rna1540, rna1540 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1540
Unique Name	rna1540
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2462
Alignment location	CM002457.1:892256..895381 +

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans isomerase-like protein
Orig transcript id	gnl\|cribi\|Naga_100007g30.6488.mrna
Orig protein id	gnl\|cribi\|Naga_100007g30.6488
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:892256..895381 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g30	gene1484	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1540	rna1540-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29161.1	cds1537	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:892256..895381+
coding sequence from alignment at CM002457.1:892256..895381+

mRNA sequence

>rna1540 ID=rna1540|Name=rna1540|organism=Nannochloropsis gaditana|type=mRNA|length=2462bp
GCTCAATTAAGGACGTATGAATCGAACAAATTTCCTCGCCACGCCTTTTC
AACATTTATCGTTGCTCACATCTGGTCACCACATATCATTTACAACATGT
TCAGGCACAATAGCAATTTCTGGGAAAGGGGAGGGCGTGGGGCGGGAGGA
GGAAACTAAATAGCATAGGAGTGAGACAAGGAAGGAAATTATGGACATCT
ACTATCCAAAAGACAATGCAGTATCACACGGCAAGGTGCACGAGCTACTC
GACGCGGAGGCCATGAAACGCGGAGAGCCTCTGGCAGAGGAATCTATTCG
ATGGCTCTTGGAGCTGCATGGCGAAATGTTTCTGATCGAGCAGCACTACA
GCATACGAACACGGACACGACGGCTAGCTTTGAATGGAACGCCTGTAGCG
GAATTTTCCGATGTTGAGCCGATGGTCGATTTCCAGCTCGGGACGACCAA
CATTCGAATGTCTTTCACTGTCCGCGGGAAGGGAATCGTCTATGAGCTCC
TCGTCAATGGCGTCCGTTTCGAGGATTTGACGCAGGCCTTACCTTCTCCA
ATCGCCTCGTGTGCGGAAGGTTCGGGAATGACGTTTGGTGAGCCCCTCAC
ACACCATCGACTGGGCCTTCTGCCGCCACACTTGATCCAGTTTCAACCGC
AACCGGCGATGGACATGATTGCAATGGCGCATGTTGAATCGTCTTTAAGT
TCTCCTTACAGCCATCCCCGTCATCGACGCAACTCGACCTTCGGCTCGAT
CATAAGTCTGCTGGAAGAGACGACAGCGGTCTTACCCGCTCTCGACTCCA
GCCCAAGCTTCACGGCCCTTCCTGGCCGTCATTCGAGGCATCCCTCGACA
GCATCTCGCCACCGGCATTTTAACCTTGAAGTTAACGCCATACAGGACGA
TGTTTATTCGGCTTTAATGTCAGGAACGGAGCTTATCGGCAGGGAAAGAG
CTGGAAGAGGAACGCAGTCCATGGAGGGCTTGAAGCTAGCCGAGACAGAG
AGCGGCGCCTTCTGTGAAAATACAACCTCCGTCGCCACTACGCTATCTTC
CATGGCCTCCTGGAAAAATGCAGCGGTTACGAATCCAAGCGAAGGCATGA
TAGGTTTTGGCGTTGCCTTCACGACGGCCAGCGGCATGGACACTCGCCTC
CTCTCACATGAGCAACAGCCGATTTCAAAAGAGGCAGCACGCCAGTGTTC
GCGACAGGACCCTGTAGCGATCACGTCGGCGGAGTATCATGGACAATGTG
AGAGCAGTGCGGTCGCGCACGTCGAGTGTCCTACCATGCCATTGAAGGAA
GATGAAGGGCCTCGGCAGGCGCAAGCGCACCGTGGAAGTGGAAATATTGG
CGCGCTTCTCCCTCACGGGGCGGGTATTTTGCAGCCACATTCGATAATGC
AAGCACATGAAGGAGTGGTGGACCTCCCGTCTCGCCTCTCGGATCCGAAG
ACAGACGATAATCGTGCGGTTGCACGCAGGCGCCGAGAGCCAAGCGACTG
CCAGGGTATTCAGCAGCAACAACAACTTCAGCTCGAGAGAGAGCAGCAGC
CCTTTCATCCGTTAGCATCTTTTGCGAGCAGCTCAAATCTGCAATGCCGG
GATGGCGCCAAGGCAGCAGAGGATGCCGAGCCCCTCCGAAGACCACGACT
GAAAATGGCCAAGACCTCTCCGACTGTCCGTCCTGCACGCCCCACCGCAC
ACATACGACGAAGGAGCCATGGCAGTATTGATGACCTTAAATCAGTTGGA
GACAGGGCAATGATGGCGGAGCTTGCGAGCATTCCCGTGGAAGAGGAAGT
CGAAGCAGTCAAGGAGGAGTATGCTCTATTCCACGGCGGTCATGACAGCG
CCAACAATGGAAAAGGACAGTCTTTTGCTCAAGAACGGCGATTCCAACAC
CTTAAAGAGCCTCCTACCCTGCTGAGGAGTCTTTCGGCGAGCGATGTCAT
GGAGCGCCCCCCGAACCTCAAGATTCTGGTCCCCGCCCCCCCCACCTCCA
TCGCTCGGGGGGGTCTGGCGGGTCGGAACCTGAAGTCGCTTGGTGTAGCG
CTCTCGCAGCCACGATGATACTATACGGAAGAGATATTATGAAACGTGTT
GAAATACAATCTAAGGCTTTATTTGGTCTGCCGGCCGTACTCTAGATGGT
TTCAATTTCGACAAGATCGTCCTACGGCAGCTCGCAGCCCCAATTTTAGA
GACCTACCAATAGACATAGAAGGAATAGAGTGAGAAGCGATAAGCAAGGA
TGAGTCTTGCCTGCAATAAGAGATGAAACCAACAATTTTATCATCATGAG
AAACTCCGAGAGGGCAATTTTCTGCGATGGACTTACAAGCATCCTGACCA
GTCTTGATTCGGAACTCCTCCCTAGCTTACGTCAAAATCCTTACCTCTTT
CTTACATGTCCAAGCAAGCCTTGGCCTGATAATTTTCGTCCCTGAACTAA
ATCACATGTACC

protein sequence of rna1540

>rna1540-protein ID=rna1540-protein|Name=rna1540|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp
MSVMLETTLGELVVDLYCDKCPLAAKNFLKLCKTKYYNDVLVYNVQQNFM
IQTGDPSGTGRGGTSIYGMLYGEQAKYFEDEIRLPQLKHSRPGLVCMASS
GENQNTSQFYITMRGEDMEFLDGKHTIFGEVAEGLDTVLKEINELYCDTD
GRPYRDVRILHTYVLDDPFDDPKGIEDLIPDASPARGRPEAESVNPRLID
LEDEEDGLTAEALEERIREVEANKRAVVLEMIGDLPDAEIKPPENVLFVC
KLNPITTDEDLEIIFSRFGTGVKAEICRDPVTGDSLNYAFVEFDDVESCE
EAYKKMNNALVDDRRIKVDFSQSVAKQWNRYTMRPRGSTKIKSRGAGFQE
RSPDASTLLSASSAARAGNGGGRNGKGSGLESGPRTSVPAPKSRWEESAA
GKASHGAVEVSNRKRPASPTGYQEGRGRDSGGEAGGREGRKGRREAQGER
SQRSRSRSLERIRKQIRRSGSPSRERRERRDGLRERDWRDRRERSRDRSQ
SRELRRRR

mRNA from alignment at CM002457.1:892256..895381+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1540 ID=rna1540|Name=rna1540|organism=Nannochloropsis gaditana|type=mRNA|length=3126bp|location=Sequence derived from alignment at CM002457.1:892256..895381+ (Nannochloropsis gaditana)
ACATGATTCTGCCTGGATAATACAGGGAAAATGCTGATACAAACCCGTGT
TTTCAAAAATTCAAATCGGAAGATGCTTCAACAAAGTCGACTGTGTTTAT
TACTCCTTGCCTTCACCTTTCGTTTCAGGTCTTATAAACACAGGTCTTGC
TGTTCAAATTTTGGAGTAAATTAGCTATATAAAATAAAGTATAAGCAGAT
TGACAAGCATTCTGCTGGGTGGCCTTTTGGAATATTGGTTTCGTGCACTG
CATGTAGATTTCAAAAGGCAAGCACAAGGTTCTCTCATCTTGCGAAGGCG
ACGCCTGGGGTGATCAAAGGAAGTAAAAATTGCATGACAAGTTCAGGGAT
AATCAAGCTGAGATATATTCAAAATTTGCATACTTTCAATTAGCTACCTT
ATGTGATGTCTCCACTATTCATGTCCTGGGTATTTCTATCGACCGCTTGT
GCCATCAGGTTAGAGCAATTATAAAATTACGACGCGAAACTTGACGAACA
CAAAGGAAGTAAATCGAAGACATTTTCTGTAGAAGCATGGTGCACATATG
ATCTCAACTTTTGAAGGGGATGCACATCATCCATGGACTTTCAGAAATGG
ACATCTCTACTACCAGCATCGCGGTTCAAGGTATCGATTAAGAACTTGTA
CCAATACTTGCCCAATTTTCACATGTGCTCCTGGGACACTCTTCAACAAG
TTTAGAAGGGCTAAAGTTTAATGAGAATTttaagggagagaaaaagaagc
tgaCTTAATGTGAGAGTAAATATCATGGTCTCTTCAATGCGGCTTCAAAC
AATTAAGGAGGTACGAGTGTGCTAGCGATGAGCAAGATAAAAACTGTTTT
CAGAAGGGATTTACAAATTCTATTTCAGAAATGCTTTACTTTCAAACAAT
AGAGATGACGATTTTTACCAAGGTAATTGATCTAAAATGTGGGACATTGG
AGACGCAAAGAAAGTGAGGTACCGAATCAGGAGGGGTGATGCCTATCGAT
GGTGACTCTTGAGAGCTTCAACACATTGAGCATCAAGTATAGTCATTTGA
CGAGTTTCATATAAAAATATGATTTCCCTTTTACAGACCTGAATGCTGTG
AGCGGCAAGAAGGCCGTTGCCGTGGCAACTGAGCGGGCCGGAAATGCCCC
CGTAAAAACAATATAGTTCTTTGAGCGAATAAAACATAAAAAGATATCGT
CACGAGGATTTATTCATCAGACGATCCCTTTTCTAAGTTGCTCAGAGGCA
AATTCATGTTAGTCGAGCGCAACCCCACATCAGCTTTCCGCTGCTGTCGC
ACTGCATTTGTTCTGTTATCACAATGCCCGTTGAACCTTTCGATTTCAGA
ATCGTTTGTTCAGAAGATCATTAATATGCGCAAACGTTCGTAGTTTGTTT
TTGTGTAGCAATCGAGCAAAAAAATATtccagagaaggagggaaaaaagc
accgtggggaggaggttgaaaacACCTGTAGCTACATTTTCAATTCATCT
CGACTTACGCGTTGAGGTATTTTTTTTGCTCAGGAAGCGATGTCCGTAAT
GCTGGAAACGACGTTGGGGGAGTTAGTGGTAGACCTGTACTGCGACAAGT
GCCCGCTGGCTGCCAAAAATTTCTTGAAGCTCTGCAAGACGAAGTACTAC
AACGATGTGCTGGTTTACAATGTACAACAGAATTTTATGATTCAGACAGG
AGACCCAAGTGGTACAGGTCGTGGGGGCACATCTATATACGGCATGCTGT
ACGGGGAGCAGGCCAAATATTTTGAGGACGAAATCCGCCTACCCCAATTA
AAGCACAGCCGTCCAGGCTTGGTATGCATGGCCTCAAGCGGGGAAAACCA
GAACACTTCCCAGTTTTACATCACGATGCGCGGTGAGGATATGGAGTTCT
TGGACGGAAAGCACACAATATTCGGAGAAGTGGCGGAAGGGCTTGACACC
GTCTTGAAAGAGATAAATGAATTGTACTGCGATACGGACGGCCGCCCCTA
CCGTGACGTGCGCATACTCCACACCTACGTCCTCGATGATCCTTTCGACG
ACCCAAAGGGCATTGAAGACCTTATTCCAGACGCATCTCCCGCTCGAGGG
CGGCCGGAAGCGGAAAGCGTGAACCCTCGTTTGATCGacctggaggacga
ggaggatgggttGACTGctgaggccttggaggagcgtATccgcgaggtgg
aggcaaaTAAGAGGGCTGTGGTCCTTGAAATGATTGGCGACTTGCCAGAT
GCAGAAATAAAGCCTCCAGAGAACGTCTTGTTTGTCTGTAAGCTGAATCC
TATCACGACGGACGAGGATTTAGAGATCATTTTCAGTCGTTTCGGGACTG
GCGTCAAAGCAGAAATCTGCCGCGACCCGGTGACAGGAGACTCACTAAAC
TACGCCTTCGTCGAATTCGACGACGTCGAGAGCTGCGAAGAAGCCTATAA
GAAGATGAATAATGCCCTCGTGGACGACAGGCGCATCAAGGTGGATTTCT
CTCAGTCCGTGGCGAAACAGTGGAACCGTTACACCATGCGCCCGCGCGGC
AGCACGAAGATCAAGAGCCGAGGGGCAGGCTTCCAGGAGCGCTCGCCCGA
TGCCTCAACACtcctctctgcttcctcGGCTGCCCGCGCTGGTaatgggg
ggggaaggaacgggAAGGGCTCTGGCCTTGAATCTGGTCCACGTACGTCT
GTGCCAGCTCCGAAGAGCCGTTGGGAGGAAAGTGCGGCTGGCAAGGCTAG
TCACGGGGCTGTAGAAGTAAGCAACAGGAAACGGCCCGCCTCTCCGACGG
GGTATCAGGAGGGCAGAGGTCGGGActcggggggagaggcgggggggcgg
gagggccgAAAAGGGAGGCGTGAAGCTCAAGGAGAGAGGTCTCAACGCTC
ACGGTCACGCAGTCTGGAGCGGATTCGGAAACAAATTCGGCGATCGGGCT
CACCATCGCGGGAGCGACgcgaaaggagggacggatTGCGCGAAAGGGAC
TGGCGGGACcggagagagaggagtcGAGATCGATCGCAGTCTAGGGAACT
CCGCAGGCGCAGATAGTGCGTACTGCGGAATACCAATGCTAGCCAATCTA
ACGAAAAATGCCATGGTACCTGTATT

Coding sequence (CDS) from alignment at CM002457.1:892256..895381+

>rna1540 ID=rna1540|Name=rna1540|organism=Nannochloropsis gaditana|type=CDS|length=1527bp|location=Sequence derived from alignment at CM002457.1:892256..895381+ (Nannochloropsis gaditana)
ATGTCCGTAATGCTGGAAACGACGTTGGGGGAGTTAGTGGTAGACCTGTA
CTGCGACAAGTGCCCGCTGGCTGCCAAAAATTTCTTGAAGCTCTGCAAGA
CGAAGTACTACAACGATGTGCTGGTTTACAATGTACAACAGAATTTTATG
ATTCAGACAGGAGACCCAAGTGGTACAGGTCGTGGGGGCACATCTATATA
CGGCATGCTGTACGGGGAGCAGGCCAAATATTTTGAGGACGAAATCCGCC
TACCCCAATTAAAGCACAGCCGTCCAGGCTTGGTATGCATGGCCTCAAGC
GGGGAAAACCAGAACACTTCCCAGTTTTACATCACGATGCGCGGTGAGGA
TATGGAGTTCTTGGACGGAAAGCACACAATATTCGGAGAAGTGGCGGAAG
GGCTTGACACCGTCTTGAAAGAGATAAATGAATTGTACTGCGATACGGAC
GGCCGCCCCTACCGTGACGTGCGCATACTCCACACCTACGTCCTCGATGA
TCCTTTCGACGACCCAAAGGGCATTGAAGACCTTATTCCAGACGCATCTC
CCGCTCGAGGGCGGCCGGAAGCGGAAAGCGTGAACCCTCGTTTGATCGac
ctggaggacgaggaggatgggttGACTGctgaggccttggaggagcgtAT
ccgcgaggtggaggcaaaTAAGAGGGCTGTGGTCCTTGAAATGATTGGCG
ACTTGCCAGATGCAGAAATAAAGCCTCCAGAGAACGTCTTGTTTGTCTGT
AAGCTGAATCCTATCACGACGGACGAGGATTTAGAGATCATTTTCAGTCG
TTTCGGGACTGGCGTCAAAGCAGAAATCTGCCGCGACCCGGTGACAGGAG
ACTCACTAAACTACGCCTTCGTCGAATTCGACGACGTCGAGAGCTGCGAA
GAAGCCTATAAGAAGATGAATAATGCCCTCGTGGACGACAGGCGCATCAA
GGTGGATTTCTCTCAGTCCGTGGCGAAACAGTGGAACCGTTACACCATGC
GCCCGCGCGGCAGCACGAAGATCAAGAGCCGAGGGGCAGGCTTCCAGGAG
CGCTCGCCCGATGCCTCAACACtcctctctgcttcctcGGCTGCCCGCGC
TGGTaatggggggggaaggaacgggAAGGGCTCTGGCCTTGAATCTGGTC
CACGTACGTCTGTGCCAGCTCCGAAGAGCCGTTGGGAGGAAAGTGCGGCT
GGCAAGGCTAGTCACGGGGCTGTAGAAGTAAGCAACAGGAAACGGCCCGC
CTCTCCGACGGGGTATCAGGAGGGCAGAGGTCGGGActcggggggagagg
cgggggggcgggagggccgAAAAGGGAGGCGTGAAGCTCAAGGAGAGAGG
TCTCAACGCTCACGGTCACGCAGTCTGGAGCGGATTCGGAAACAAATTCG
GCGATCGGGCTCACCATCGCGGGAGCGACgcgaaaggagggacggatTGC
GCGAAAGGGACTGGCGGGACcggagagagaggagtcGAGATCGATCGCAG
TCTAGGGAACTCCGCAGGCGCAGATAG

Synonyms

Publications