EWM29179.1, cds1497 (CDS) Nannochloropsis gaditana

Overview
NameEWM29179.1
Unique Namecds1497
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:787410..787439 -
Alignment locationCM002457.1:787025..787267 -
Alignment locationCM002457.1:786703..786969 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29179.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g80.6506.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:787410..787439 -
CM002457.1supercontigCM002457.1:787025..787267 -
CM002457.1supercontigCM002457.1:786703..786969 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29179.1 vs. NCBI_GenBank
Match: gi|585111699|gb|EWM29179.1| (hypothetical protein Naga_100007g80 [Nannochloropsis gaditana])

HSP 1 Score: 372.474 bits (955), Expect = 9.493e-131
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 
Query:    1 MEESQGSTNAATSLSGYRLSAAVKEIQRQHPPATVQDMLTILGDSHALFKYAQADEWLQAVLRDEGIDCTTISRRDSTEFGRSNRGPTYGVQLVPRYKSARADPLQVTPKSLTNQQLRGNIFRLLHAVNPLFDTLVESLSLHPHLTFTNIGEKVIDQSLGRCTADLYFSVFESISRHIS 179
            MEESQGSTNAATSLSGYRLSAAVKEIQRQHPPATVQDMLTILGDSHALFKYAQADEWLQAVLRDEGIDCTTISRRDSTEFGRSNRGPTYGVQLVPRYKSARADPLQVTPKSLTNQQLRGNIFRLLHAVNPLFDTLVESLSLHPHLTFTNIGEKVIDQSLGRCTADLYFSVFESISRHIS
Sbjct:    1 MEESQGSTNAATSLSGYRLSAAVKEIQRQHPPATVQDMLTILGDSHALFKYAQADEWLQAVLRDEGIDCTTISRRDSTEFGRSNRGPTYGVQLVPRYKSARADPLQVTPKSLTNQQLRGNIFRLLHAVNPLFDTLVESLSLHPHLTFTNIGEKVIDQSLGRCTADLYFSVFESISRHIS 179
[Close]
BLAST of EWM29179.1 vs. NCBI_GenBank
Match: gi|585099715|gb|EWM20273.1| (hypothetical protein Naga_100167g15 [Nannochloropsis gaditana])

HSP 1 Score: 86.6557 bits (213), Expect = 3.394e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0 
Query:   19 LSAAVKEIQRQHPPATVQDMLTILGDSHALFKYAQADEWLQAVLRDEGI 67
            +SAAVKEI+RQHP ATVQD+LTIL +SHALFKYAQADEWLQA+ + EGI
Sbjct:   66 VSAAVKEIKRQHPSATVQDVLTILDNSHALFKYAQADEWLQAMFKKEGI 114
The following BLAST results are available for this feature:
BLAST of EWM29179.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111699|gb|EWM29179.1|9.493e-131100.00hypothetical protein Naga_100007g80 [Nannochlorops... [more]
gi|585099715|gb|EWM20273.1|3.394e-1779.59hypothetical protein Naga_100167g15 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1500rna1500Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications