EWM28979.1, cds1694 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|585111470|gb|EWM28979.1| (9-cis-epoxycarotenoid dioxygenase [Nannochloropsis gaditana]) HSP 1 Score: 479.559 bits (1233), Expect = 4.502e-171 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0 Query: 1 MQDAESSTSSSPSFSILAAHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLLAHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 238 MQDAESSTSSSPSFSILAAHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLLAHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL Sbjct: 1 MQDAESSTSSSPSFSILAAHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLLAHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 238
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|553194435|ref|XP_005855954.1| (9-cis-epoxycarotenoid dioxygenase [Nannochloropsis gaditana CCMP526] >gi|422293097|gb|EKU20397.1| 9-cis-epoxycarotenoid dioxygenase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 309.686 bits (792), Expect = 3.733e-105 Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0 Query: 82 MFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 238 MFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEG REALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL Sbjct: 1 MFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGEREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 157
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|148907749|gb|ABR17001.1| (unknown [Picea sitchensis]) HSP 1 Score: 101.293 bits (251), Expect = 4.593e-21 Identity = 60/154 (38.96%), Postives = 81/154 (52.60%), Query Frame = 0 Query: 66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGE-------RGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212 +FP+IN+K GRK R+++ TV + + +G VK DL+ E GG + G FG E IFVP R+ G + EEDDGYL+ F H SE V+DA+ M VA V LP RVP+GFHA +V + +L+NQ Sbjct: 401 DFPRINEKYIGRKQRYVYGTVLDSVTQVKGLVKFDLQAEPEIGKSQIEVGGNVLGVFCFGPGRFGSEAIFVP----RDSGPDLEEDDGYLICFVHDENTGKSEVNVFDAKTMS-----------PEPVAIVYLPTRVPYGFHAFFVSEEQLQNQ 539
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|116787481|gb|ABK24523.1| (unknown [Picea sitchensis]) HSP 1 Score: 101.293 bits (251), Expect = 4.821e-21 Identity = 60/154 (38.96%), Postives = 81/154 (52.60%), Query Frame = 0 Query: 66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGE-------RGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212 +FP+IN+K GRK R+++ TV + + +G VK DL+ E GG + G FG E IFVP R+ G + EEDDGYL+ F H SE V+DA+ M VA V LP RVP+GFHA +V + +L+NQ Sbjct: 401 DFPRINEKYIGRKQRYVYGTVLDSVTQVKGLVKFDLQAEPEIGKSQIEVGGNVLGVFCFGPGRFGSEAIFVP----RDSGPDLEEDDGYLICFVHDENTGKSEVNVFDAKTMS-----------PEPVAIVYLPTRVPYGFHAFFVSEEQLQNQ 539
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|1041793290|dbj|BAV19075.1| (9-cis-epoxycarotenoid dioxygenase, partial [Potamogeton wrightii]) HSP 1 Score: 96.6709 bits (239), Expect = 1.323e-19 Identity = 60/151 (39.74%), Postives = 86/151 (56.95%), Query Frame = 0 Query: 66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPRE------GEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELE 210 EF INQK G+K+R+++ + N H + G VK+DLE + A + ++ EG FGGE FV + G REG E+EEDDG++LT+ H R+ S+F V DA+ E +VA V LPRRVP+GFH ++ + +LE Sbjct: 309 EFGAINQKYVGKKNRYVYIGMGNPHPKISGIVKLDLEASGSD--AVVGKREFGEGCFGGEPFFVANDVDIGNPGIREG--EQEEDDGFVLTYVHDEKRDQSKFLVMDAKSPE-----------LDIVAEVLLPRRVPYGFHGTFIREKDLE 444
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|116779905|gb|ABK21471.1| (unknown [Picea sitchensis]) HSP 1 Score: 95.5153 bits (236), Expect = 1.376e-19 Identity = 62/154 (40.26%), Postives = 81/154 (52.60%), Query Frame = 0 Query: 66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVD--LEGERGE-----GGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212 +FP+IN+K GRK RF++AT + + EG VK D LE E G+ GG ++ G +G E IFVPRE + EEDDGYL+ F H SE V DA+ M VA V LP RVP+GFHA +V + +L+ Q Sbjct: 187 DFPRINEKYIGRKQRFVYATRLDSLAKVEGIVKFDLQLEPEVGKEQIEVGGNVKGIFQFGHGRYGSEAIFVPRESDV----GLEEDDGYLICFVHDENTRKSEVNVIDAKTMSSEP-----------VAVVPLPARVPYGFHAFFVTEEQLKYQ 325
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|78191069|gb|ABB29859.1| (carotene cleavage dioxygenase, partial [Nicotiana langsdorffii x Nicotiana sanderae]) HSP 1 Score: 94.7449 bits (234), Expect = 2.061e-19 Identity = 59/154 (38.31%), Postives = 78/154 (50.65%), Query Frame = 0 Query: 66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDL--EGERGE-----GGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212 +FP+IN+ GRK R+++ T+ N + G VK DL E E G+ GG G FG E IFVP R+ G E EEDDGYL+ F H S V DA+ M VA V LP+RVP+GFHA +V + +++ Q Sbjct: 187 DFPRINENYTGRKQRYVYGTILNNVAKITGVVKFDLHAEPETGKTKLEVGGNVLGIFDLGPGRFGSEAIFVP----RQPGTECEEDDGYLILFVHDENTGKSSVNVIDAKTMSAEP-----------VAVVELPKRVPYGFHAFFVTEEQIQEQ 325
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|1137198237|gb|OMO69765.1| (Carotenoid oxygenase [Corchorus capsularis]) HSP 1 Score: 96.6709 bits (239), Expect = 2.105e-19 Identity = 60/155 (38.71%), Postives = 79/155 (50.97%), Query Frame = 0 Query: 66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEV--------KYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212 +FP++N+ GRK R+++ T+ + + +G VK DL GE EG A EV G FG E +FVP RE G EEDDGYL+ F H S V DA+ M VA V LP RVP+GFHAL+V + +L+ Q Sbjct: 416 DFPRVNENYTGRKQRYVYGTILDSIAKVKGIVKFDLHGEPEEGKAK-IEVGGNVQGIFDLGPGRFGSEAVFVP----REAGTACEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADP-----------VAVVDLPHRVPYGFHALFVTEEQLQEQ 554
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|1001612066|gb|KXS15832.1| (carotenoid oxygenase [Gonapodya prolifera JEL478]) HSP 1 Score: 96.2857 bits (238), Expect = 2.901e-19 Identity = 60/161 (37.27%), Postives = 80/161 (49.69%), Query Frame = 0 Query: 66 EFPQINQKKAGRKSRFMFATVFNQHGEGE----GFVKVDLEGER---------GEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQR 213 +FP N A R++R+++ V GEG G VK DL+ GE A +KY G +GGE +FVPR+ G E EDDG+L+ F + SE VYDA+ M+ VA + LP RVP+GFH LWV Q ++E QR Sbjct: 379 DFPVTNSNYACRRARYVYEGV--AAGEGSIKIGGIVKFDLDAATSNPTPQLLSGEKLADRKVIKYPPGVYGGEAVFVPRKTSLSGT-EEVEDDGFLVVFVRNEEAETSELHVYDAKSMDAKP-----------VARITLPHRVPFGFHGLWVTQEQIEKQR 525
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|302815546|ref|XP_002989454.1| (hypothetical protein SELMODRAFT_447678 [Selaginella moellendorffii] >gi|300142848|gb|EFJ09545.1| hypothetical protein SELMODRAFT_447678 [Selaginella moellendorffii]) HSP 1 Score: 96.2857 bits (238), Expect = 3.094e-19 Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 0 Query: 57 PASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGE---RGEGGAPYA-----EVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212 P S P + EFP+IN+ GRK R+++A VF+ +G K DL + +GG P E Y FG EV+FVP+ +++ +EDDGYL++F + SE V DA+ M VA V++P R+P+GFH ++V +++LENQ Sbjct: 415 PLSKGPAV-EFPRINENYIGRKQRYVYAAVFHDQVRIKGVAKFDLHKDPELSKDGGNPVGSNVVGEFMYGSRRFGSEVVFVPKSSDKDA----DEDDGYLISFVYDERAGKSEAVVIDAKTMAADP-----------VAVVSIPVRIPYGFHLIFVNEDQLENQ 562 The following BLAST results are available for this feature:
BLAST of EWM28979.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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