA
GAATGCGATCATGATGAAATaagaggaagacacggaGGCCACGCAGCTTC
CTTGCTGTCTCTCCCCACGCACCAGGCCTTTCCAGCCTCAGCATTGCCTC
CTGAATCGACACCCAAGAAGGTGCGTCGCTGGGCTGAATATATACAcaca
tacatatatatacatatatacatatatatatatagctTCAGTCGGACATG
CTAGCAATGACCTTTTGTTTTCCTTATCCTGCTGAGCGGGTAACGGGGCC
GAATCGTGGCAGATGCGATcgatgctcctccttcctctttgtccgcCCCC
GCAACAGGCACtacgagaggaaggaaataaCAACGCCAAAGtcagggacg
aggacgccatGATAAAAAGAGAGGGCACGCATTCCTGCGAAGGGAGCTCA
GGCGCGGGTAGTGGGGGAAACGAAATTGGGGACGGAACAAGCAGCAGTGC
GGTGGGTCTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAGAGCGACGTGG
AGGCGTTGAAAGCGCTGGCGGCGTCGCGCGtagcgacgggagggaaatgg
cggCGCGGAAAGTGGActccggaggaggaagtgtacGTGAACCGCGTCAC
CGAGGCCTTCCATGtgcgtgcaggagggagggcggggggggaggagggag
gggaagaatagggcggggggcgactGCCGAGTGGTAGCGTTTGGGCgtgg
gcaggggggagggagggagggaggaagggtggggagaaaggaaagaaggg
agggaaaaggaagggatggctTGGCGAAAGTCTGGGAAAGGcggaaggcg
aggggaaaaTAGTGTGAGAGGCAATACATTGAGATAAACATATGTAATAG
TGTGAGAGGCACTATATCTATGTATATCCAAATGTTTCTCCCCCTGCATT
GTAACCCTCCTTCGCACTCacgctctctttctcccaccACATTGCCCGGc
tcgtctcccccttccctttcctgccgtCATTTCCCAGCAAGGATTGCTCC
CCCTAGCGGCAGGGACCACACTGCGCTCATACTTGGCAGACAAATTGAAC
TGCGACCCCATGCGTATCACCAAGAAGTTCTCGGGCGGTGCGTGACATTT
GGTTGCATGgcgtctctcctttctcctgtcTTCTTGCGTCCTTTTCGATG
CCGCGGATGATGGTGGAGACGAGCGGCGGcactcctcttcttcccctccc
tctttccctccctctctccccgccttgcccttgtcgcctctcctccccct
tcttcacccTCCTGTGACAAACAGGTATCCACAAGGCGATAGCCAAgctc
acccccccccctccggcctctccttccctccctccatctctgtCTGCAGT
GGGCTCGATCGGCAAATGCATCTTCCATCCCTGCATGCCACCGCAACCAC
TGAAAATGGCGGAAGCGATGGTGGAGCTCGATCGGCTGGAGgtcggaagg
gagggcgggagggaggggagggcgggagagggggaagctgCGTGCTATTC
CTTTTGCTATTTGCCATTGGAGGGAGTGAAGCTGCGTGGGGTAGCACGCA
GACTCCTTCAGTCATTcacatggacgaggaggggcccTGCTGGGGTGATA
GCGAAACAACGGCGATGTAAACGGCATTTGTTCtgacttccctccctccc
tccctccctccctccctccttccgcccttccGTCCTTGTCCCTGCGATTT
CCCCTCAGGCAATCTGGAGACGTCGCCTCGAAGAGATCCGAGCTGTCGAG
TATGAATTCCAACAgagcgcctccctctcctcgcagGGATCcgccacctc
gccctccttcccgccctccctcggcccctccttgcccccttCATTCTACC
AGCAGCACTACCCTCCTCAACAGTACCCTCAGCACCATCCTCCGTACCCT
TACCACCCGCAACACCACCCACACGGGCCTCATCCACCTGCAACcggcgt
ccctccctcctcttaccCGGATTCGTGTGGAGCCTGGCaaggtcctccct
ccctccctcgcgccccgcccctcccgccctcctccctcccttcggaGCCG
ACCTCGTCTTCCGtcttgtcccttcctcccgggcTACCCTCTGGTGCCCC
CGCTCCTGGCAGCAGGCCATCGCAACGTGTCGTGGCGGTAGGTGCCCTAT
GCATCATTTCTatccctcccccattcctctctccctctttgaATgtgccg
aggaggtggccccctctttcctcctagTAACGTCGGGCTCGTTGTCGTAC
CTCCCCACGCAAAACTGACCTTTCTCTCCC back to topCoding sequence (CDS) from alignment at CM002458.1:102807..105386+ >rna1778 ID=rna1778|Name=rna1778|organism=Nannochloropsis gaditana|type=CDS|length=6420bp|location=Sequence derived from alignment at CM002458.1:102807..105386+ (Nannochloropsis gaditana) ATGGCTTCGCCAGCCTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCG TAATGACGCCGTCAGAGGCGACTGGGTGAACGCATGCAGTCATATTAAAG CAGAATGCGATCATGATGAAATaagaggaagacacggaGGCCACGCAGCT TCCTTGCTGTCTCTCCCCACGCACCAGGCCTTTCCAGCCTCAGCATTGCC TCCTGAATCGACACCCAAGAAGATGCGATcgatgctcctccttcctcttt gtccgcCCCCGCAACAGGCACtacgagaggaaggaaataaCAACGCCAAA GtcagggacgaggacgccatGATAAAAAGAGAGGGCACGCATTCCTGCGA AGGGAGCTCAGGCGCGGGTAGTGGGGGAAACGAAATTGGGGACGGAACAA GCAGCAGTGCGGTGGGTCTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAG AGCGACGTGGAGGCGTTGAAAGCGCTGGCGGCGTCGCGCGtagcgacggg agggaaatggcggCGCGGAAAGTGGActccggaggaggaagtgtacGTGA ACCGCGTCACCGAGGCCTTCCATCAAGGATTGCTCCCCCTAGCGGCAGGG ACCACACTGCGCTCATACTTGGCAGACAAATTGAACTGCGACCCCATGCG TATCACCAAGAAGTTCTCGGGCGTGGGCTCGATCGGCAAATGCATCTTCC ATCCCTGCATGCCACCGCAACCACTGAAAATGGCGGAAGCGATGGTGGAG CTCGATCGGCTGGAGGCAATCTGGAGACGTCGCCTCGAAGAGATCCGAGC TGTCGAGTATGAATTCCAACAgagcgcctccctctcctcgcagGGATCcg ccacctcgccctccttcccgccctccctcggcccctccttgcccccttCA TTCTACCAGCAGCACTACCCTCCTCAACAGTACCCTCAGCACCATCCTCC GTACCCTTACCACCCGCAACACCACCCACACGGGCCTCATCCACCTGCAA CcggcgtccctccctcctcttaccCGGATTCGTGTGGAGCCTGGCaaggt cctccctccctccctcgcgccccgcccctcccgccctcctccctcccttc ggaGCCGACCTCGTCTTCCGtcttgtcccttcctcccgggcTACCCTCTG GTGCCCCCGCTCCTGGCAGCAGGCCATCGCAACGTGTCGTGGCGGTAGGT GCCCTATGCATCATTTCTatccctcccccattcctctctccctctttgaA TgtgccgaggaggtggccccctctttcctcctagATGGCTTCGCCAGCCT CGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCGTAATGACGCCGTCAGA GGCGACTGGGTGAACGCATGCAGTCATATTAAAGCAGAATGCGATCATGA TGAAATaagaggaagacacggaGGCCACGCAGCTTCCTTGCTGTCTCTCC CCACGCACCAGGCCTTTCCAGCCTCAGCATTGCCTCCTGAATCGACACCC AAGAAGATGCGATcgatgctcctccttcctctttgtccgcCCCCGCAACA GGCACtacgagaggaaggaaataaCAACGCCAAAGtcagggacgaggacg ccatGATAAAAAGAGAGGGCACGCATTCCTGCGAAGGGAGCTCAGGCGCG GGTAGTGGGGGAAACGAAATTGGGGACGGAACAAGCAGCAGTGCGGTGGG TCTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAGAGCGACGTGGAGGCGT TGAAAGCGCTGGCGGCGTCGCGCGtagcgacgggagggaaatggcggCGC GGAAAGTGGActccggaggaggaagtgtacGTGAACCGCGTCACCGAGGC CTTCCATCAAGGATTGCTCCCCCTAGCGGCAGGGACCACACTGCGCTCAT ACTTGGCAGACAAATTGAACTGCGACCCCATGCGTATCACCAAGAAGTTC TCGGGCGTGGGCTCGATCGGCAAATGCATCTTCCATCCCTGCATGCCACC GCAACCACTGAAAATGGCGGAAGCGATGGTGGAGCTCGATCGGCTGGAGG CAATCTGGAGACGTCGCCTCGAAGAGATCCGAGCTGTCGAGTATGAATTC CAACAgagcgcctccctctcctcgcagGGATCcgccacctcgccctcctt cccgccctccctcggcccctccttgcccccttCATTCTACCAGCAGCACT ACCCTCCTCAACAGTACCCTCAGCACCATCCTCCGTACCCTTACCACCCG CAACACCACCCACACGGGCCTCATCCACCTGCAACcggcgtccctccctc ctcttaccCGGATTCGTGTGGAGCCTGGCaaggtcctccctccctccctc gcgccccgcccctcccgccctcctccctcccttcggaGCCGACCTCGTCT TCCGtcttgtcccttcctcccgggcTACCCTCTGGTGCCCCCGCTCCTGG CAGCAGGCCATCGCAACGTGTCGTGGCGGTAGGTGCCCTATGCATCATTT CTatccctcccccattcctctctccctctttgaATgtgccgaggaggtgg ccccctctttcctcctagATGGCTTCGCCAGCCTCGTTAATCCCGAACCA AGCAAGTGGCAGCTCGCGTAATGACGCCGTCAGAGGCGACTGGGTGAACG CATGCAGTCATATTAAAGCAGAATGCGATCATGATGAAATaagaggaaga cacggaGGCCACGCAGCTTCCTTGCTGTCTCTCCCCACGCACCAGGCCTT TCCAGCCTCAGCATTGCCTCCTGAATCGACACCCAAGAAGATGCGATcga tgctcctccttcctctttgtccgcCCCCGCAACAGGCACtacgagaggaa ggaaataaCAACGCCAAAGtcagggacgaggacgccatGATAAAAAGAGA GGGCACGCATTCCTGCGAAGGGAGCTCAGGCGCGGGTAGTGGGGGAAACG AAATTGGGGACGGAACAAGCAGCAGTGCGGTGGGTCTATCCTCGGAGGCA GAGGGTCGTGGTCCTGAGAGCGACGTGGAGGCGTTGAAAGCGCTGGCGGC GTCGCGCGtagcgacgggagggaaatggcggCGCGGAAAGTGGActccgg aggaggaagtgtacGTGAACCGCGTCACCGAGGCCTTCCATCAAGGATTG CTCCCCCTAGCGGCAGGGACCACACTGCGCTCATACTTGGCAGACAAATT GAACTGCGACCCCATGCGTATCACCAAGAAGTTCTCGGGCGTGGGCTCGA TCGGCAAATGCATCTTCCATCCCTGCATGCCACCGCAACCACTGAAAATG GCGGAAGCGATGGTGGAGCTCGATCGGCTGGAGGCAATCTGGAGACGTCG CCTCGAAGAGATCCGAGCTGTCGAGTATGAATTCCAACAgagcgcctccc tctcctcgcagGGATCcgccacctcgccctccttcccgccctccctcggc ccctccttgcccccttCATTCTACCAGCAGCACTACCCTCCTCAACAGTA CCCTCAGCACCATCCTCCGTACCCTTACCACCCGCAACACCACCCACACG GGCCTCATCCACCTGCAACcggcgtccctccctcctcttaccCGGATTCG TGTGGAGCCTGGCaaggtcctccctccctccctcgcgccccgcccctccc gccctcctccctcccttcggaGCCGACCTCGTCTTCCGtcttgtcccttc ctcccgggcTACCCTCTGGTGCCCCCGCTCCTGGCAGCAGGCCATCGCAA CGTGTCGTGGCGGTAGGTGCCCTATGCATCATTTCTatccctcccccatt cctctctccctctttgaATgtgccgaggaggtggccccctctttcctcct agATGGCTTCGCCAGCCTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCG CGTAATGACGCCGTCAGAGGCGACTGGGTGAACGCATGCAGTCATATTAA AGCAGAATGCGATCATGATGAAATaagaggaagacacggaGGCCACGCAG CTTCCTTGCTGTCTCTCCCCACGCACCAGGCCTTTCCAGCCTCAGCATTG CCTCCTGAATCGACACCCAAGAAGATGCGATcgatgctcctccttcctct ttgtccgcCCCCGCAACAGGCACtacgagaggaaggaaataaCAACGCCA AAGtcagggacgaggacgccatGATAAAAAGAGAGGGCACGCATTCCTGC GAAGGGAGCTCAGGCGCGGGTAGTGGGGGAAACGAAATTGGGGACGGAAC AAGCAGCAGTGCGGTGGGTCTATCCTCGGAGGCAGAGGGTCGTGGTCCTG AGAGCGACGTGGAGGCGTTGAAAGCGCTGGCGGCGTCGCGCGtagcgacg ggagggaaatggcggCGCGGAAAGTGGActccggaggaggaagtgtacGT GAACCGCGTCACCGAGGCCTTCCATCAAGGATTGCTCCCCCTAGCGGCAG GGACCACACTGCGCTCATACTTGGCAGACAAATTGAACTGCGACCCCATG CGTATCACCAAGAAGTTCTCGGGCGTGGGCTCGATCGGCAAATGCATCTT CCATCCCTGCATGCCACCGCAACCACTGAAAATGGCGGAAGCGATGGTGG AGCTCGATCGGCTGGAGGCAATCTGGAGACGTCGCCTCGAAGAGATCCGA GCTGTCGAGTATGAATTCCAACAgagcgcctccctctcctcgcagGGATC cgccacctcgccctccttcccgccctccctcggcccctccttgccccctt CATTCTACCAGCAGCACTACCCTCCTCAACAGTACCCTCAGCACCATCCT CCGTACCCTTACCACCCGCAACACCACCCACACGGGCCTCATCCACCTGC AACcggcgtccctccctcctcttaccCGGATTCGTGTGGAGCCTGGCaag gtcctccctccctccctcgcgccccgcccctcccgccctcctccctccct tcggaGCCGACCTCGTCTTCCGtcttgtcccttcctcccgggcTACCCTC TGGTGCCCCCGCTCCTGGCAGCAGGCCATCGCAACGTGTCGTGGCGGTAG GTGCCCTATGCATCATTTCTatccctcccccattcctctctccctctttg aATgtgccgaggaggtggccccctctttcctcctagATGGCTTCGCCAGC CTCGTTAATCCCGAACCAAGCAAGTGGCAGCTCGCGTAATGACGCCGTCA GAGGCGACTGGGTGAACGCATGCAGTCATATTAAAGCAGAATGCGATCAT GATGAAATaagaggaagacacggaGGCCACGCAGCTTCCTTGCTGTCTCT CCCCACGCACCAGGCCTTTCCAGCCTCAGCATTGCCTCCTGAATCGACAC CCAAGAAGATGCGATcgatgctcctccttcctctttgtccgcCCCCGCAA CAGGCACtacgagaggaaggaaataaCAACGCCAAAGtcagggacgagga cgccatGATAAAAAGAGAGGGCACGCATTCCTGCGAAGGGAGCTCAGGCG CGGGTAGTGGGGGAAACGAAATTGGGGACGGAACAAGCAGCAGTGCGGTG GGTCTATCCTCGGAGGCAGAGGGTCGTGGTCCTGAGAGCGACGTGGAGGC GTTGAAAGCGCTGGCGGCGTCGCGCGtagcgacgggagggaaatggcggC GCGGAAAGTGGActccggaggaggaagtgtacGTGAACCGCGTCACCGAG GCCTTCCATCAAGGATTGCTCCCCCTAGCGGCAGGGACCACACTGCGCTC ATACTTGGCAGACAAATTGAACTGCGACCCCATGCGTATCACCAAGAAGT TCTCGGGCGTGGGCTCGATCGGCAAATGCATCTTCCATCCCTGCATGCCA CCGCAACCACTGAAAATGGCGGAAGCGATGGTGGAGCTCGATCGGCTGGA GGCAATCTGGAGACGTCGCCTCGAAGAGATCCGAGCTGTCGAGTATGAAT TCCAACAgagcgcctccctctcctcgcagGGATCcgccacctcgccctcc ttcccgccctccctcggcccctccttgcccccttCATTCTACCAGCAGCA CTACCCTCCTCAACAGTACCCTCAGCACCATCCTCCGTACCCTTACCACC CGCAACACCACCCACACGGGCCTCATCCACCTGCAACcggcgtccctccc tcctcttaccCGGATTCGTGTGGAGCCTGGCaaggtcctccctccctccc tcgcgccccgcccctcccgccctcctccctcccttcggaGCCGACCTCGT CTTCCGtcttgtcccttcctcccgggcTACCCTCTGGTGCCCCCGCTCCT GGCAGCAGGCCATCGCAACGTGTCGTGGCGGTAGGTGCCCTATGCATCAT TTCTatccctcccccattcctctctccctctttgaATgtgccgaggaggt ggccccctctttcctcctag back to top
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