rna1616, rna1616 (mRNA) Nannochloropsis gaditana

Overview
Namerna1616
Unique Namerna1616
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002457.1:1067738..1068688 +

Link to JBrowse

Properties
Property NameValue
Productdehydroascorbate reductase
Orig transcript idgnl|cribi|Naga_100024g18.4331.mrna
Orig protein idgnl|cribi|Naga_100024g18.4331
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1067738..1068688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100024g18gene1553Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1616rna1616-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29073.1cds1612Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1616 ID=rna1616|Name=rna1616|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGAGTCGTGGCCACACTTTGTCTTTCCAAACATCTAGTAAGATCAATTC
ATGCAGCAGGGATGTAATTTTGTCGTGGGCGATAAATGCCTCTACGATGA
ACTCGCCGTCGTGGCTCCACGTAGATGATCCGACCTCCTGCAAAGTAAAA
ACACGCAGGTTACTTACCAACTCGTCCGCTTCACGAACTGATAGAAGAGC
GGAGATTGTGACAGGGGTATCCTGCTCTTGTATCGGTAAGCTAGTACCGA
TTGTGGCCTGGACCGTTCCTCCGGATTTGCTGCTGCTTTCCCTATGTGAC
TCACGACGCGGACAGGAATTGAGAGGACAATTGCGTGGAAAGTTCTTCGA
TCACAACCATAGTCTATTCGAGGCTGTATTGAATGTAAGAAAAATGAAGA
AGAAAAAAATGGGAAAGAAAAACATGGGCCACGTCGCCTTTGGTATCAGA
AGCGTGACGGGCGATTTCCGGCCAGGTCTATGGCAGTAG
back to top

protein sequence of rna1616

>rna1616-protein ID=rna1616-protein|Name=rna1616|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MIMRSLVQVSSISLLLLVVRTKAFLRPILPRYSSTLRASSVAVRYITLAD
ATPQSITSRIEGSHTRSSMSSSIALASARSTTGFGDARGRGARDEQGRIE
LLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGY
GGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTA
TSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGER
ITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQES
SYPPDVITWGWGNARK
back to top

mRNA from alignment at CM002457.1:1067738..1068688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1616 ID=rna1616|Name=rna1616|organism=Nannochloropsis gaditana|type=mRNA|length=951bp|location=Sequence derived from alignment at CM002457.1:1067738..1068688+ (Nannochloropsis gaditana)
ATGATTATGCGCTCATTAGTACAGGTATCGTCAATTTCATTGCTGTTGCT
GGTGGTGCGCACGAAAGCCTTCCTCCGGCCTATCTTGCCAAGGTACAGCA
GCACGCTGAGAGCCTCGTCTGTCGCTGTGCGATATATCACTTTAGCCGAC
GCAACGCCACAGAGCATCACGAGCAGAATAGAAGGTAGTCATACTCGGAG
CTCGATGTCGTCTTCGATTGCCCTGGCATCCGCCCGCTCTACGACGGGTT
TTGGAGACGCTCGGGGACGGGGCGCGCGCGATGAGCAAGGCCGTATTGAG
CTCTTGTGCAAGGCAGGGCCTGACGGAGCAGCTTTGGGCGACTGTCCCTT
CTGCCACTATGTCCAGATGGTACTCCGCTACAAAGGTTTGCGTTACAGGC
TGATTCCCTTGACGCCTGAGGACAAACCCGAATGGCTTGTGGAGGGAtat
ggagggaaaatgcCTTGCCTGGTTCATGACGAAGAGGCCTACACCGATTC
CGGTACTATCACGCAATACCTTGAATATTTTTTCCCTGGTGAGGAACCCT
TGACGGTGGAAGATGAAAATCCAGAACTGGCTGAAGAGGTCAAGACCGCG
ACCTCGGGGGTCTTTGGTGCGTTCGCGCGGTACATGAAGAATATGGACAA
GGAGCAAGATCCACCTCTGCAAGCTGCCCTAGTCGAAGAATTGAATAAAG
TCGATACGTTGCTGCAGAAAACTAAAGGGCCCTTTCTTGCAGGGGAGCGC
ATCACCCTCGATGACATGGCATTGGCACCCAAACTTTATCACATCAAGGT
AGGCGTGGCTCATTTTAAGAACGTCATTATCCCGCCGAGTCTGACTGCAT
TAGCGGCGTATATGCAACACATCTTTGATATGGACATATTCCAGGAGAGC
TCATACCCCCCTGATGTAATCACTTGGGGATGGGGTAATGCACGCAAGTG
A
back to top

Coding sequence (CDS) from alignment at CM002457.1:1067738..1068688+

>rna1616 ID=rna1616|Name=rna1616|organism=Nannochloropsis gaditana|type=CDS|length=951bp|location=Sequence derived from alignment at CM002457.1:1067738..1068688+ (Nannochloropsis gaditana)
ATGATTATGCGCTCATTAGTACAGGTATCGTCAATTTCATTGCTGTTGCT
GGTGGTGCGCACGAAAGCCTTCCTCCGGCCTATCTTGCCAAGGTACAGCA
GCACGCTGAGAGCCTCGTCTGTCGCTGTGCGATATATCACTTTAGCCGAC
GCAACGCCACAGAGCATCACGAGCAGAATAGAAGGTAGTCATACTCGGAG
CTCGATGTCGTCTTCGATTGCCCTGGCATCCGCCCGCTCTACGACGGGTT
TTGGAGACGCTCGGGGACGGGGCGCGCGCGATGAGCAAGGCCGTATTGAG
CTCTTGTGCAAGGCAGGGCCTGACGGAGCAGCTTTGGGCGACTGTCCCTT
CTGCCACTATGTCCAGATGGTACTCCGCTACAAAGGTTTGCGTTACAGGC
TGATTCCCTTGACGCCTGAGGACAAACCCGAATGGCTTGTGGAGGGAtat
ggagggaaaatgcCTTGCCTGGTTCATGACGAAGAGGCCTACACCGATTC
CGGTACTATCACGCAATACCTTGAATATTTTTTCCCTGGTGAGGAACCCT
TGACGGTGGAAGATGAAAATCCAGAACTGGCTGAAGAGGTCAAGACCGCG
ACCTCGGGGGTCTTTGGTGCGTTCGCGCGGTACATGAAGAATATGGACAA
GGAGCAAGATCCACCTCTGCAAGCTGCCCTAGTCGAAGAATTGAATAAAG
TCGATACGTTGCTGCAGAAAACTAAAGGGCCCTTTCTTGCAGGGGAGCGC
ATCACCCTCGATGACATGGCATTGGCACCCAAACTTTATCACATCAAGGT
AGGCGTGGCTCATTTTAAGAACGTCATTATCCCGCCGAGTCTGACTGCAT
TAGCGGCGTATATGCAACACATCTTTGATATGGACATATTCCAGGAGAGC
TCATACCCCCCTGATGTAATCACTTGGGGATGGGGTAATGCACGCAAGTG
A
back to top
Synonyms
Publications