rna1746, rna1746 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1746
Unique Name	rna1746
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1735
Alignment location	CM002458.1:18975..21223 -

Link to JBrowse

Properties


Property Name	Value
Product	thioredoxin-dependent peroxide reductase
Orig transcript id	gnl\|cribi\|Naga_100142g10.2509.mrna
Orig protein id	gnl\|cribi\|Naga_100142g10.2509
Gene	PRX2
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:18975..21223 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PRX2	gene1679	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1746	rna1746-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28928.1	cds1742	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:18975..21223-
coding sequence from alignment at CM002458.1:18975..21223-

mRNA sequence

>rna1746 ID=rna1746|Name=rna1746|organism=Nannochloropsis gaditana|type=mRNA|length=1735bp
TTGCCGTCGCGATGTGAGCTCGTTAGCTTTTTTGGTTTCTAGGCGGGGCT
GGGAAAATATGACAGTGTTTCTATTTCCCGCCTTTTGCGATCCTCCAAGT
CCTTTTGTTCTACACATTGTATCTCAAGGTGTAACAATTCTGTCACGTGT
TGACCACGTGATTTCCGCTGAGTCGGATCCATGACAACTCGGGCCTGGGA
TGAAACACAAAGCTTGTGTACATGTGAATGGTGCCTTCAAGTTTTCCTCG
ATTGACGGCAAAGGCACTTTTGCCGCCATATCTCCTAGACTGCCCACTTT
GAAGTAAAGCGTACCACTGCCAGAAAATCCACACGTTCTAGGAAACGCAT
CAGAGACACGGCTGTCAAATTTGTACACAGGCATTGACCTGCAGCTCCCG
AGGCTATGGCCCGCTCCAATCGTCGCAGCGGCCGAACAAGCCGCAACAGC
CATAGGAATATTCTGGGCAATACTAATCGTACGAAAAGCGCCCCGCGTAA
GAGTACCTTTCTGTTCGGAGCCATGGTCTTGGTTTCGATAGCAATCGTCG
TCCTGGTAGGTGCATGGACGCGATATGTTTCCCCCCCCCCAGAAATATCA
TGCAGTTACTTTGATCGCACGCCATGAGATGTATCAGTACGTTTGGCATT
GCCTGAATATGATTCTCTTTCGATCCTCATACCATACTATACGCCTGAAC
GCTCCACCTTAGACACACGCGAGCGAGCTAAATCTCGGAGGAGAGCGTCA
GACGCTGGGCTCGCCCGCTCAGCCTCCCGACGCCACCACGGACGTGCCTG
CTGAGTTTCCCATCGTCCTCGACGAAACAAAGCTAGGCGCGGAGTTGCTT
CACATACCAGTCGACAAGACTCACGGTGGTAGCACTCCGTCAGCTGTGTT
ATTTCGCCTTAAAGAGCACGTCTCTACCCTGATAAAGCGGCTGTTGCGGT
CCTCTGACACCGCCTGTAAGTGGAGCTGGCGGTGCTTGGCATGCAAACCC
AAGGAAACTTGCAAATTGAAGCCTCAATGGGGCGATTTGCATCTGGGGCA
GGCTTGTCGGGCTCGGGAGAGCGAGGAGGAGTGGAGTGCGAGGTCAAGCA
GGTTTGAAGATTGGATGAGGGTGGGATCAGGGAGGATCAAGCGGGTGTCG
AGTAGAGCTTGCCAAGGCGTCGATCGCGTCAGGGACAGGGTGGTGCATCA
CGCGGCGCGCGGCCTGGCTTCAATTCTGCGCCGGGTGCGGTCCCGATTGC
CATCGACGGACGCAGAATGCAAGTTTGACGTGGTGACAAGCGTAGGAGAG
CGGACCACGGTTTGTGTGCCCAGGGAGACGTGTGCATTCCAGTACCGCTT
CGGGGATGTGATGCTGGATCGATGCTGTCGCTTGAAGGCGCCTGGAGAGG
CGCTGACGGACCCTGTGCCGTGAGAGACTTGAGGCCGACAAGGATGCGGT
CTTGCCTCGATCGACAAGGGTTAATATATCAACGTGTACATACAAATATG
GGGTCAGAGGGAAAAAGGAGGATGTTGTGGATGTGAAGTATGCATGTATG
TAAGGAGACGGGGAAAGAGAGGCATGTGAATGAGTATGATGGTGGCCTCG
TTCGAGCGGAAAGAGACAATTTAACAGGAAAGACAGAAAGCCATCTGCCT
AATCATTTTGGGTGAATACCAAGAAATGGCTGTCTTAAAACAGAGTGGCA
GCCGGGCCCAGACTCTTGAAGTAATCCTTTCTTTC

protein sequence of rna1746

>rna1746-protein ID=rna1746-protein|Name=rna1746|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MIMRNIARVGINVLVRPPVVDGELTKISLADYKGKYVALLFYPKDFTFVC
PTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQI
PLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRN
VDETIRLIQAFQFVAKHGEVRGDGSLKEQKGGSRKRGEDGGRRDREWGGA
RGALEGGSLPTVETGIAAQGASPRGRPWHEAVVVRRASGIF

mRNA from alignment at CM002458.1:18975..21223-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1746 ID=rna1746|Name=rna1746|organism=Nannochloropsis gaditana|type=mRNA|length=2249bp|location=Sequence derived from alignment at CM002458.1:18975..21223- (Nannochloropsis gaditana)
ACGCGCTAGTCGAACACATGCTACAGAGCCCCCCAAAAGGTACCACACAA
CACAATGATCATGCGCAATATTGCCCGCGTTGGCATCAACGTCCTGGTGC
GCCCTCGTCACGGCGTTTTGGCCGCCTTGCCTCCCAAGTCGAGTTCCCTC
ACTCCTCTTTCCAGGGCAGCTCGTGCCATGGGAACAGTGACTTACTCCCC
CCCCGCCGTAAAAATCGGTCAGGCGGCACCGGACTTTACAGCGGTAGGTA
AGGGGTGATGATCAACTTAACGCATTGGGTTCATGGATGAGATTTCTGAA
GAATAACACTTTCTTGATCGGCGCTTTTGTAGGGAGCCGTGGTAGACGGG
GAATTGACGAAGATCTCCCTTGCCGACTACAAGGGCAAATACGTAGCTTT
GCTTTTCTATCCTAAGGATTTTACATTCGTCTGCCCGTAAGTACGACCAG
AGTGGAAGCTCGGCGTGGCATGTCAGAGGCACTTCTTGATCTCCCACACC
CCCCCTTCTGACACGAGACGTTCCCTCAATGCTCCCCCCCCCATCTGTTC
TCCATCGCCTTTTCAGGACGGAGATCATCGCGTACTCAGATGCTGCCCAT
CGCTTTGAAGAAATCGGCGCCAAGGTGATCGGCATCTCTACCGACACGGA
AGAATCGCACCTGGCGTGGGTGCGCACGCCCCGCAAGAGAGGAGGCTTGG
GTCACATGCAGATCCCCCTGGTCGCCGACGTGACCAAGACCATCGCCGCG
GACTACGGCGTGCTCCTGGAGGACATTGGGATAGCCTTGCGGGGCCTCTT
CCTCATCGATCCGGAGGGGGTGCTGCAGCAGATTACGGTGAACAACCTCC
CTGTCGGCCGTAATGTGGACGAGACCATTCGACTCATCCAAGCCTTCCAA
TTCGTGGCCAAACACGGCGAGGTGCGTGGGGATGGGAGCCTGAAGGAGCA
GAAAGGGGGGTCGAGGAAAAGGGGAGAGGATGGGGGACGAAGGGATAGGG
AATGGGGAGGGGCCAGAGGCGCCCTGGAGGGGGGGTCCCTGCCGACCGTG
GAGACTGGGATCGCCGCACAAGGGGCGTCTCCTAGGGGGAGACCGTGGCA
TGAAGCTGTCGTCGTCCGCAGGGCGAGCGGCATATTTTAATTGCGCGCAC
TTTGGCCCTCCGTATCCACCTGTCTGTCGTGTCCCCGGTCCCCCCTCATT
CTCCATCTCTTCGTTGATACTCCCAGGTCTGCCCCGCCGGGTGGACGCCC
GGTGACAAGACCATGAAGGCCGACCCTGAGGGCTCGTTGGAATACTTTGC
CTCGGGCGCCACGGAAGAGAGCGAGCAGGACCCCTTGGCGGGCGGCCCGC
ACATTGTCACGGCCAAGGACGGGAAGCACCTGAAGGAGCTCCTGGGGAAG
AAAGGAAAGGTGGTCTTGGACTTCGTGGCAGGCTGGTGTGGCAAATGCAA
GCAGATCATGCCTTTTGTCAACGATTTGAGCGAGGCACATGCGGGCGAGG
TGACCTTTGTGAAGATAGACACGACCGAAGACGCCTTGGCGGAGGCCGTG
GCTGAGCACGGCGTCTCGGTGCTGCCAGCCTTCCATTTTATCAAGGACGG
GAAAATCTATCGCCCTCCTGTGGTGGGGTACAAGAAAACGCCTCTGAAAG
AGGGAGTCACCGCCTTGGCGAAAAGCTGAATGCACAGAAACGGAGGATGA
AGGCAAAAGGAGTCAGGTCGGGGGGTATCTGATGGGATTATTTTGAGGTA
CAGGATATCTTGCTGCTGCGTTAAAAACTGAGCTGGTTTGGTTTTATTTC
CAGCAGAAGCGTGAGATGGAAAGAAATAGTGGAAAAAAATGGAAGCTACC
GTGCAGGAGTGAAAACGTGCATTTTCCATGCCCTTGTCCGTTTTTGCTTC
TAGAAGATGAGCCTTCCCACAAACCAATCCATTTTTCCTCTTTGCGGCGT
ATAAGCTTGCACAGCAGCATTCGAGACGTAGCGTTCTGGCAGTGCAAGTC
ATTTTTCCTCCAATGACGGAAGATTCGTGCCGTTGTAGAGGAATTTTAAG
GGTTTACACAGATGACAATATGTAGCGGTAAAATAGACCCGCAATCTGAG
GATGACATCGAGGGAGATGCTGAATACGAGTTGACTACCTAAAAAGGGCT
CTAGATCCGTATAGAGGCGTTTCCGAGAGATTCAAAGGCTTTGGTACCCT
TTAATGAGGACCTGCAAGAACGTCAAGTTGAGTGGTATTAAAATATTGC

Coding sequence (CDS) from alignment at CM002458.1:18975..21223-

>rna1746 ID=rna1746|Name=rna1746|organism=Nannochloropsis gaditana|type=CDS|length=2178bp|location=Sequence derived from alignment at CM002458.1:18975..21223- (Nannochloropsis gaditana)
GACGGAGATCATCGCGTACTCAGATGCTGCCCATCGCTTTGAAGAAATCG
GCGCCAAGGTGATCGGCATCTCTACCGACACGGAAGAATCGCACCTGGCG
TGGGTGCGCACGCCCCGCAAGAGAGGAGGCTTGGGTCACATGCAGATCCC
CCTGGTCGCCGACGTGACCAAGACCATCGCCGCGGACTACGGCGTGCTCC
TGGAGGACATTGGGATAGCCTTGCGGGGCCTCTTCCTCATCGATCCGGAG
GGGGTGCTGCAGCAGATTACGGTGAACAACCTCCCTGTCGGCCGTAATGT
GGACGAGACCATTCGACTCATCCAAGCCTTCCAATTCGTGGCCAAACACG
GCGAGGTGCGTGGGGATGGGAGCCTGAAGGAGCAGAAAGGGGGGTCGAGG
AAAAGGGGAGAGGATGGGGGACGAAGGGATAGGGAATGGGGAGGGGCCAG
AGGCGCCCTGGAGGGGGGGTCCCTGCCGACCGTGGAGACTGGGATCGCCG
CACAAGGGGCGTCTCCTAGGGGGAGACCGTGGCATGAAGCTGTCGTCGTC
CGCAGGGCGAGCGGCATATTTTAACCGTGGTAGACGGGGAATTGACGAAG
ATCTCCCTTGCCGACTACAAGGGCAAATACGTAGCTTTGCTTTTCTATCC
TAAGGATTTTACATTCGTCTGCCCATGATCATGCGCAATATTGCCCGCGT
TGGCATCAACGTCCTGGTGCGCCCTCGACGGAGATCATCGCGTACTCAGA
TGCTGCCCATCGCTTTGAAGAAATCGGCGCCAAGGTGATCGGCATCTCTA
CCGACACGGAAGAATCGCACCTGGCGTGGGTGCGCACGCCCCGCAAGAGA
GGAGGCTTGGGTCACATGCAGATCCCCCTGGTCGCCGACGTGACCAAGAC
CATCGCCGCGGACTACGGCGTGCTCCTGGAGGACATTGGGATAGCCTTGC
GGGGCCTCTTCCTCATCGATCCGGAGGGGGTGCTGCAGCAGATTACGGTG
AACAACCTCCCTGTCGGCCGTAATGTGGACGAGACCATTCGACTCATCCA
AGCCTTCCAATTCGTGGCCAAACACGGCGAGGTGCGTGGGGATGGGAGCC
TGAAGGAGCAGAAAGGGGGGTCGAGGAAAAGGGGAGAGGATGGGGGACGA
AGGGATAGGGAATGGGGAGGGGCCAGAGGCGCCCTGGAGGGGGGGTCCCT
GCCGACCGTGGAGACTGGGATCGCCGCACAAGGGGCGTCTCCTAGGGGGA
GACCGTGGCATGAAGCTGTCGTCGTCCGCAGGGCGAGCGGCATATTTTAA
CCGTGGTAGACGGGGAATTGACGAAGATCTCCCTTGCCGACTACAAGGGC
AAATACGTAGCTTTGCTTTTCTATCCTAAGGATTTTACATTCGTCTGCCC
ATGATCATGCGCAATATTGCCCGCGTTGGCATCAACGTCCTGGTGCGCCC
TCGACGGAGATCATCGCGTACTCAGATGCTGCCCATCGCTTTGAAGAAAT
CGGCGCCAAGGTGATCGGCATCTCTACCGACACGGAAGAATCGCACCTGG
CGTGGGTGCGCACGCCCCGCAAGAGAGGAGGCTTGGGTCACATGCAGATC
CCCCTGGTCGCCGACGTGACCAAGACCATCGCCGCGGACTACGGCGTGCT
CCTGGAGGACATTGGGATAGCCTTGCGGGGCCTCTTCCTCATCGATCCGG
AGGGGGTGCTGCAGCAGATTACGGTGAACAACCTCCCTGTCGGCCGTAAT
GTGGACGAGACCATTCGACTCATCCAAGCCTTCCAATTCGTGGCCAAACA
CGGCGAGGTGCGTGGGGATGGGAGCCTGAAGGAGCAGAAAGGGGGGTCGA
GGAAAAGGGGAGAGGATGGGGGACGAAGGGATAGGGAATGGGGAGGGGCC
AGAGGCGCCCTGGAGGGGGGGTCCCTGCCGACCGTGGAGACTGGGATCGC
CGCACAAGGGGCGTCTCCTAGGGGGAGACCGTGGCATGAAGCTGTCGTCG
TCCGCAGGGCGAGCGGCATATTTTAACCGTGGTAGACGGGGAATTGACGA
AGATCTCCCTTGCCGACTACAAGGGCAAATACGTAGCTTTGCTTTTCTAT
CCTAAGGATTTTACATTCGTCTGCCCATGATCATGCGCAATATTGCCCGC
GTTGGCATCAACGTCCTGGTGCGCCCTC

Synonyms

Publications