EWM28971.1, cds1702 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|585111459|gb|EWM28971.1| (glutamate-rich wd repeat containing 1 [Nannochloropsis gaditana]) HSP 1 Score: 478.019 bits (1229), Expect = 1.982e-170 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0 Query: 1 MVKLSRSSKRVTTQSEKGGREIGKTGGEGGKRSRGGDSTEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEGMEGRSALGAV 241 MVKLSRSSKRVTTQSEKGGREIGKTGGEGGKRSRGGDSTEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEGMEGRSALGAV Sbjct: 1 MVKLSRSSKRVTTQSEKGGREIGKTGGEGGKRSRGGDSTEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEGMEGRSALGAV 241
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|970635396|gb|KUF80288.1| (Glutamate-rich WD repeat-containing protein [Phytophthora nicotianae] >gi|970656891|gb|KUF94847.1| hypothetical protein AM588_10008621 [Phytophthora nicotianae]) HSP 1 Score: 117.472 bits (293), Expect = 8.156e-27 Identity = 66/162 (40.74%), Postives = 98/162 (60.49%), Query Frame = 0 Query: 49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210 G R ++ +++L FEDP+ D+ E+EE ++E D DEE G A RA + DM+ +E A V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG R+RFP+T++ GTQA A N++TVMK++ + KT Sbjct: 13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASRADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|566024537|gb|ETI47448.1| (hypothetical protein F443_08365 [Phytophthora parasitica P1569]) HSP 1 Score: 116.316 bits (290), Expect = 2.052e-26 Identity = 74/191 (38.74%), Postives = 113/191 (59.16%), Query Frame = 0 Query: 49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEG---MEGRS 236 G R ++ +++L FEDP+ D+ E+EE ++E D DEE G A A + DM+ +E A V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG R+RFP+T++ GTQA A N++TVMK++ + KT G +S+ ++ ++D E EG +E RS Sbjct: 13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKTKHNDGSDSEDDDSDDDNETEGDPVLESRS 191
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|567961833|gb|ETK87370.1| (hypothetical protein L915_08197 [Phytophthora parasitica] >gi|567990559|gb|ETL40787.1| hypothetical protein L916_08121 [Phytophthora parasitica] >gi|570986168|gb|ETP45270.1| hypothetical protein F442_08307 [Phytophthora parasitica P10297]) HSP 1 Score: 115.546 bits (288), Expect = 3.560e-26 Identity = 65/162 (40.12%), Postives = 98/162 (60.49%), Query Frame = 0 Query: 49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210 G R ++ +++L FEDP+ D+ E+EE ++E D DEE G A A + DM+ +E A V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D+++D LG R+RFP+T++ GTQA A N++TVMK++ + KT Sbjct: 13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|675192489|ref|XP_008905129.1| (hypothetical protein PPTG_11740 [Phytophthora parasitica INRA-310] >gi|568094520|gb|ETN09296.1| hypothetical protein PPTG_11740 [Phytophthora parasitica INRA-310] >gi|570328198|gb|ETO76146.1| hypothetical protein F444_08424 [Phytophthora parasitica P1976] >gi|570951973|gb|ETP17230.1| hypothetical protein F441_08350 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 114.775 bits (286), Expect = 5.932e-26 Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 0 Query: 49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210 G R ++ +++L FEDP+ D+ E+EE ++E D DEE G A A + DM+ +E A V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG R+RFP+T++ GTQA A N++TVMK++ + KT Sbjct: 13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|568019779|gb|ETL93920.1| (hypothetical protein L917_08019 [Phytophthora parasitica]) HSP 1 Score: 114.775 bits (286), Expect = 5.932e-26 Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 0 Query: 49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210 G R ++ +++L FEDP+ D+ E+EE ++E D DEE G A A + DM+ +E A V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG R+RFP+T++ GTQA A N++TVMK++ + KT Sbjct: 13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|807745131|ref|XP_012177360.1| (predicted protein [Fibroporia radiculosa] >gi|403411377|emb|CCL98077.1| predicted protein [Fibroporia radiculosa]) HSP 1 Score: 114.775 bits (286), Expect = 9.310e-26 Identity = 65/177 (36.72%), Postives = 104/177 (58.76%), Query Frame = 0 Query: 37 DSTEDVLARGGQGGGRGREGEEKKETKDNL-RFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYR 212 DS+ +R + +G +G + ++D + FED +EDEFE +EE+ + E +++E+GMD++ + A+ E D + A P V+ PG+ H+L+ E L D + Y+M H + WPCLSFD+L+D LG R RFP T Y GTQAD A N+++V K++++ +T R Sbjct: 10 DSSSLTNSRANKRAPKGDKGRQNAASEDEMGEFEDGWEDEFESDEEVVDGAE--NEQEDGMDVD-----QVLPAIEESDEK------PAAPNVFIPGV-HKLESDEILEPDDTVYIMRHSMNVNWPCLSFDVLRDNLGDQRQRFPATAYIVAGTQADTAKNNEISVYKMSSLQRTQR 172
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|568050229|gb|ETM47184.1| (hypothetical protein L914_08083 [Phytophthora parasitica]) HSP 1 Score: 114.005 bits (284), Expect = 1.488e-25 Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = 0 Query: 49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210 G R ++ +++L FEDP+ D+ E+EE ++E D DEE G A A + +M+ +E A V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D+++D LG R+RFP+T++ GTQA A N++TVMK++ + KT Sbjct: 13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVNMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|301106937|ref|XP_002902551.1| (glutamate-rich WD repeat-containing protein [Phytophthora infestans T30-4] >gi|262098425|gb|EEY56477.1| glutamate-rich WD repeat-containing protein [Phytophthora infestans T30-4]) HSP 1 Score: 113.62 bits (283), Expect = 1.644e-25 Identity = 65/157 (41.40%), Postives = 96/157 (61.15%), Query Frame = 0 Query: 54 REGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210 R ++ +++L FEDP+ D+ E+EE +VE D DEE G A A + DM+ +E A V KV+ PG++ +L + E L YD SAY MY+ +T EWP LS D+++D LG R+RFP+T++ GTQA A N++TVMK++ + KT Sbjct: 18 RHTAQQHNGEEDLVFEDPFGDDMEDEE----MVESDGDEE-------VVDGEAAGADKDVDMDGDEQAEKKVKKVFMPGVD-KLHDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|299116630|emb|CBN76255.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 113.62 bits (283), Expect = 2.412e-25 Identity = 75/197 (38.07%), Postives = 111/197 (56.35%), Query Frame = 0 Query: 25 TGGEGGKRSRGGD-----STEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVP---KVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRR 213 T KR R G+ + + V GGG G+ KE ++ L FEDP+ DEF+ E+ + + + +E+ D A A +A +A P KV+ G++ +L EG+EL YD +AY MYH L PEWPCLSFD+++D+LG R+R+P T++A GTQAD A N+L VMKL+++ +T R+ Sbjct: 24 TSQSTSKRQRSGEDAATSTAKKVAPHATTGGG----GDGSKEEEEELVFEDPFGDEFDPEDI--DAMNAEPEEDGDDDDGGMDAETGDAAASGSSTAATDAEGAAAPQETKVWRAGVD-DLAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRK 213 The following BLAST results are available for this feature:
BLAST of EWM28971.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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