rna1421, rna1421 (mRNA) Nannochloropsis gaditana

Overview
Namerna1421
Unique Namerna1421
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2433
Alignment locationCM002457.1:598359..598724 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100029g4.9551.mrna
Orig protein idgnl|cribi|Naga_100029g4.9551
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:598359..598724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g4gene1372Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1421rna1421-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29294.1cds1419Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1421 ID=rna1421|Name=rna1421|organism=Nannochloropsis gaditana|type=mRNA|length=2433bp
GAGGCACTAGGGGGAAGGCAAACCCTTAATTTGTCAGCCAGCCCCTCAAA
TACTGATGCAGGCTTCACATTATTATGCCGGCTTGATACATGCCAACAAA
ACGTACTTTTCACGGCCTCTGGTACCCTTTCATGCAGGGACGACCTCTCT
GAACGTTACGAGCGACAAGCAGGATGGTCGCATCCGGAGGGGTCGCAGCT
CCTTCAAGGAGAGAAAGAAGGTATCTGCCCCAAAAACATCCTTTTGCCGC
CATCACAATGCTTGCCGGAGGAGTCTTGAGCATGGTGCGGGCGGAAAATG
GATGGCAGCCGCAGCAGCAACAACATGGTCAATACCATCCCCCGCCTCCC
CCCCCTCCTCCGTCACGTAGCAGTGCACCTGCTCCGCCTTTTCATCAACA
GCAAGGGAATCGGGGTGGACAACCGCCTCCGGGTCGGGAGGGCTACCCCC
CCGAGGTAAGTATTCATGTCGTGCGTCTCATTTCTACCGCTAGGGGATAC
CTGTGCATGCCGTGACGTCTGACTCGGCGCTTACCATCCCGATAGGGCTA
TTCTTGGCGGGGGCCATCACCAGTCGAGGGACTTCAGCGTCGCCAGGGCC
AGTACCCCGACCAGTTTCCGGAGCAGCAGCCACGCCCCGGCTCGTCCCCG
CCACAGGAAGGCTTCTGGTCCCGGCTGACGAATAAAATATTCGTAGGAGC
GAACGAAGGGCAAGACAGCCAGGGTTGGCAAGACGCGCGGCAGCAACCAT
CACAAAGACCTCTGTTCCCGCCCGCGGCCTATCCCGGACAAGGCCCGCCC
CCCCCCGCCCTGGCCTGCCCTCGACCCCAGCGCAGCAACCGCAGTACCCT
TCGCAGCCGCAGAAGCCGCAGCCAGGTCCATCTCAGTACACAGACGCCCT
AAGACCTCCATGGCAGCCCCCCCTCCCCCCCCCGAGCCGCCCCAAGAGGG
CCTGTGGGGGAGGCTCTCCGCGAGGATCGTTCGCACGACCCAAAGCCTGC
TGGAGAGCAAGGGCGAAGAAGACCAAGGCGAGCGGCGGCAGACGCAGTAT
CCTCCCCCGCCCCCCTACGGCAGGGACGGCCTGTCCAGCGAGGGTGGCCG
ACCTCCGTATCCAGGGGCCGGGGCCGGACCCTCGAGCGAGCAGTACACGC
CACCCCCGGCGCGGGCGGGTGACCCGTGGCGCGGCCCCGCTCGCTCCGAT
GGCCTCTATCCCAGCGCGCCTGGAGGGCCACAGGGGCGTCACCCAGATGC
CCGCCATCTCCCAGTCCCGCCTCCCCCTCCTCCTTCACCTTTCTCCCCTC
CTTCCGGCAGCGAAGGCGCGGTGGTGCAGGAGCAGGGCTTCGGGGACACG
AGAGCCCATCTGGAGGGGGAGGAAGACCTGCCGGACGTGTTCACGGTGGG
GGACAACATGCTCCTGGTCCGCGACCCTCGGGGCCTCCGAGAGAAGATCC
GGAGCTTTGCCCAGGCAGGCTCGCAGAGCCTGGAGGTCCTGGCCGCTTTC
GAGGGCGGTCTGAAGCCCTACAGGGCGCCGGGCGGGCAGCGGACGGAGAG
CGCCGAGGGCCTGGTGCACGAAGCAGTGCTGATGGCCCATACCCGCGCCA
CGCTGGACGGGCTCGCGGGGACCCTGCGCCGCGAGCTGGAGGCCGCGACG
ACGGAGGAGGAGCGGCATGCCAAGCAGGAGGAATTCACGCAGAAGGTGCA
CGAGATCGTGGCCAGAGAGGGGCAAGTATACCTTCCCGCCCTGCCGCGTG
CCGTCCACGACTTTGCCAGCTCGGTGCCCCTGCGCACAAACCTGGAACAG
ACGCTCAAGATGTTGGCCTTTCGCGGAGTCCCCCTGACGATCTTCTGCCC
CGGCTACGGTGACGTCGTGGCGCACATTCTGGCGTCGTCAGCCCCAGGTC
TGGCGGCTCATGGCGGATTCCTTCCCCCAAATCTTCGCCTTGTCTCGAAT
TTTTTCCGTGCCGGACCCGACGGGGTGGCCCATGGCTTTTCGGGCCCCGT
GGTCCACGCTCTGAACATGAACATGACCACCGCCAGGCATTTTCGGTCGG
GGATGATGCGGGGCGCATCGGTAGGGATGGGGGGGGGAGAGCTGCGCTCA
CCGTCAAACGTCTTCCTCCTTGGGGGTTCCCTTGGAGACTTGAAGATGGC
GAGCGGGGGGGGGATGGAGCGACAGGTAATATCGTTGGGCTTTCTTGAGA
CAGGACGAGACCTCGTGGCGCAACTCCCTCTTTTCCTAGAGGCATACGAT
GTTGTCATCATGGGTGATGGAGGTATGCAGTATGCAAATCATTTGATTGG
GCAAGTGCTAGGCACCGGCTGAAGCAAAGCGAGCGGAGGCAGCAAATAGG
AGACCAAAAGGAGCCGTTTGGAGCCACAGCGCGAGGCAAGAGAATTCAAC
GAAAGTAAAAATAATGTTGGTCCCCGGCATGGA
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protein sequence of rna1421

>rna1421-protein ID=rna1421-protein|Name=rna1421|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MTLLSKSLLLVGLALVVRASTRAMQQESPSVPAVVLDLLAAFAVSLAGAL
LGAGPFRPIHLAQDASLRCKDISSSRPDFAVFSHRGPLLRSRQL
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mRNA from alignment at CM002457.1:598359..598724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1421 ID=rna1421|Name=rna1421|organism=Nannochloropsis gaditana|type=mRNA|length=366bp|location=Sequence derived from alignment at CM002457.1:598359..598724+ (Nannochloropsis gaditana)
ATGACATTGCTTTCGAAATCCTTGCTTCTGGTGGGTCTGGCTCTAGTGGT
GCGGGCTTCTACACGTGCGATGCAGCAAGGTTCGCGAGTGGTCTTCAATA
CTTATTTATGAATTTCGAAAGTGTCAACACTTACACGATTTCGATCTATA
AACTACACAGAAAGTCCCTCTGTCCCAGCCGTGGTGTTGGATTTGCTTGC
GGCATTCGCAGTTTCGCTGGCAGGAGCCCTGTTGGGAGCCGGCCCTTTTC
GCCCCATTCATCTTGCTCAAGACGCTTCCCTCCGCTGCAAAgacatttcc
tcctcccgacctgATTTCGCTGTCTTCAGTCATCGAGGACCTTTATTGCG
GAGCCGTCAACTCTAA
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Coding sequence (CDS) from alignment at CM002457.1:598359..598724+

>rna1421 ID=rna1421|Name=rna1421|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at CM002457.1:598359..598724+ (Nannochloropsis gaditana)
ATGACATTGCTTTCGAAATCCTTGCTTCTGGTGGGTCTGGCTCTAGTGGT
GCGGGCTTCTACACGTGCGATGCAGCAAGAAAGTCCCTCTGTCCCAGCCG
TGGTGTTGGATTTGCTTGCGGCATTCGCAGTTTCGCTGGCAGGAGCCCTG
TTGGGAGCCGGCCCTTTTCGCCCCATTCATCTTGCTCAAGACGCTTCCCT
CCGCTGCAAAgacatttcctcctcccgacctgATTTCGCTGTCTTCAGTC
ATCGAGGACCTTTATTGCGGAGCCGTCAACTCTAAATGACATTGCTTTCG
AAATCCTTGCTTCTGGTGGGTCTGGCTCTAGTGGTGCGGGCTTCTACACG
TGCGATGCAGCAAGAAAGTCCCTCTGTCCCAGCCGTGGTGTTGGATTTGC
TTGCGGCATTCGCAGTTTCGCTGGCAGGAGCCCTGTTGGGAGCCGGCCCT
TTTCGCCCCATTCATCTTGCTCAAGACGCTTCCCTCCGCTGCAAAgacat
ttcctcctcccgacctgATTTCGCTGTCTTCAGTCATCGAGGACCTTTAT
TGCGGAGCCGTCAACTCTAA
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Synonyms
Publications