rna1698, rna1698 (mRNA) Nannochloropsis gaditana

Overview
Namerna1698
Unique Namerna1698
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length518
Alignment locationCM002457.1:1279407..1280556 +

Link to JBrowse

Properties
Property NameValue
Product9-cis-epoxycarotenoid dioxygenase
Orig transcript idgnl|cribi|Naga_101940g1.3787.mrna
Orig protein idgnl|cribi|Naga_101940g1.3787
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1279407..1280556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101940g1gene1635Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1698rna1698-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28979.1cds1694Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1698 ID=rna1698|Name=rna1698|organism=Nannochloropsis gaditana|type=mRNA|length=518bp
TGTATTTAAATAATATCAGGGCGTTTCGAACCCTTTTCGGTGCCAGATAG
CTCCAGGGACACAATGTGACGGTTCCTTGCCTCGTCCTGTCTCGTTCTTT
GTTTCGCTTGGACTCACGTCTCCTCATACATGTATCGTGTTGTAGATCAT
TCATGGGAAGTATTTGGCCACTCGTACGCAGTGCGTTGGGGGCACTTTTG
TCCGTGACTGAGTCCGGAGTATTCTGGCTGCAAGGATCAGAAACGATACC
ACGGGGTGAGAACAATCGTTTCTTGTGGGGGAATTATGCCCCGGTGGATG
GAGATCTGTTCGTGGCCAACATCCCCGTATCAGAGGGTAAATTGCCCCCT
GAGATCACCGGGTTATTCGCACGCAACGGACCGAATCCAGCCTTTATATC
GGCAGGATATCACTGGTTCGACGGCTCGGGCTATATCCACGCGGTGCACG
TGGACGCCGGCACGCAGACCGCCAATTACTCGGGTCAATTCGTGCAGACA
CCGATTCTGCAGGTAGGA
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protein sequence of rna1698

>rna1698-protein ID=rna1698-protein|Name=rna1698|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MQDAESSTSSSPSFSILAAHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLL
AHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVD
LEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLT
FTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFH
ALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL
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mRNA from alignment at CM002457.1:1279407..1280556+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1698 ID=rna1698|Name=rna1698|organism=Nannochloropsis gaditana|type=mRNA|length=1150bp|location=Sequence derived from alignment at CM002457.1:1279407..1280556+ (Nannochloropsis gaditana)
agaaaaaaaatgagaCATACGTGGCTGCATGCAGGACGCTGagtcttcca
cctcctcctccccttccttctccattcTAGCTGCTCATCTCTACGAGTAc
acgctcctccttcctcctccttcctctccctcctcctcctcctccccctc
ctcctcctcctcctcctcctgcctcctcgcccactcccgcctcatccccg
cctcccacgaccCGCGACTGTGGGAGTTCCCACAAATCAACCagaaaaag
gcgggaaggaagagcagaTTTATGTTTGCGACCGTCTTCAATcagcacgg
ggagggagagggcttcgTGAAGGTAgatttggagggagagaggggagaag
gaggggcgcccTACGCAGAAGTCAAGTATGAGGAAGGGACCTTCGGCGGG
GAAGTCATCTTTGtgccacgggagggagagagggagggcggtggagaaag
ggaggaggacgacggctATCTGCTTACCTTCACCCATTCGTATCCGAGAA
ACGTGAGTGAATTTCGGGTCTATGatgcgaggaggatggagggagggggg
gaggaagggaaggagggagggagggaggcgttggTGGCCTCGGTGGCGCT
GCCTCGACGGGTCCCATGGGGCTTTCACGCCCTCTGGGTGGAGCAAAACG
AGCTCGAGAATCAACGCGACAGAGTCGTGttaaggaaagggaaggtcgtg
gaggagggaggaggggcggcaaggaaggcgaaggaggaactCTGAtgcca
aggaggaaaagcgagggggCGTGGATCGTCGAGCGAGGAcaaaggatgga
aggagggggagagtggaggctgaagggagggggagaatcagaagaaggga
gtggggaagaggtaagagggaggagagagggagagagggagggagggagg
gagggagggagggaggaggttgccagGATGAGGCGTGCTCCTGCGAGGGC
ACTATAGCGTGGTTCCATGCATCGTCTTGACCTTTGACACTTGCACACAC
GTACATacatgaaaaaggaaggaaagataTTCACCAAAAAGGCACGACAA
TAAACAAGAATGTGAAGCCTCTTGTCTGATTCGTGTGAATGTTGGATGGA
ATTTGTCATGCCTGTGCTCGCAAAATGATACATTGTGCGCCCTTCTCACA
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Coding sequence (CDS) from alignment at CM002457.1:1279407..1280556+

>rna1698 ID=rna1698|Name=rna1698|organism=Nannochloropsis gaditana|type=CDS|length=717bp|location=Sequence derived from alignment at CM002457.1:1279407..1280556+ (Nannochloropsis gaditana)
ATGCAGGACGCTGagtcttccacctcctcctccccttccttctccattcT
AGCTGCTCATCTCTACGAGTAcacgctcctccttcctcctccttcctctc
cctcctcctcctcctccccctcctcctcctcctcctcctcctgcctcctc
gcccactcccgcctcatccccgcctcccacgaccCGCGACTGTGGGAGTT
CCCACAAATCAACCagaaaaaggcgggaaggaagagcagaTTTATGTTTG
CGACCGTCTTCAATcagcacggggagggagagggcttcgTGAAGGTAgat
ttggagggagagaggggagaaggaggggcgcccTACGCAGAAGTCAAGTA
TGAGGAAGGGACCTTCGGCGGGGAAGTCATCTTTGtgccacgggagggag
agagggagggcggtggagaaagggaggaggacgacggctATCTGCTTACC
TTCACCCATTCGTATCCGAGAAACGTGAGTGAATTTCGGGTCTATGatgc
gaggaggatggagggagggggggaggaagggaaggagggagggagggagg
cgttggTGGCCTCGGTGGCGCTGCCTCGACGGGTCCCATGGGGCTTTCAC
GCCCTCTGGGTGGAGCAAAACGAGCTCGAGAATCAACGCGACAGAGTCGT
Gttaaggaaagggaaggtcgtggaggagggaggaggggcggcaaggaagg
cgaaggaggaactCTGA
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Synonyms
Publications