EWM29294.1, cds1419 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|585111817|gb|EWM29294.1| (hypothetical protein Naga_100029g4 [Nannochloropsis gaditana]) HSP 1 Score: 180.644 bits (457), Expect = 1.952e-57 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94
MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL
Sbjct: 1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|553178569|ref|XP_005852572.1| (hypothetical protein NGA_0369602 [Nannochloropsis gaditana CCMP526] >gi|422295958|gb|EKU23257.1| hypothetical protein NGA_0369602 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 176.407 bits (446), Expect = 9.413e-56 Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0
Query: 1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94
MTLLSKSLL+VGLALV RASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQ
Sbjct: 1 MTLLSKSLLVVGLALVARASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQF 94
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|566032050|gb|ETI54961.1| (hypothetical protein F443_02317 [Phytophthora parasitica P1569] >gi|570335767|gb|ETO83715.1| hypothetical protein F444_02312 [Phytophthora parasitica P1976] >gi|570959795|gb|ETP24774.1| hypothetical protein F441_02288 [Phytophthora parasitica CJ01A1] >gi|570996055|gb|ETP52757.1| hypothetical protein F442_02281 [Phytophthora parasitica P10297]) HSP 1 Score: 55.0694 bits (131), Expect = 8.010e-8 Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 0
Query: 1 MTLLSKSLLLVGLALVVRASTRAMQQES---------PSVP--AVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISS--SRPDFAVFSHRGPLLRSR 92
M K L+ VG L+V A ++Q ES +P VV++L+AAF VSL G LL +G PI + DA L + +++ S PDF VF+HRG L R
Sbjct: 1 MVFFGKLLIAVGTLLLVHAGYYSVQYESYVKLTETADAQMPPFEVVVELVAAFLVSLVGVLLTSGEILPIR-SNDA-LHSRSLATVISSPDFHVFNHRGKALHKR 103
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|301102209|ref|XP_002900192.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102344|gb|EEY60396.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 53.9138 bits (128), Expect = 2.116e-7 Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 0
Query: 1 MTLLSKSLLLVGLALVVRASTRAMQQES---------PSVP--AVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISS--SRPDFAVFSHRGPLLRSR 92
M K L+ VG L+V A ++Q ES +P VV++L+AAF +SL G LL +G PI + DA L + +++ S PDF VF+HRG L R
Sbjct: 1 MAFFGKLLIAVGTLLLVHAGYYSVQYESYVKLTETADAQMPPFEVVVELVAAFLISLVGVLLTSGEILPIR-SNDA-LHSRSLATVISSPDFLVFNHRGKALHKR 103
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|695430003|ref|XP_009530335.1| (hypothetical protein PHYSODRAFT_302736 [Phytophthora sojae] >gi|348673087|gb|EGZ12906.1| hypothetical protein PHYSODRAFT_302736 [Phytophthora sojae]) HSP 1 Score: 53.1434 bits (126), Expect = 5.012e-7 Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 0
Query: 1 MTLLSKSLLLVGLALVVRASTRAMQQES---------PSVP--AVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSR 92
M K L+ VG L+V A ++Q ES +P VV++L+A+F +SL G LL +G PI R S PDF VF+HRG L R
Sbjct: 1 MAFFGKLLIAVGALLLVHAGYYSVQYESYVKLAETADAQMPPFEVVVELVASFLISLVGVLLTSGEIMPIRSNDAMHSRSLATVVSSPDFYVFNHRGKALHKR 103 The following BLAST results are available for this feature:
BLAST of EWM29294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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