EWM28928.1, cds1742 (CDS) Nannochloropsis gaditana

Overview
NameEWM28928.1
Unique Namecds1742
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:21118..21169 -
Alignment locationCM002458.1:20788..20887 -
Alignment locationCM002458.1:20084..20657 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28928.1
Productthioredoxin-dependent peroxide reductase
Orig transcript idgnl|cribi|Naga_100142g10.2509.mrna
GenePRX2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:21118..21169 -
CM002458.1supercontigCM002458.1:20788..20887 -
CM002458.1supercontigCM002458.1:20084..20657 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:0016209antioxidant activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR000866AhpC/TSA
Homology
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|585111394|gb|EWM28928.1| (thioredoxin-dependent peroxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 485.723 bits (1249), Expect = 1.656e-173
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MIMRNIARVGINVLVRPPVVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEVRGDGSLKEQKGGSRKRGEDGGRRDREWGGARGALEGGSLPTVETGIAAQGASPRGRPWHEAVVVRRASGIF 241
            MIMRNIARVGINVLVRPPVVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEVRGDGSLKEQKGGSRKRGEDGGRRDREWGGARGALEGGSLPTVETGIAAQGASPRGRPWHEAVVVRRASGIF
Sbjct:    1 MIMRNIARVGINVLVRPPVVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEVRGDGSLKEQKGGSRKRGEDGGRRDREWGGARGALEGGSLPTVETGIAAQGASPRGRPWHEAVVVRRASGIF 241          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|302852793|ref|XP_002957915.1| (hypothetical protein VOLCADRAFT_68651 [Volvox carteri f. nagariensis] >gi|300256792|gb|EFJ41051.1| hypothetical protein VOLCADRAFT_68651, partial [Volvox carteri f. nagariensis])

HSP 1 Score: 237.269 bits (604), Expect = 1.731e-75
Identity = 105/152 (69.08%), Postives = 129/152 (84.87%), Query Frame = 0
Query:   19 VVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV 170
            VVDGE+TKISLADY+GKYV L FYPKDFTFVCPTEIIA+SD A  FE +  ++I  STDTEE HLAW+R PR RGGLG MQIP++AD TK I+A YGVL+E +GIALRGLF+I+P+GV+Q +T+N+LP+GR+VDE +R +QA QF A+HGEV
Sbjct:    3 VVDGEITKISLADYRGKYVCLFFYPKDFTFVCPTEIIAFSDRAKEFEALNCQLIAASTDTEECHLAWIRNPRNRGGLGFMQIPILADTTKAISARYGVLIEQLGIALRGLFIINPQGVVQHVTINDLPIGRSVDEALRTLQAIQFHAQHGEV 154          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|298714597|emb|CBJ27588.1| (2-cys peroxiredoxin [Ectocarpus siliculosus])

HSP 1 Score: 241.506 bits (615), Expect = 4.641e-75
Identity = 116/184 (63.04%), Postives = 143/184 (77.72%), Query Frame = 0
Query:   19 VVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV------RGDGSLKEQKGGSRKRGEDGGRRDRE 196
            VVDG++  +S  DYKGK+V LLFYPKD+TFVCPTEIIA+SD    FE +GA+V+GISTDTE+SHLAW R PRKRGGLGHM+IPLVAD TK I+ADYGVL+  +GIALRGLF+I+PEG+L+Q+T+NNL +GR+VDET+RLIQA QF+AKHGEV       GD ++K     S +    G     E
Sbjct:   88 VVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYFSSGATESEE 271          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|159465035|ref|XP_001690737.1| (peroxiredoxin [Chlamydomonas reinhardtii] >gi|158270361|gb|EDO96214.1| peroxiredoxin, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 234.572 bits (597), Expect = 5.160e-75
Identity = 104/158 (65.82%), Postives = 132/158 (83.54%), Query Frame = 0
Query:   13 VLVRPPVVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV 170
            + V   VVDGE+TKISL+DYKGKYV L FYPKDFTFVCPTEIIA+SD A  F     ++I  STDTEE+HLAW+RTPR RGGLG+MQIP++AD TK I+A YGVL+E +G+ALRGLF+I+P+GV+Q +T+N+LP+GR+VDE +R +QA Q+ A+HGEV
Sbjct:    2 MFVSAAVVDGEITKISLSDYKGKYVCLFFYPKDFTFVCPTEIIAFSDRAKEFAAANCQLIAASTDTEETHLAWIRTPRNRGGLGYMQIPILADTTKDISARYGVLIEKLGVALRGLFIINPQGVVQHVTINDLPIGRSVDEALRTLQAIQYHAEHGEV 159          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|1205893448|gb|OWF43851.1| (Thioredoxin-dependent peroxide reductase, mitochondrial [Mizuhopecten yessoensis])

HSP 1 Score: 236.113 bits (601), Expect = 8.833e-75
Identity = 112/176 (63.64%), Postives = 137/176 (77.84%), Query Frame = 0
Query:   19 VVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEVRG------DGSLKEQKGGSRKRGE 188
            VVDG+   ISLAD+KGKYV L FYP DFTFVCPTEIIA+SD   RF ++  +VIG+STD+  SHLAW+ TPRK+GGLG +  PL+AD  K I+ DYGVLLED G+ALRGLFLIDPEGV++Q+T+N+LPVGR+VDETIRLIQAFQFV KHGEV        + ++K    GS++  E
Sbjct:   71 VVDGQFKNISLADFKGKYVVLFFYPLDFTFVCPTEIIAFSDNMQRFRDLNTEVIGVSTDSHFSHLAWINTPRKQGGLGGLNYPLLADFKKEISRDYGVLLEDAGVALRGLFLIDPEGVVRQMTINDLPVGRSVDETIRLIQAFQFVEKHGEVCPANWKPEEATIKPDPAGSKEYFE 246          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|1207953651|ref|XP_021366926.1| (peroxiredoxin-like [Mizuhopecten yessoensis])

HSP 1 Score: 236.113 bits (601), Expect = 9.318e-75
Identity = 112/176 (63.64%), Postives = 137/176 (77.84%), Query Frame = 0
Query:   19 VVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEVRG------DGSLKEQKGGSRKRGE 188
            VVDG+   ISLAD+KGKYV L FYP DFTFVCPTEIIA+SD   RF ++  +VIG+STD+  SHLAW+ TPRK+GGLG +  PL+AD  K I+ DYGVLLED G+ALRGLFLIDPEGV++Q+T+N+LPVGR+VDETIRLIQAFQFV KHGEV        + ++K    GS++  E
Sbjct:   71 VVDGQFKNISLADFKGKYVVLFFYPLDFTFVCPTEIIAFSDNMQRFRDLNTEVIGVSTDSHFSHLAWINTPRKQGGLGGLNYPLLADFKKEISRDYGVLLEDAGVALRGLFLIDPEGVVRQMTINDLPVGRSVDETIRLIQAFQFVEKHGEVCPANWKPEEATIKPDPAGSKEYFE 246          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|1183497054|gb|ORZ20708.1| (thioredoxin-like protein [Absidia repens])

HSP 1 Score: 235.343 bits (599), Expect = 2.430e-74
Identity = 111/175 (63.43%), Postives = 136/175 (77.71%), Query Frame = 0
Query:   17 PPVVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV------RGDGSLKEQKGGSRK 185
            P VVDGE   +SL+DYKGKYV   +YP DFTFVCPTEIIA+SD    FE +   VIG STD+E SHLAW+ TPRK GGLG M+IPLVAD TK+IA  YGVLLE+ G+ALRGLF+IDP+GVL+QITVN+LPVGR+VDET+RL+QAF+F  +HGEV      +GD ++K     S++
Sbjct:   73 PAVVDGEFKDVSLSDYKGKYVVFFWYPMDFTFVCPTEIIAFSDRIKEFEALDCAVIGASTDSEFSHLAWINTPRKEGGLGDMKIPLVADKTKSIAKSYGVLLENAGVALRGLFIIDPKGVLRQITVNDLPVGRSVDETLRLVQAFKFTDEHGEVCPAGWNQGDKTIKPSVKDSKE 247          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|1032150944|gb|OAO14619.1| (thioredoxin-dependent peroxide reductase [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 237.269 bits (604), Expect = 7.102e-74
Identity = 102/154 (66.23%), Postives = 132/154 (85.71%), Query Frame = 0
Query:   17 PPVVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV 170
            P VVD ++T ++L DY+GKYV L FYPKDFTFVCPTEIIA+SD A  FE++  K++  S DT ESHLAW++TPRK+GGLG+MQIP++ D TK IA+ YGVL+ D+G+ALRGLF+I+P+GV++QIT+NNLPVGR+VDE +RL+QAFQFV +HGEV
Sbjct:   53 PAVVDNDITTVNLEDYRGKYVVLFFYPKDFTFVCPTEIIAFSDRAQEFEKLNTKLLACSCDTVESHLAWIKTPRKKGGLGNMQIPIIGDNTKEIASKYGVLVNDLGVALRGLFIINPQGVIEQITMNNLPVGRSVDEVLRLVQAFQFVEQHGEV 206          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|961090751|ref|XP_014771915.1| (PREDICTED: peroxiredoxin-2-like [Octopus bimaculoides] >gi|918321234|gb|KOF89260.1| hypothetical protein OCBIM_22013391mg [Octopus bimaculoides])

HSP 1 Score: 232.261 bits (591), Expect = 1.884e-73
Identity = 105/152 (69.08%), Postives = 130/152 (85.53%), Query Frame = 0
Query:   19 VVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV 170
            VV+GE   I LADYKGKY+ L FYP DFTFVCPTEIIA+SD   +F+EI A+V+G+S D+  SHLAW+ TPRK GGLG ++ PL++D++K IA+DYGVLLE+ GIALRGLF+IDP G+L+QIT+N+LPVGR+VDETIRLI+AFQFV KHGEV
Sbjct:   54 VVNGEFKDIKLADYKGKYLVLFFYPLDFTFVCPTEIIAFSDNIKKFKEINAEVVGVSIDSHFSHLAWINTPRKEGGLGQLKYPLLSDLSKQIASDYGVLLENPGIALRGLFIIDPNGILRQITINDLPVGRSVDETIRLIKAFQFVEKHGEV 205          
BLAST of EWM28928.1 vs. NCBI_GenBank
Match: gi|923123285|ref|XP_013755111.1| (peroxiredoxin [Thecamonas trahens ATCC 50062] >gi|906559559|gb|KNC52802.1| peroxiredoxin [Thecamonas trahens ATCC 50062])

HSP 1 Score: 230.72 bits (587), Expect = 3.151e-73
Identity = 108/176 (61.36%), Postives = 139/176 (78.98%), Query Frame = 0
Query:   19 VVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEEIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV------RGDGSLKEQKGGSRKRGE 188
            VVDG+  KISL DYKG+++   FYP DFTFVCPTEIIA+SD    F+ IGA+V+G S D+E SHLAW+ TPRK+GGLG M+IPL++D+TK ++ DYGVLLED GI+LRGLF+IDP G L+QITVN+LPVGR+VDET+RLI+AFQFV +HGEV       G+ ++K +   S++  E
Sbjct:   24 VVDGDFKKISLDDYKGQWLVFFFYPLDFTFVCPTEIIAFSDRVEEFKAIGAEVVGCSVDSEFSHLAWINTPRKQGGLGEMKIPLLSDITKQVSRDYGVLLEDEGISLRGLFIIDPTGTLRQITVNDLPVGRSVDETLRLIKAFQFVEEHGEVCPANWTPGESTIKPEVAASKEYFE 199          
The following BLAST results are available for this feature:
BLAST of EWM28928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111394|gb|EWM28928.1|1.656e-173100.00thioredoxin-dependent peroxide reductase [Nannochl... [more]
gi|302852793|ref|XP_002957915.1|1.731e-7569.08hypothetical protein VOLCADRAFT_68651 [Volvox cart... [more]
gi|298714597|emb|CBJ27588.1|4.641e-7563.042-cys peroxiredoxin [Ectocarpus siliculosus][more]
gi|159465035|ref|XP_001690737.1|5.160e-7565.82peroxiredoxin [Chlamydomonas reinhardtii] >gi|1582... [more]
gi|1205893448|gb|OWF43851.1|8.833e-7563.64Thioredoxin-dependent peroxide reductase, mitochon... [more]
gi|1207953651|ref|XP_021366926.1|9.318e-7563.64peroxiredoxin-like [Mizuhopecten yessoensis][more]
gi|1183497054|gb|ORZ20708.1|2.430e-7463.43thioredoxin-like protein [Absidia repens][more]
gi|1032150944|gb|OAO14619.1|7.102e-7466.23thioredoxin-dependent peroxide reductase [Blastocy... [more]
gi|961090751|ref|XP_014771915.1|1.884e-7369.08PREDICTED: peroxiredoxin-2-like [Octopus bimaculoi... [more]
gi|923123285|ref|XP_013755111.1|3.151e-7361.36peroxiredoxin [Thecamonas trahens ATCC 50062] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1746rna1746Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications