EWM29073.1, cds1612 (CDS) Nannochloropsis gaditana

Overview
NameEWM29073.1
Unique Namecds1612
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1067738..1068688 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29073.1
Productdehydroascorbate reductase
Orig transcript idgnl|cribi|Naga_100024g18.4331.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1067738..1068688 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
IPR004045Glutathione_S-Trfase_N
Homology
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|585111592|gb|EWM29073.1| (dehydroascorbate reductase [Nannochloropsis gaditana])

HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
Query:    1 MIMRSLVQVSSISLLLLVVRTKAFLRPILPRYSSTLRASSVAVRYITLADATPQSITSRIEGSHTRSSMSSSIALASARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK 316
            MIMRSLVQVSSISLLLLVVRTKAFLRPILPRYSSTLRASSVAVRYITLADATPQSITSRIEGSHTRSSMSSSIALASARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK
Sbjct:    1 MIMRSLVQVSSISLLLLVVRTKAFLRPILPRYSSTLRASSVAVRYITLADATPQSITSRIEGSHTRSSMSSSIALASARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK 316          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|299116565|emb|CBN74753.1| (GSH-dependent dehydroascorbate reductase, monomeric enzymes catalyzing the reduction of DHA into asc [Ectocarpus siliculosus])

HSP 1 Score: 257.684 bits (657), Expect = 5.154e-81
Identity = 139/329 (42.25%), Postives = 189/329 (57.45%), Query Frame = 0
Query:   13 SLLLLVVRTKAFLRPILPR-----YSSTLRASSVAVRYITLA--------------------DATPQSITSRIE-GSHTRSSMSSSIALASARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNAR 315
            S L L+   + F+ PI+ R      ++T RASSV  R +                       D+ P SIT  ++ G   +     +     A++  G            +  +EL CKA  DG ALGDCPF HYV MVL+YKGL ++L P+ P+ KP+WLVE Y G+MPCLV  +EAYT+S  I  Y+EYF+P E  L+++D   +   + K  TSGVFG+ A+ +KN++ ++DP L A  + EL KVD  L+K KGP+L GE +TL D + APKLYH    +AHFKN +I P L +L  YM  I+  + F +SSYPPDVI WGW NAR
Sbjct:    9 SCLALLAPARGFVSPIVTRTPGAQIAATSRASSVRHRAVARRGDLSMRKTGKFVLSKKALNDDSGPTSITVNMKSGEMIKEEKKEAPKEEMAKAGPGL----------LEPDMELFCKAAADGNALGDCPFTHYVHMVLQYKGLPFKLTPVAPDAKPDWLVEDYEGQMPCLVDSKEAYTESANIVDYVEYFYP-EPTLSIKDS--DAVAKAKEVTSGVFGSLAKCIKNLNPKEDPMLIADAMAELKKVDAFLKKGKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNTVISPDLESLHKYMDAIYSHEAFTKSSYPPDVIVWGWNNAR 324          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|1210531456|dbj|GAX09812.1| (hypothetical protein FisN_11Lh214 [Fistulifera solaris])

HSP 1 Score: 174.096 bits (440), Expect = 1.078e-49
Identity = 89/220 (40.45%), Postives = 125/220 (56.82%), Query Frame = 0
Query:   99 IELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNM--DKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK 316
            + L CKAGPDG  +GDCPFCH +++VL    L Y+LIP TPE KP WL++ + GKMP L H    YT+S  I  YL         L +       A   + A +G+F A A+Y+K+   + E+D  L++ L   L ++D  L  T   F  GE  T  D  +AP+LYH++ GVA F+  I       L+ YM+++FD + FQ + YP + + WGW NARK
Sbjct:   18 MTLYCKAGPDGKTIGDCPFCHAIRLVLEELHLAYQLIPATPETKPSWLLDHFEGKMPALRHGNSCYTESSVIIDYL---------LGLSHNQLSQANSNEAANAGLFPAIAKYLKHRPDNDEEDRTLRSKLKTILQRMDANLAGTS--FWNGESFTETDCKIAPQLYHLQCGVAAFQKDIDLEEYANLSGYMKNLFDRESFQSTVYPAETVVWGWSNARK 226          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|1210525011|dbj|GAX16203.1| (chloride intracellular channel protein 2 [Fistulifera solaris])

HSP 1 Score: 169.088 bits (427), Expect = 3.083e-47
Identity = 90/233 (38.63%), Postives = 129/233 (55.36%), Query Frame = 0
Query:   86 DARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNM--DKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK 316
            + R  GA   +G + L CKAGPDG A+GDCPFCH+V++VL    L Y ++P T E KP+WLV+ Y GKMP L H +E YT+S  I  YL +FF   + L+    + E+         G+F A A+Y+K+   + + D  L+  L   L ++D  L   +  F  G+  T  D  LAP+LYH++ G+  F   I       L+ YM ++F    FQ + YP + + WGW NAR 
Sbjct:   42 EVRQEGATPTEGGMILYCKAGPDGQAIGDCPFCHFVRIVLEELNLEYEVLPTTSETKPKWLVDHYEGKMPALRHRKECYTESSVIVDYLLFFFGKNKELSQISSSNEI-------VGGLFPAVAKYLKHTPDNDDTDLELRDNLKITLQQLDDHLVGKQ--FWNGDVFTQVDCKLAPQLYHLQCGIDAFHKQIDLAEYVHLSQYMTNLFARPSFQATVYPKEAVEWGWSNARN 265          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|219120379|ref|XP_002180929.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407645|gb|EEC47581.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 167.162 bits (422), Expect = 1.419e-46
Identity = 94/258 (36.43%), Postives = 148/258 (57.36%), Query Frame = 0
Query:   67 SSMSSSIALASARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNM--DKEQDPPLQAALVEELNKVDTLLQ--KTKGPFLA--GERITLDDMALAPKLYHIKVGVAHFKN--VIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK 316
             S  S++ +   R      + R  GA   +G + L  KA  DG  +GDCPF H+V++VL  KGL+Y L P T + KP WL E Y GK+P L H +E Y +S  I  YL++FFP  +P +++    E+ +E + A SG F + A+Y+K++    ++D  ++ +L   L +++  LQ     GP+L   GE++TL D +L+PKLYH++ G+  FK+  + +     A+  Y+  +   + FQ++ Y  DVI WGW N RK
Sbjct:   15 QSTKSALCMVQNRGL----EIRREGATPTEGGMTLYLKAAADGTLVGDCPFAHFVRLVLEEKGLQYELKPCTEDTKPAWLTEYYEGKLPALRHRKECYVESDVIADYLDFFFP--DP-SLKGGKKEM-DEAEDAISGFFPSVAKYLKHIPDGDDEDQEMKCSLESVLLRLEEHLQLENRTGPYLVGNGEKLTLLDCSLSPKLYHLRTGIEAFKDNAIDLAQKFPAVNEYLDSMLKRESFQKTVYDKDVIIWGWSNTRK 264          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|1210531023|dbj|GAX10124.1| (hypothetical protein FisN_3Lh316 [Fistulifera solaris])

HSP 1 Score: 167.162 bits (422), Expect = 1.516e-46
Identity = 89/233 (38.20%), Postives = 127/233 (54.51%), Query Frame = 0
Query:   86 DARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNM--DKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK 316
            + R  GA   +G + L CKAGPDG A+GDCPFCH+V++VL    L Y ++P T E KP+WLV+ Y GKMP L H +E YT+S  I  YL +FF   + ++    N            G+F A A+Y+K+   + + D  L+  L   L ++D  L   +  F  G+  T  D  LAP+LYH++ G+  F+  I       L  YM ++F    FQ + YP + + WGW NAR 
Sbjct:   44 EVRQEGATPTEGGMILYCKAGPDGQAIGDCPFCHFVRLVLEELNLEYEVLPTTSETKPKWLVDHYEGKMPALRHRKECYTESSVIVDYLLFFFGKNKEISQTSSN--------DIVGGLFPAVAKYLKHTPDNDDTDLELRDNLKIILQQLDDHLVGKQ--FWNGDIFTQVDCKLAPQLYHLQCGIDAFQKQIDLAEYDHLTLYMSNLFARPSFQATVYPKETVEWGWSNARN 266          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|1210526493|dbj|GAX14674.1| (chloride intracellular channel protein 2 [Fistulifera solaris])

HSP 1 Score: 163.31 bits (412), Expect = 1.324e-45
Identity = 92/243 (37.86%), Postives = 133/243 (54.73%), Query Frame = 0
Query:   77 SARSTTGF-GDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNM--DKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNARK 316
            S R+ TG+ G   G         + L CKAGPDG  +GDCPFCH V++VL    L Y LIP T E KP+WL++ + GKMP L H    YT+S  I  YL     G++ L+  + N       + A +G+F A A+Y+K+   + E+D  L+  L   L ++D  L      F  GE  T  D  +AP+LYH++ GVA F+  I       ++ YM+++FD   F+ ++Y  + + WGW NARK
Sbjct:    4 SGRTITGYSGSDNG---------MTLYCKAGPDGQTIGDCPFCHAVRLVLEELHLDYELIPATAETKPQWLLDHFEGKMPALRHGNMCYTESSVIIDYL----LGQDELSQANCN-------EAANAGLFPAIAKYLKHTPDNDEEDGKLRDDLKTILQRMDAHLDGK--TFWNGESFTQTDCKIAPQLYHLQCGVAAFQKDIDLNEYANVSRYMKNLFDRQSFRSTTYSAETVEWGWSNARK 224          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|291231084|ref|XP_002735493.1| (PREDICTED: chloride intracellular channel protein 5-like [Saccoglossus kowalevskii])

HSP 1 Score: 157.918 bits (398), Expect = 1.508e-43
Identity = 85/219 (38.81%), Postives = 122/219 (55.71%), Query Frame = 0
Query:   99 IELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVE-GYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPEL-AEEVKTATSG--VFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGN 313
            IEL  KAG DG +LGDCPF H +QM+L+ KGL Y+LIP+  + KP   ++    GK+P L HD     DS  I +YLE  FP           P+L A+ V    +G  +F  FA  +KN D   +  L+ AL+ E+ K++  L  + G +L G+ + L D  + PKLYH+KV   HFK+  IP  +  L  YM   F  ++F+ ++YP + I  GW +
Sbjct:    3 IELFVKAGTDGKSLGDCPFSHRIQMILQLKGLEYKLIPVNMKIKPRGFLDISPAGKVPVLTHDGGRMDDSTAIAEYLETTFP----------EPKLRADNVAADNAGDRLFHKFAAVLKNRDASAEVHLKNALLTEVRKLNNFLSNSPGVYLDGDTLKLPDCNILPKLYHLKVAAKHFKDFEIPDEMDVLKTYMATAFQTEVFKTTAYPEEEIINGWAD 211          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|224004102|ref|XP_002295702.1| (dehydroascorbate reductase and valine--tRNA ligase-like protein-like protein [Thalassiosira pseudonana CCMP1335] >gi|209585734|gb|ACI64419.1| dehydroascorbate reductase and valine--tRNA ligase-like protein-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 154.066 bits (388), Expect = 4.544e-41
Identity = 105/298 (35.23%), Postives = 149/298 (50.00%), Query Frame = 0
Query:   41 VAVRYITLADATPQSITSRIEGSHTRSSMSSSIALASARSTTGFGD-----------ARGRG-ARDEQGR------IELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDK--EQDPPLQAALVEELNKVDTLLQKT--KGPFLA--GERITLDDMALAPKLYHIKVGVAHFKN--VIIPPSLTALAAYMQHIFDMDIFQES-SYPPDVITWGW 311
            +A  ++TL   T QS++S+   +    S+S SI +     T                ARGRG  R E+G       + L  K   DG ++GDCPF H+V+MVL  K L Y L+P T E+KP+WL+E Y GKMP L H  E Y DS  I QYL++FF   +      E  E AE    A  G F + A+++K+     E+D   Q AL E+L  ++  L +    GP+L   GE  TL D ++APKLY + V +   K   + +     A+  Y   +F    FQ +  Y P+ + WGW
Sbjct:    5 LARYHLTLLGLTFQSLSSQAFIAPNTRSVSRSIIVGGESITNNINSRMTSSSPPLEMARGRGLERLEEGATPLPGGMTLYVKPAEDGKSVGDCPFAHFVRMVLHEKNLEYDLLPTTQENKPQWLLEDYDGKMPALRHRRECYVDSEVIAQYLDFFFQDPKLSVAGGETGEAAE----AVDGFFPSMAKFVKHSPNGDEEDKEKQEALEEKLQTLNDFLSRDGRTGPYLVGNGETFTLLDCSMAPKLYAMDVCLEKIKENPIDLKGKYPAVRKYCDDVFARPSFQSTVEYGPETVVWGW 298          
BLAST of EWM29073.1 vs. NCBI_GenBank
Match: gi|397609755|gb|EJK60500.1| (hypothetical protein THAOC_19132 [Thalassiosira oceanica])

HSP 1 Score: 153.68 bits (387), Expect = 2.053e-40
Identity = 102/255 (40.00%), Postives = 141/255 (55.29%), Query Frame = 0
Query:   65 TRSSMSSSIALASARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDK--EQDPPLQAALVEELNKVDTLLQKT--KGPFLA--GERITLDDMALAPKLYHIKVGVAHFKN--VIIPPSLTALAAYMQHIFDM-DIFQESSYPPDVITWG 310
            TR++  SS  L   R+  G  + R  GA    G + L  K   DG ++GDCPF H+V++VL  KGL Y L+P T E KP+WLV+ YGGKMP L H +E Y DS  I QYL++FF  E  L+V     E  ++ + A  G F A A+++K+     E+D   QAAL E+L+ ++  L K    GP+L   GE  TL D ++APKLY + V +   K   V       AL  YM  +F+   +   S Y P+ +TWG
Sbjct:   25 TRAAHVSSSGLDMIRNR-GL-ETREEGATPLPGGMTLYVKPAADGKSVGDCPFAHFVRIVLAEKGLEYDLVPSTQEAKPQWLVDDYGGKMPALRHRKECYVDSEVIAQYLDFFFK-EPELSVS----EGTDDAEAAIDGFFPAMAKFIKHSPNGDEEDKEKQAALEEKLSVLEAHLGKVGRTGPYLVGNGEAFTLLDASMAPKLYALDVCLKEIKGNPVDFDGKYPALRKYMDEVFERPSVKSTSEYGPETVTWG 272          
The following BLAST results are available for this feature:
BLAST of EWM29073.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111592|gb|EWM29073.1|0.000e+0100.00dehydroascorbate reductase [Nannochloropsis gadita... [more]
gi|299116565|emb|CBN74753.1|5.154e-8142.25GSH-dependent dehydroascorbate reductase, monomeri... [more]
gi|1210531456|dbj|GAX09812.1|1.078e-4940.45hypothetical protein FisN_11Lh214 [Fistulifera sol... [more]
gi|1210525011|dbj|GAX16203.1|3.083e-4738.63chloride intracellular channel protein 2 [Fistulif... [more]
gi|219120379|ref|XP_002180929.1|1.419e-4636.43predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210531023|dbj|GAX10124.1|1.516e-4638.20hypothetical protein FisN_3Lh316 [Fistulifera sola... [more]
gi|1210526493|dbj|GAX14674.1|1.324e-4537.86chloride intracellular channel protein 2 [Fistulif... [more]
gi|291231084|ref|XP_002735493.1|1.508e-4338.81PREDICTED: chloride intracellular channel protein ... [more]
gi|224004102|ref|XP_002295702.1|4.544e-4135.23dehydroascorbate reductase and valine--tRNA ligase... [more]
gi|397609755|gb|EJK60500.1|2.053e-4040.00hypothetical protein THAOC_19132 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1616rna1616Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications