EWM29294.1, cds1419 (CDS) Nannochloropsis gaditana

Overview
NameEWM29294.1
Unique Namecds1419
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:598359..598437 +
Alignment locationCM002457.1:598519..598724 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29294.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100029g4.9551.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:598359..598437 +
CM002457.1supercontigCM002457.1:598519..598724 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|585111817|gb|EWM29294.1| (hypothetical protein Naga_100029g4 [Nannochloropsis gaditana])

HSP 1 Score: 180.644 bits (457), Expect = 1.952e-57
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94
            MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL
Sbjct:    1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94          
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|553178569|ref|XP_005852572.1| (hypothetical protein NGA_0369602 [Nannochloropsis gaditana CCMP526] >gi|422295958|gb|EKU23257.1| hypothetical protein NGA_0369602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 176.407 bits (446), Expect = 9.413e-56
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0
Query:    1 MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL 94
            MTLLSKSLL+VGLALV RASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQ 
Sbjct:    1 MTLLSKSLLVVGLALVARASTRAMQQESPSVPAVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQF 94          
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|566032050|gb|ETI54961.1| (hypothetical protein F443_02317 [Phytophthora parasitica P1569] >gi|570335767|gb|ETO83715.1| hypothetical protein F444_02312 [Phytophthora parasitica P1976] >gi|570959795|gb|ETP24774.1| hypothetical protein F441_02288 [Phytophthora parasitica CJ01A1] >gi|570996055|gb|ETP52757.1| hypothetical protein F442_02281 [Phytophthora parasitica P10297])

HSP 1 Score: 55.0694 bits (131), Expect = 8.010e-8
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    1 MTLLSKSLLLVGLALVVRASTRAMQQES---------PSVP--AVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISS--SRPDFAVFSHRGPLLRSR 92
            M    K L+ VG  L+V A   ++Q ES           +P   VV++L+AAF VSL G LL +G   PI  + DA L  + +++  S PDF VF+HRG  L  R
Sbjct:    1 MVFFGKLLIAVGTLLLVHAGYYSVQYESYVKLTETADAQMPPFEVVVELVAAFLVSLVGVLLTSGEILPIR-SNDA-LHSRSLATVISSPDFHVFNHRGKALHKR 103          
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|301102209|ref|XP_002900192.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102344|gb|EEY60396.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 53.9138 bits (128), Expect = 2.116e-7
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    1 MTLLSKSLLLVGLALVVRASTRAMQQES---------PSVP--AVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISS--SRPDFAVFSHRGPLLRSR 92
            M    K L+ VG  L+V A   ++Q ES           +P   VV++L+AAF +SL G LL +G   PI  + DA L  + +++  S PDF VF+HRG  L  R
Sbjct:    1 MAFFGKLLIAVGTLLLVHAGYYSVQYESYVKLTETADAQMPPFEVVVELVAAFLISLVGVLLTSGEILPIR-SNDA-LHSRSLATVISSPDFLVFNHRGKALHKR 103          
BLAST of EWM29294.1 vs. NCBI_GenBank
Match: gi|695430003|ref|XP_009530335.1| (hypothetical protein PHYSODRAFT_302736 [Phytophthora sojae] >gi|348673087|gb|EGZ12906.1| hypothetical protein PHYSODRAFT_302736 [Phytophthora sojae])

HSP 1 Score: 53.1434 bits (126), Expect = 5.012e-7
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 0
Query:    1 MTLLSKSLLLVGLALVVRASTRAMQQES---------PSVP--AVVLDLLAAFAVSLAGALLGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSR 92
            M    K L+ VG  L+V A   ++Q ES           +P   VV++L+A+F +SL G LL +G   PI        R      S PDF VF+HRG  L  R
Sbjct:    1 MAFFGKLLIAVGALLLVHAGYYSVQYESYVKLAETADAQMPPFEVVVELVASFLISLVGVLLTSGEIMPIRSNDAMHSRSLATVVSSPDFYVFNHRGKALHKR 103          
The following BLAST results are available for this feature:
BLAST of EWM29294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585111817|gb|EWM29294.1|1.952e-57100.00hypothetical protein Naga_100029g4 [Nannochloropsi... [more]
gi|553178569|ref|XP_005852572.1|9.413e-5696.81hypothetical protein NGA_0369602 [Nannochloropsis ... [more]
gi|566032050|gb|ETI54961.1|8.010e-839.05hypothetical protein F443_02317 [Phytophthora para... [more]
gi|301102209|ref|XP_002900192.1|2.116e-738.10conserved hypothetical protein [Phytophthora infes... [more]
gi|695430003|ref|XP_009530335.1|5.012e-735.92hypothetical protein PHYSODRAFT_302736 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1421rna1421Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications