rna1500, rna1500 (mRNA) Nannochloropsis gaditana

Overview
Namerna1500
Unique Namerna1500
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length321
Alignment locationCM002457.1:786703..787439 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g80.6506.mrna
Orig protein idgnl|cribi|Naga_100007g80.6506
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:786703..787439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g80gene1448Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1500rna1500-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29179.1cds1497Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1500 ID=rna1500|Name=rna1500|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
ATGCCTGAAGTTCAAGGGCATGGGGGAAGAGTGCTTCGTCGAGGCGGGAG
GCTGATTTTCTTTGTCCTCACACATATCCGTCAGCACAATATGAGGTTTC
GATGGTCGCCTTTCTCCCGCGGTCTTTCCACCTCTGACTTCTCCTGGAGC
TTGACTTGCGGCTTTGTCACCCTGTTGTCTAGCCGCGCTGCCTCGCTCAT
TAATAAGGGACAACCGTATAGCCTCCTGCAATTGTTCATCCTCCACGTCT
TCATGAGGATTTTCAGAGCCAAAAGGCACTCCTTTAACGTCGAAGTGGCC
GGTGAGGTTTTCAGAATCTAA
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protein sequence of rna1500

>rna1500-protein ID=rna1500-protein|Name=rna1500|organism=Nannochloropsis gaditana|type=polypeptide|length=179bp
MEESQGSTNAATSLSGYRLSAAVKEIQRQHPPATVQDMLTILGDSHALFK
YAQADEWLQAVLRDEGIDCTTISRRDSTEFGRSNRGPTYGVQLVPRYKSA
RADPLQVTPKSLTNQQLRGNIFRLLHAVNPLFDTLVESLSLHPHLTFTNI
GEKVIDQSLGRCTADLYFSVFESISRHIS
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mRNA from alignment at CM002457.1:786703..787439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1500 ID=rna1500|Name=rna1500|organism=Nannochloropsis gaditana|type=mRNA|length=737bp|location=Sequence derived from alignment at CM002457.1:786703..787439- (Nannochloropsis gaditana)
ATGGAGGAAAGTCAAGGTAGTACAAACGCAGTATTAGACTAGACCCGATC
GATGCGAGAGGCGTTGGAACAGGCGGAGCCTTTATCCGCCTTTAAAAGGG
AACAGTTGGTAGTCACATCAGGAAAACTTTGAAGGATAAAGGATTGCTAT
TTTCGGAGAGCGTAGATAAGAGGCAACCAGCCTATCTGGTTATCGTTTAT
CAGCAGCGGTAAAAGAAATCCAACGGCAGCACCCACCTGCTACAGTACAG
GACATGCTAACAATCCTGGGCGACAGCCATGCGTTATTCAAATACGCACA
AGCGGATGAGTGGCTGCAAGCAGTTCTAAGAGATGAGGGCATCGACTGCA
CTACGATCTCCCGACGAGACAGCACCGAGTTTGGCCGGAGCAATCGAGGC
CCGACTTACGGAGTTGTAAGGAAATCTGGCATGGACAACTTTAATGCGCG
GAGACGGAGAAAATCTTCAGCAATTGGTACCTAGATACAAGAGCGCGCGG
GCAGATCCATTGCAGGTCACTCCGAAGTCGTTGACCAATCAACAGTTGAG
AGGAAATATCTTTCGACTTTTACATGCGGTGAATCCTCTATTCGACACAT
TAGTTGAATCCCTCAGTCTGCACCCACATTTGACATTCACAAATATCGGA
GAGAAGGTGATTGACCAATCTCTTGGACGTTGCACGGCTGACCTGTATTT
TTCTGTTTTCGAATCAATAAGTAGACATATTTCGTGA
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Coding sequence (CDS) from alignment at CM002457.1:786703..787439-

>rna1500 ID=rna1500|Name=rna1500|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002457.1:786703..787439- (Nannochloropsis gaditana)
CAATTGGTACCTAGATACAAGAGCGCGCGGGCAGATCCATTGCAGGTCAC
TCCGAAGTCGTTGACCAATCAACAGTTGAGAGGAAATATCTTTCGACTTT
TACATGCGGTGAATCCTCTATTCGACACATTAGTTGAATCCCTCAGTCTG
CACCCACATTTGACATTCACAAATATCGGAGAGAAGGTGATTGACCAATC
TCTTGGACGTTGCACGGCTGACCTGTATTTTTCTGTTTTCGAATCAATAA
GTAGACATATTTCGTGAGCAACCAGCCTATCTGGTTATCGTTTATCAGCA
GCGGTAAAAGAAATCCAACGGCAGCACCCACCTGCTACAGTACAGGACAT
GCTAACAATCCTGGGCGACAGCCATGCGTTATTCAAATACGCACAAGCGG
ATGAGTGGCTGCAAGCAGTTCTAAGAGATGAGGGCATCGACTGCACTACG
ATCTCCCGACGAGACAGCACCGAGTTTGGCCGGAGCAATCGAGGCCCGAC
TTACGGAGTTATGGAGGAAAGTCAAGGTAGTACAAACGCACAATTGGTAC
CTAGATACAAGAGCGCGCGGGCAGATCCATTGCAGGTCACTCCGAAGTCG
TTGACCAATCAACAGTTGAGAGGAAATATCTTTCGACTTTTACATGCGGT
GAATCCTCTATTCGACACATTAGTTGAATCCCTCAGTCTGCACCCACATT
TGACATTCACAAATATCGGAGAGAAGGTGATTGACCAATCTCTTGGACGT
TGCACGGCTGACCTGTATTTTTCTGTTTTCGAATCAATAAGTAGACATAT
TTCGTGAGCAACCAGCCTATCTGGTTATCGTTTATCAGCAGCGGTAAAAG
AAATCCAACGGCAGCACCCACCTGCTACAGTACAGGACATGCTAACAATC
CTGGGCGACAGCCATGCGTTATTCAAATACGCACAAGCGGATGAGTGGCT
GCAAGCAGTTCTAAGAGATGAGGGCATCGACTGCACTACGATCTCCCGAC
GAGACAGCACCGAGTTTGGCCGGAGCAATCGAGGCCCGACTTACGGAGTT
ATGGAGGAAAGTCAAGGTAGTACAAACGCACAATTGGTACCTAGATACAA
GAGCGCGCGGGCAGATCCATTGCAGGTCACTCCGAAGTCGTTGACCAATC
AACAGTTGAGAGGAAATATCTTTCGACTTTTACATGCGGTGAATCCTCTA
TTCGACACATTAGTTGAATCCCTCAGTCTGCACCCACATTTGACATTCAC
AAATATCGGAGAGAAGGTGATTGACCAATCTCTTGGACGTTGCACGGCTG
ACCTGTATTTTTCTGTTTTCGAATCAATAAGTAGACATATTTCGTGAGCA
ACCAGCCTATCTGGTTATCGTTTATCAGCAGCGGTAAAAGAAATCCAACG
GCAGCACCCACCTGCTACAGTACAGGACATGCTAACAATCCTGGGCGACA
GCCATGCGTTATTCAAATACGCACAAGCGGATGAGTGGCTGCAAGCAGTT
CTAAGAGATGAGGGCATCGACTGCACTACGATCTCCCGACGAGACAGCAC
CGAGTTTGGCCGGAGCAATCGAGGCCCGACTTACGGAGTTATGGAGGAAA
GTCAAGGTAGTACAAACGCA
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Synonyms
Publications