rna1510, rna1510 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1510
Unique Name	rna1510
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1680
Alignment location	CM002457.1:813187..817549 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g65.6487.mrna
Orig protein id	gnl\|cribi\|Naga_100007g65.6487
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:813187..817549 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g65	gene1457	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1510	rna1510-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29160.1	cds1507	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:813187..817549+
coding sequence from alignment at CM002457.1:813187..817549+

mRNA sequence

>rna1510 ID=rna1510|Name=rna1510|organism=Nannochloropsis gaditana|type=mRNA|length=1680bp
ACGAGCTCTCTCACTCCAACATGTCGTGCCATCTTTCTCGCATCTCGCCC
TGCTGCCTCTACTTCCACCAGGTCATCATATCAAAGCACACGCCGTTTAA
AAGATCCCCCTTCTACACCAACTCATCAGCCTTAGACCCGGACTCCTAGT
ATGGTTCGCACGCGCAGCCGATCCCCTGAACAACCTGTCCCGGCCGCGGT
CTTCCCAGTCGCAGCGGCCGCCACGCCAGCGGAGGACAGGCAATGCTACG
ATGCGAACAGGAGTGCCTGGAATAGCAGCCACAGCAACAATAGCAGCTGC
GATTGCAATCGTAGTACAAATCATAGCAGCCATGACAGCAGCCATGCACC
ACCCTCACGGCCCTTGACTCCAACATTTTTCGACGCGGTAGCTTCTCCAG
CACGAGGGGAGATGCTTACCCTGGGGGATTTGGAATGTGGTGTGTGTCTT
GGCCTGCTATGTGAAGCGGTAACAACCCCTTGTGGGCATAGTCTCTGTCG
ACTTTGCTTGGTCCGGGCGCTGCAACGTCAGACGAAGTGTCCTGTCTGCC
GTGCCGTTTGTATGATAAACGCTGAGGACCATGCCGAGACTCGACTTCTG
ACGCGACTGGCGAAGCGAGCGTTTCCCGCCCTGTACGAGCAGCGACTGGA
AGAAACCAGACAGGAACGAGAGGCATTGAAGCTCTTGCTGCCCATCTTTT
TCTATAACCTCCCCATCTTTCCCGGCGAGGCCCTGCGCCTGCACCTGTTC
GAGCCCCGGTACCGGCTCATGATGCAGCGCATCGTGAATGGCAGCCGGCG
ATTCGCCTATGTGCCCAATTACTCTAACTATCGCGCCAAAGCTGGTGATA
TTGCGCTGATAGCAGAATTGAAGGAGGTGAGATTCATGCGCGACGGACGA
AGCGAATTGGAGGCACGGATTGCGGGACGCTTCACGATCGCGGAGGATCC
TTACGTGGAGGATGGGACCGGGGGCTTGAGCTACTGTCGGCTCAAGGAAT
TGCGGGACGAGTCCCCAAAATCTGCGGAGGCCAGTCAGGCACTGCGGCAG
GCAAGCGAAAAAGCGCGAGAAATGGCTCACGCGATTTTTCTTGAGCGACG
TGACATCAAAGCCGTCGTCGTGGACCGGTATGGGGAGATGCCGGGCCCGC
AGACACCGGAGGCCCTCTCTCTTTGGATTGCGGCTGTGCTTCCAACCGAG
AATCGCCAAATCAAACACGACCTGCTTGTGAGCACAGACACCTCCCACCG
CCTTGAGGTGTGTATTTCCAAACTACAGGCTTTGCGGGGGGCTGGCATGG
GCAAATCATCTTGAGAATGGGATTTCGGAACGAAGAAGCATGCCACACCA
AGAAAATGGACCATCATAAAGACATACAGTCAAAGCATGGGTGCCCTCGC
TTCCACGGACGGCACCGTCAACATCACCCGTCATTTTCCTCGTCCTTCTC
ATCTTTAATGTGCAGAGTCATCCTGAATAGTAGACGTGAAGAGCGGTTAA
AGCGTCTTAAGAGTCCTGCGGACGAGCAGTGATACGAGATGCAAGTCAAC
AAGGGAAACCCAGAAAGCAATCGAGGACCACAAACGATTTGCTAAAAATG
AGGACACGCTTGCCGATATCTTTGGAGGCGTGTTTGATTTTGTTTTTTTC
CAAGAAAAATAATGTTGCTGCCTGATTGCA

protein sequence of rna1510

>rna1510-protein ID=rna1510-protein|Name=rna1510|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTF
HARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAAR
TRDRKHDPPLEDIVRDLDSWNLGTDEQVKKRSKKKEGRKRRDKDRADTSA
YRNNSKPSGHQLPGVIPPLSPSDQPSIHTSVQLHPQPVIGKCFKDIVFS

mRNA from alignment at CM002457.1:813187..817549+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1510 ID=rna1510|Name=rna1510|organism=Nannochloropsis gaditana|type=mRNA|length=4363bp|location=Sequence derived from alignment at CM002457.1:813187..817549+ (Nannochloropsis gaditana)
ACAGAGGCGCAGAGTTGCCATTTGGGGTGCATCGAGGGGAAATTgcgcgg
agggagtgggggagaaCGACGTTTGTGCGATTTCACGCGATGTGGTCCAC
TTCTGACGTGCAGCTACGTTTCTTCCCCGCGTCGGCAAATAATATGTTCT
GCATTTTATGCATGGGGTCTCACGCTCACACAATCATCTTGTCTGGGTGG
ATACGTGGCGTGGCAGAGGAATGAGTACGTGGTCCTGGCGATTCAAGGTT
CGACAGGTCGCCCCCTTTGAAATCTACTTTATGACAGAAAAGTATGACAG
AACAGGCAGCTAATTAGGTGCCCCGGAGAGGTTTAATAATATATGGTGAT
GTGCCCCAGCGAGATGTAATAATACATGGTGATGTGCCCCAGCGAGATGA
AAGAAGTAGCATAAAGGTAAAAGAAGACATGTCTTATTGCAGGAGGTTTC
TTGTCACAAGATTTACTGAAAACGTACAATAATGTGCATCGCTTACTTGT
GTTTGTACGAGGAGTGTCCGAAGCTGTAGACTTGTAAGCGTACAAGGCAC
ATTGAGGTAGAGCGCCCCATCCTATCTGAGCATTCATCTCAGAATTGCGG
TCGTTGTTTTCCTGAGGTATGTGCTAGGGGAAGTGAAACCCTACCCCTTC
TGTGTGGtgcgccctgcctccctagTACGCCAATCTAGTTCTCGGAGGTC
ATAGTCTAGGACTCTTGTCGTCGGCAGCCTGTACGCCTTTTTCCACTTTC
TCATCATACTCAGGTTTTTCGACAGCTTGTCCCTTACGACGACCAAAATT
CCTCGTCTCGGGAAAGGCATATGCAAAATTGGCACGGTCATCTTCGCCTG
CTTTATCTGCCCTGACCGGGGGATAAGGCATGGGATTTGAAGGACACGAT
CTTGTTATAGCCGATGCATAGGCCTCACGGGTGTGTCGCATGTAAAGTTC
TTCTTGCAAAGCCTCCAACCACAGGCCAAGAGCGTCAACCAGAGGACCGA
TAGCTCTCTCGTTCATGTGCACTCCGTCATTGTGCAGCGCGAGGCCGCGC
GCGGCAGAGACTGAGTCCCACTTTAAGACAGACCCACTGACCAGGCTGAC
CCCGCTGTTGAAGCACATGTTGAAGAAATCGGGTTCGAATGCCTTTCGCG
GCTTGTCGGCTATTACCTCCTCCAAGTGCCGCTTCATATGCATGTTGAAG
TCAAGACAATGCAGGcggcgtcgagggcgaggaggcccCGATGAGGTTAG
AGAGGAGCGATGATGGCCTTGCCGAGCTCGCCAATATCGATGACCCTGCT
CGTGCTGCCAGTCGTCGGCGTCTCTTTCCTCGGTCTTGCCCCCAGGCCAG
CATGTCTTTGGAAGCTGGGAGCTGGACAAAGCcggcggaagaagaaccCC
TGCGCCGGTAGTCACCTCCATTCGTCCATCTgcaccctttttttcttgtg
TGACGAGATTCTCgacccccttctcccttcgcttGTGCGTTATTCGCCGC
ACTGTGGCCCGAATGTCGTCACATACGCTGTCAACCAGCTTGTTCTCGAG
GGAGTCGGGGCACTCGGCAATCATCGGGGGAGTCACGCAGCAAATGTCGA
TGTATGACGAGACCTCGTGCGCATAAATGGTAGCCAGCAGGTCGTGAAGG
ATCTTGGTGTActcagaaaggaggggaagctcCCTGAGGAAGGGATTGTA
AAGGCGGATTAGAGCCCGAGTCGAGGCATTCAGGTTCGCCAGACAGTCGT
TCGTGCCGCCCAATATGACCACACCCACAACGTCCCCGCCAAACGCTTGG
AGCAGTGGTATAGTACGACGTCGAATACTTTCCAGTACCTCGCCGTTTCG
ACCTGCATTTACCAAGCGGAAGGCCGGAAATCTCGCTTGGAGTACCTCCA
CGTAGTTAGCGCCGTACATCCCTTGCGTATGGGAGTCGCCCATGACAAGC
ACGACTGGTCGACGGACCTTGCAAGGATACAAAGCTGTCGTGCCGTTACG
CCACCAATTTCCGCTGCCACCCATGTCTTCCTGGGGGAGCTTGCGGATAG
ACTTGCCTCGATTGCATTTGCGAATATGTCCCAGCATTTTTGATTTCAGA
GAGCTGAGAAGAGGAATAACTTtccaggaggaaaagataaTATTTAATAA
ATTTTATGATTATCTTAAAAACTCTCATGAGATGAAAGAGTTTGGTGTAG
CGTGGGAACATGTGGGATTATTTAGAAACTACGAGATGTATGTCAAACGA
GTAAATGCGTTTGAATCTTCATCTCAATGCAAACTTGAAGTGTGATGTTC
AAATCGCACAAATGAAAGATAAAGTGTGGCTCGTGGGCACACGAGACAGT
CGGAAGCAGATATTCGGTGCGTGGATGGGGATGAAATATGGGCCAAAACA
GTTGCGCCATATTACCCgacaggaaagaagagcaagcAAGTAGGTAGCAC
TGAGCAATGATTTCGTAAGAGCTTGAAAACAACGTACCAAGCTCATCTAG
CACAAGTGTTTCACAGCCAGTGCAAAGAAAGTTCTTCTCTCCTACTTCCC
TCGTAGCACACGCCTTGCCCCGCCATTGGCGATAAGATACTTCTGTCGTG
GGTGTCTCAAAACCACTCAAAACCAACGCGAACTTCCCGACTCACGTCAC
ACGACGAATAACAGAGATGGAAAACTGATAGCCGTTTGAGTCTATGTGGG
AGTGGGAGATGATGACGACTGGGGTGATGCGTTGGAATGAAGGCTCCTGT
CTGGCCACAAGAGATGCGTAAAATCCTTCGCACTGTCGGCCGAACTTACG
ATGGGGAAGTCAAGTTTAGCCCGTCAGTTTGCCCGGCGTGAACTGCGACC
AAACTCAGTCCATGGGATGGAAGATCCTGCAAACGAAGGGACGCGTCAAC
GACCTTTCGGCGGTACCTGTCAGGCACACCCAATTCGGACCAGCACATTC
CACGCCCGGAAGTCAGGCGCTCCAGAGCAGCGGTCGGGTTCCCATGTTca
cgaaggaagggacaaaATGCTGACTCGACTTTCTTGTAAGCTTCAAGAGA
AGCGGCGCACATTTACCTTTGGCTTCGAAATCGATGAGGACGCTGCCAGG
ACGCGGGACCGAAAGCATGACCCACCGCTCGAAGATATTGTCCGGGACTT
GGACAGCTGGAACCTTGGCACCGACGAGCAGGTCAAGAAGCGttcaaaga
agaaagaagggaggaagaggagagacaAGGATCGAGCAGATACATCCGCG
TATCGGAATAATTCAAAACCGAGCGGACACCAGCTGCCAGGCGTCATTCC
TCCATTGTCTCCATCTGACCAGCCATCTATTCACACGTCGGTACAACTAC
ACCCGCAGCCTGTGATAGGTAAGTGTTTTAAGGACATAGTATTTTCCTAA
GTGAATTTGTAAAGATCCGTTTTATCTCGATGATGAAAAGCGAATTCCCT
GAATCCATTCGCAGATCAAGCTTATAGCCTGTCGAGTACGCCAACTCGCT
GTGCTACTGCAGCTCCAATTTCCTTGGATGTCTGAGAGAATCTGAACTTG
AAATATTGAACTTCACATTTGTGTATGCGTCGTCTCTTTGATGAAATTCA
CATGTCACTTGTTTTCCTTTTACACGTATGTATTCTCCAGAGGGTGTGAA
CGAGGACGACCTAGAAGTTCCTACTGATCAAGGCTTGTATTTGAGTATGC
AGCCAACACGTGCGAGTCGCCGAGATTCAGAAACCAGTGCCGCGAGCAGG
GACAGCAAAAGCAGCAATATTGACTTTGATGAGCAGGATGCTCGTATCAT
TCATTTGGACCACTGGGACGAGGCATCTacagagaaggaaaaactGCAAA
AGCGTTTTGGGCAAGGGACTCGTAATTTATTCGCCATTTCTCGGCGCAAT
GAGCAGAAGGGTGCACGTGTTATACGGCGCGATAAAGTTGTATGTCCTTT
GATGTCTAAAGAGCTCCCCAGTGCGGTTTCCATGAGTAACAAACCTGTGG
CTAATGCCTTCTCGTTCGGATTCGCGTTGTAGATTAGAATTCAAGAGGTC
TTGTTACCATGTAGGGGTTGTTGCATCGGACGAAAATATGATAAATGACA
TTTTTGAAGCGTTGTCTTTTAATTCTATTGGGTAGAGTTTTGGCTCGCTA
AATGAGATATTTTTCTTCTAGTGCAAATTTTCTAATCCTGCAATGATGTT
ACTGTGCATCTTATGCAAATAATTCCGTGGTTGTATTTCACATCCTCTTT
CCAATTGTTTATTGTCACGTCGCTTCCAAGAACTCTACCATACGTCCTTA
AGTCAATTACTTATGTCTCTTCTATACTCTTTTTTATGGAAATGAAATAA
CGGAAGAACATCG

Coding sequence (CDS) from alignment at CM002457.1:813187..817549+

>rna1510 ID=rna1510|Name=rna1510|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at CM002457.1:813187..817549+ (Nannochloropsis gaditana)
ATGGGGAAGTCAAGTTTAGCCCGTCAGTTTGCCCGGCGTGAACTGCGACC
AAACTCAGTCCATGGGATGGAAGATCCTGCAAACGAAGGGACGCGTCAAC
GACCTTTCGGCGGTACCTGTCAGGCACACCCAATTCGGACCAGCACATTC
CACGCCCGGAAGTCAGGCGCTCCAGAGCAGCGGTCGGGTTCCCATGTTca
cgaaggaagggacaaaATGCTGACTCGACTTTCTTGTAAGCTTCAAGAGA
AGCGGCGCACATTTACCTTTGGCTTCGAAATCGATGAGGACGCTGCCAGG
ACGCGGGACCGAAAGCATGACCCACCGCTCGAAGATATTGTCCGGGACTT
GGACAGCTGGAACCTTGGCACCGACGAGCAGGTCAAGAAGCGttcaaaga
agaaagaagggaggaagaggagagacaAGGATCGAGCAGATACATCCGCG
TATCGGAATAATTCAAAACCGAGCGGACACCAGCTGCCAGGCGTCATTCC
TCCATTGTCTCCATCTGACCAGCCATCTATTCACACGTCGGTACAACTAC
ACCCGCAGCCTGTGATAGGTAAGTGTTTTAAGGACATAGTATTTTCCTAA

Synonyms

Publications