EWM28979.1, cds1694 (CDS) Nannochloropsis gaditana

Overview
NameEWM28979.1
Unique Namecds1694
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1279435..1280151 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28979.1
Product9-cis-epoxycarotenoid dioxygenase
Orig transcript idgnl|cribi|Naga_101940g1.3787.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1279435..1280151 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004294Carotenoid_Oase
Homology
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|585111470|gb|EWM28979.1| (9-cis-epoxycarotenoid dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 479.559 bits (1233), Expect = 4.502e-171
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MQDAESSTSSSPSFSILAAHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLLAHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 238
            MQDAESSTSSSPSFSILAAHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLLAHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL
Sbjct:    1 MQDAESSTSSSPSFSILAAHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLLAHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 238          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|553194435|ref|XP_005855954.1| (9-cis-epoxycarotenoid dioxygenase [Nannochloropsis gaditana CCMP526] >gi|422293097|gb|EKU20397.1| 9-cis-epoxycarotenoid dioxygenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 309.686 bits (792), Expect = 3.733e-105
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0
Query:   82 MFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 238
            MFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEG REALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL
Sbjct:    1 MFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGEREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 157          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|148907749|gb|ABR17001.1| (unknown [Picea sitchensis])

HSP 1 Score: 101.293 bits (251), Expect = 4.593e-21
Identity = 60/154 (38.96%), Postives = 81/154 (52.60%), Query Frame = 0
Query:   66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGE-------RGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212
            +FP+IN+K  GRK R+++ TV +   + +G VK DL+ E          GG       +  G FG E IFVP    R+ G + EEDDGYL+ F H      SE  V+DA+ M               VA V LP RVP+GFHA +V + +L+NQ
Sbjct:  401 DFPRINEKYIGRKQRYVYGTVLDSVTQVKGLVKFDLQAEPEIGKSQIEVGGNVLGVFCFGPGRFGSEAIFVP----RDSGPDLEEDDGYLICFVHDENTGKSEVNVFDAKTMS-----------PEPVAIVYLPTRVPYGFHAFFVSEEQLQNQ 539          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|116787481|gb|ABK24523.1| (unknown [Picea sitchensis])

HSP 1 Score: 101.293 bits (251), Expect = 4.821e-21
Identity = 60/154 (38.96%), Postives = 81/154 (52.60%), Query Frame = 0
Query:   66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGE-------RGEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212
            +FP+IN+K  GRK R+++ TV +   + +G VK DL+ E          GG       +  G FG E IFVP    R+ G + EEDDGYL+ F H      SE  V+DA+ M               VA V LP RVP+GFHA +V + +L+NQ
Sbjct:  401 DFPRINEKYIGRKQRYVYGTVLDSVTQVKGLVKFDLQAEPEIGKSQIEVGGNVLGVFCFGPGRFGSEAIFVP----RDSGPDLEEDDGYLICFVHDENTGKSEVNVFDAKTMS-----------PEPVAIVYLPTRVPYGFHAFFVSEEQLQNQ 539          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|1041793290|dbj|BAV19075.1| (9-cis-epoxycarotenoid dioxygenase, partial [Potamogeton wrightii])

HSP 1 Score: 96.6709 bits (239), Expect = 1.323e-19
Identity = 60/151 (39.74%), Postives = 86/151 (56.95%), Query Frame = 0
Query:   66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEVKYEEGTFGGEVIFVPRE------GEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELE 210
            EF  INQK  G+K+R+++  + N H +  G VK+DLE    +  A   + ++ EG FGGE  FV  +      G REG  E+EEDDG++LT+ H   R+ S+F V DA+  E             +VA V LPRRVP+GFH  ++ + +LE
Sbjct:  309 EFGAINQKYVGKKNRYVYIGMGNPHPKISGIVKLDLEASGSD--AVVGKREFGEGCFGGEPFFVANDVDIGNPGIREG--EQEEDDGFVLTYVHDEKRDQSKFLVMDAKSPE-----------LDIVAEVLLPRRVPYGFHGTFIREKDLE 444          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|116779905|gb|ABK21471.1| (unknown [Picea sitchensis])

HSP 1 Score: 95.5153 bits (236), Expect = 1.376e-19
Identity = 62/154 (40.26%), Postives = 81/154 (52.60%), Query Frame = 0
Query:   66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVD--LEGERGE-----GGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212
            +FP+IN+K  GRK RF++AT  +   + EG VK D  LE E G+     GG      ++  G +G E IFVPRE +       EEDDGYL+ F H      SE  V DA+ M               VA V LP RVP+GFHA +V + +L+ Q
Sbjct:  187 DFPRINEKYIGRKQRFVYATRLDSLAKVEGIVKFDLQLEPEVGKEQIEVGGNVKGIFQFGHGRYGSEAIFVPRESDV----GLEEDDGYLICFVHDENTRKSEVNVIDAKTMSSEP-----------VAVVPLPARVPYGFHAFFVTEEQLKYQ 325          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|78191069|gb|ABB29859.1| (carotene cleavage dioxygenase, partial [Nicotiana langsdorffii x Nicotiana sanderae])

HSP 1 Score: 94.7449 bits (234), Expect = 2.061e-19
Identity = 59/154 (38.31%), Postives = 78/154 (50.65%), Query Frame = 0
Query:   66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDL--EGERGE-----GGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212
            +FP+IN+   GRK R+++ T+ N   +  G VK DL  E E G+     GG          G FG E IFVP    R+ G E EEDDGYL+ F H      S   V DA+ M               VA V LP+RVP+GFHA +V + +++ Q
Sbjct:  187 DFPRINENYTGRKQRYVYGTILNNVAKITGVVKFDLHAEPETGKTKLEVGGNVLGIFDLGPGRFGSEAIFVP----RQPGTECEEDDGYLILFVHDENTGKSSVNVIDAKTMSAEP-----------VAVVELPKRVPYGFHAFFVTEEQIQEQ 325          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|1137198237|gb|OMO69765.1| (Carotenoid oxygenase [Corchorus capsularis])

HSP 1 Score: 96.6709 bits (239), Expect = 2.105e-19
Identity = 60/155 (38.71%), Postives = 79/155 (50.97%), Query Frame = 0
Query:   66 EFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGERGEGGAPYAEV--------KYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212
            +FP++N+   GRK R+++ T+ +   + +G VK DL GE  EG A   EV            G FG E +FVP    RE G   EEDDGYL+ F H      S   V DA+ M               VA V LP RVP+GFHAL+V + +L+ Q
Sbjct:  416 DFPRVNENYTGRKQRYVYGTILDSIAKVKGIVKFDLHGEPEEGKAK-IEVGGNVQGIFDLGPGRFGSEAVFVP----REAGTACEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADP-----------VAVVDLPHRVPYGFHALFVTEEQLQEQ 554          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|1001612066|gb|KXS15832.1| (carotenoid oxygenase [Gonapodya prolifera JEL478])

HSP 1 Score: 96.2857 bits (238), Expect = 2.901e-19
Identity = 60/161 (37.27%), Postives = 80/161 (49.69%), Query Frame = 0
Query:   66 EFPQINQKKAGRKSRFMFATVFNQHGEGE----GFVKVDLEGER---------GEGGAPYAEVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQR 213
            +FP  N   A R++R+++  V    GEG     G VK DL+            GE  A    +KY  G +GGE +FVPR+    G  E  EDDG+L+ F  +     SE  VYDA+ M+              VA + LP RVP+GFH LWV Q ++E QR
Sbjct:  379 DFPVTNSNYACRRARYVYEGV--AAGEGSIKIGGIVKFDLDAATSNPTPQLLSGEKLADRKVIKYPPGVYGGEAVFVPRKTSLSGT-EEVEDDGFLVVFVRNEEAETSELHVYDAKSMDAKP-----------VARITLPHRVPFGFHGLWVTQEQIEKQR 525          
BLAST of EWM28979.1 vs. NCBI_GenBank
Match: gi|302815546|ref|XP_002989454.1| (hypothetical protein SELMODRAFT_447678 [Selaginella moellendorffii] >gi|300142848|gb|EFJ09545.1| hypothetical protein SELMODRAFT_447678 [Selaginella moellendorffii])

HSP 1 Score: 96.2857 bits (238), Expect = 3.094e-19
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 0
Query:   57 PASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGE---RGEGGAPYA-----EVKYEEGTFGGEVIFVPREGEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQ 212
            P S  P + EFP+IN+   GRK R+++A VF+     +G  K DL  +     +GG P       E  Y    FG EV+FVP+  +++     +EDDGYL++F +      SE  V DA+ M               VA V++P R+P+GFH ++V +++LENQ
Sbjct:  415 PLSKGPAV-EFPRINENYIGRKQRYVYAAVFHDQVRIKGVAKFDLHKDPELSKDGGNPVGSNVVGEFMYGSRRFGSEVVFVPKSSDKDA----DEDDGYLISFVYDERAGKSEAVVIDAKTMAADP-----------VAVVSIPVRIPYGFHLIFVNEDQLENQ 562          
The following BLAST results are available for this feature:
BLAST of EWM28979.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111470|gb|EWM28979.1|4.502e-171100.009-cis-epoxycarotenoid dioxygenase [Nannochloropsis... [more]
gi|553194435|ref|XP_005855954.1|3.733e-10599.369-cis-epoxycarotenoid dioxygenase [Nannochloropsis... [more]
gi|148907749|gb|ABR17001.1|4.593e-2138.96unknown [Picea sitchensis][more]
gi|116787481|gb|ABK24523.1|4.821e-2138.96unknown [Picea sitchensis][more]
gi|1041793290|dbj|BAV19075.1|1.323e-1939.749-cis-epoxycarotenoid dioxygenase, partial [Potamo... [more]
gi|116779905|gb|ABK21471.1|1.376e-1940.26unknown [Picea sitchensis][more]
gi|78191069|gb|ABB29859.1|2.061e-1938.31carotene cleavage dioxygenase, partial [Nicotiana ... [more]
gi|1137198237|gb|OMO69765.1|2.105e-1938.71Carotenoid oxygenase [Corchorus capsularis][more]
gi|1001612066|gb|KXS15832.1|2.901e-1937.27carotenoid oxygenase [Gonapodya prolifera JEL478][more]
gi|302815546|ref|XP_002989454.1|3.094e-1935.37hypothetical protein SELMODRAFT_447678 [Selaginell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1698rna1698Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications