EWM29160.1, cds1507 (CDS) Nannochloropsis gaditana

Overview
NameEWM29160.1
Unique Namecds1507
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:815987..816586 +

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Properties
Property NameValue
Protein idEWM29160.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g65.6487.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:815987..816586 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29160.1 vs. NCBI_GenBank
Match: gi|585111680|gb|EWM29160.1| (hypothetical protein Naga_100007g65 [Nannochloropsis gaditana])

HSP 1 Score: 410.223 bits (1053), Expect = 5.257e-145
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 
Query:    1 MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLDSWNLGTDEQVKKRSKKKEGRKRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQPSIHTSVQLHPQPVIGKCFKDIVFS 199
            MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLDSWNLGTDEQVKKRSKKKEGRKRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQPSIHTSVQLHPQPVIGKCFKDIVFS
Sbjct:    1 MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLDSWNLGTDEQVKKRSKKKEGRKRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQPSIHTSVQLHPQPVIGKCFKDIVFS 199
[Close]
BLAST of EWM29160.1 vs. NCBI_GenBank
Match: gi|585111679|gb|EWM29159.1| (hypothetical protein Naga_100007g65 [Nannochloropsis gaditana])

HSP 1 Score: 392.504 bits (1007), Expect = 4.653e-136
Identity = 190/195 (97.44%), Postives = 191/195 (97.95%), Query Frame = 0 
Query:    1 MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLDSWNLGTDEQVKKRSKKKEGRKRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQPSIHTSVQLHPQPVIGKCFKD 195
            MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLDSWNLGTDEQVKKRSKKKEGRKRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQPSIHTSVQLHPQPVI    +D
Sbjct:    1 MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLDSWNLGTDEQVKKRSKKKEGRKRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQPSIHTSVQLHPQPVIEGVNED 195
The following BLAST results are available for this feature:
BLAST of EWM29160.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111680|gb|EWM29160.1|5.257e-145100.00hypothetical protein Naga_100007g65 [Nannochlorops... [more]
gi|585111679|gb|EWM29159.1|4.653e-13697.44hypothetical protein Naga_100007g65 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1510rna1510Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications