rna1390, rna1390 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1390
Unique Name	rna1390
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2833
Alignment location	CM002457.1:524272..526926 -

Link to JBrowse

Properties


Property Name	Value
Product	nadph--cytochrome p450 reductase
Orig transcript id	gnl\|cribi\|Naga_100029g35.9550.mrna
Orig protein id	gnl\|cribi\|Naga_100029g35.9550
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:524272..526926 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100029g35	gene1342	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29293.1	cds1388	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1390	rna1390-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:524272..526926-
coding sequence from alignment at CM002457.1:524272..526926-

mRNA sequence

>rna1390 ID=rna1390|Name=rna1390|organism=Nannochloropsis gaditana|type=mRNA|length=2833bp
CACATGTGTGGTGGGGCACGCCCGACTCGTTTCTATCTTGATTCACAGCG
ATAGGAGGGACTGGCATGCGTGGCATTCCGCTAAGGTCTCCGTCACGTGC
CTGCCCTGCGAAAATAAACCCACACCGGCTACATCTTTTTCCAAGTCGTT
TAACATATTTGAATGTACATCATTTCACAGGAAGGGTCGGTTTGTGGGCA
ACACACGCCATAATTGACACGCCGTGGTATTTCAAACCCCTAGCCCTTCT
CGGCGGGGCGCCAAACGCAGAAAGCCGATTCCTCAGCTACTTGTATAAAA
ATGGTTGAAGACGGCATCATCACACCGTGGACTGTATTAGCAGCCCTACT
GACAGCCTCCACAGCTGTGGCGCTCCTTGTAACCCGTTTTGTCCGCAAGG
CACCGCCTCTGCCGTTAGACCCGAAGGAGGGGCCTCGAACGGGGCGAGTG
ACCAGAAATTCCGTAGAAGCGGGCTCCTTCCCAAACGGCGCCATAGACAT
TTACTTTGGTAGCCAGACGGGTACAGCAGAGGGGTTTGCCAAGGGTCTCG
CGAGGGAGGCTTCGCGTTACGGCTTTGAAGGTCGCGTGGTGGATTTGGAA
ACATTCGAGCCTGAAAAATTACAGGCCACAAGCCTGGCGATATTTCTATT
GGCTACGTATGGGGAGGGGGATCCCACAGACAACGCGATGGCCTTCTCCA
AGTGGCTGCGAAACGAGGATGACGAGCTCTCGGAGCAGGCCTTGGGGGGG
TTGAAGTACGCCGTCTTTGGCCTCGGAAGTACTCAGTACGAGCACTACAA
TAAGATGGGTAAAGTAGCACACCAGCGGTTGCAAGACCTGGGGGCCCGCC
CCGTGGTCGACTTGGGCCTGGGCGACGAGCTGACGGTGGAGGAAGATTTT
GAGAGATGGAGCGAGGGCCTCTGGTCCGAGTTCACACAGGCGGCTATCGA
AATGGGCCGTTCCGATACGGTTGCCATTGTAGAGCCGGCTGAGGTCCCAG
CGCAAGGGGAGCAGCTAGACTTCACCCTGAAGCTGCTGCCGACGAAGGGG
CTTCTGGGTCGAAGCACCGGGAAAGAGAAGGTCGGGCCCAGCGCGAGCAA
CGGCGCCGGGGTGGTGAAGCTGGACGAGAGCAAGATCCAGGCGTCTACAA
AGTTCTACTTCCACAACCACGAGGTGGCGGTGTTGACCAACCGAGAGCTC
CGCTCGCCCAGGGACGGGGGCTCCACGCGACATGTGGAACTGGACCTGGC
AGGCTCGGGCCTCACGTACGCAACGGCCGACAACCTCGCTGTCCTGCCCG
AGAACCCGGCCGCGGTGGTGGAGGCAGTGGCCGGCGGCCAAGGGTACGAC
CTGGACGCTCTCTTCGACATGGTGTGCGAGAAGGCCAAGTTCCCAACGCC
GTGCACGGTCCGCGACGCCCTGACGCTCTACCTCGACCTGTGCGGACTCC
CGCGCCGTACCACCTTAGGTCAACTGGCGGCGTTCGCCCTCTCAGCCAAA
GAAGCCGAGCGAATGAAATTTTTAGCTTCGAAACAGGGCCGCGAAGAGTA
CAATCGTTTTGTCGTCCAGGAAGGTCGCTCTCTGGCTGAACTCATCACGG
AAAGCTTCCCTTCGGTCCGCTTGCCTCTGCAGCACTTGATCAACCTGGCG
CCGCACCTACAGCCCCGCTACTACACCATCTCGTCCTCCTCCTCCGTCTA
CCCATCCCAGGTGCATGCCACCGTCGCGGTCACCAAAGACGAGCCCCGAC
CAGGCCGCGTGCATTGGGGGGTCTGCTCGAGCTACTTGGCCGCCCCCTCC
ACCCAGCGCGTGCGAATTTTCATACGACCTTCCAGCTTCCGCCTCCCCGT
CGATAGTGCCACACCAATCATCCTCATAGGTCCGGGCACGGGGATAGCTC
CCATGCGTGCCTTGCTCCAAGAACGACGCTATCAACGTCAGGCGGCGGGC
AAGGAGGTGGGCGAGACCCTCCTTTACTTCGGCTGCCGGCGACGGGATAC
GGACTTTCTGTACGAGGAGGAACTGGCGAGCTTCAAGGAAGACGGGACTC
TGACAGACTTGCAATTAGCTTTCAGCAGGGAGAAGAAGGAGAAGGTGTAC
GTGCAGCATCTCCTTGTTCAAAGCGCGAATGCAAGCAAGCTCTGGGCTTT
GATGTCGAAGAAGTCGGGCCACATATACGTGTGCGGTGGCACGAGCATGG
GTTTGGATGTACACAAAGCCATCGTAAGCGTTGTGGAGAGAGCGGGGAAG
TTGAACGAGAGGGCTGCGACTGATTACGTCAAGGCGTTGCAGGCCCAGGG
AAGGTATGTTCAGGAGCTGTGGGCCGCATAAGGTCGACGGTCCATTGAGC
ATTCGTCCGATCTAGGTCAGAATGATGGGGAAAATTGTCCAAATAATTTA
GCGCGAGCTTACGAGCTGTTTGCATTTGCTCATGGTGTATGTGGGCGAGA
GGAACCTGCGTGTTTTCGTGTTCAAGGAGTAGTGTGCGAGCGAATACCCG
CGCACGCATGTGTGGCAAGGAGGAAAGAAAGTGTGTCATAGGTTTCAGTA
GACCCCGTAGCAGACGCAATGAAAGGCAGTAGCAGTAGCAAGACAAGTGG
CGGCAAATACGGGTCATCGGATCACCAGCAGTCGTTTCTCTTTCCTCTCT
CCCTATGTTCTTCGCCGAACGGTCTTGATTCTTGCGGTAGGAACGATGGA
GGGGGAACAAGAGTAAGCGCAACAGAGTACTGACAAATACGGATGGAAGG
ATCATCTTAAGATGCCTTTGTAGAACATCTAAAAAGATAGCATAAAGAAA
TACAATCTAAACAAAATACAAGGTGCTTGAGTC

protein sequence of rna1390

>rna1390-protein ID=rna1390-protein|Name=rna1390|organism=Nannochloropsis gaditana|type=polypeptide|length=601bp
MTILSPCFTCVSSSSGFEGRVVDLETFEPEKLQATSLAIFLLATYGEGDP
TDNAMAFSKWLRNEDDELSEQALGGLKYAVFGLGSTQYEHYNKMGKVAHQ
RLQDLGARPVVDLGLGDELTVEEDFERWSEGLWSEFTQAAIEMGRSDTVA
IVEPAEVPAQGEQLDFTLKLLPTKGLLGRSTGKEKVGPSASNGAGVVKLD
ESKIQASTKFYFHNHEVAVLTNRELRSPRDGGSTRHVELDLAGSGLTYAT
ADNLAVLPENPAAVVEAVAGGQGYDLDALFDMVCEKAKFPTPCTVRDALT
LYLDLCGLPRRTTLGQLAAFALSAKEAERMKFLASKQGREEYNRFVVQEG
RSLAELITESFPSVRLPLQHLINLAPHLQPRYYTISSSSSVYPSQVHATV
AVTKDEPRPGRVHWGVCSSYLAAPSTQRVRIFIRPSSFRLPVDSATPIIL
IGPGTGIAPMRALLQERRYQRQAAGKEVGETLLYFGCRRRDTDFLYEEEL
ASFKEDGTLTDLQLAFSREKKEKVYVQHLLVQSANASKLWALMSKKSGHI
YVCGGTSMGLDVHKAIVSVVERAGKLNERAATDYVKALQAQGRYVQELWA
A

mRNA from alignment at CM002457.1:524272..526926-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1390 ID=rna1390|Name=rna1390|organism=Nannochloropsis gaditana|type=mRNA|length=2655bp|location=Sequence derived from alignment at CM002457.1:524272..526926- (Nannochloropsis gaditana)
TCGTGGGGGCGACGGGAGGTGTCACGCGTTGACAGCAGGGCCACATGGTA
TTTTCGAGTTCCGCAAAGTTGTCTTGTGACGAAGACAAAATATGGAATAA
CAAAGCACACATTAAATGCTATCACCCACATCTGTTTGAGTGTTATGCAG
AGGTAGAAATTGCCTTAAATTGGAGCAATTGTTGACTATGAAGGTGTCCC
ACGGCTTTTGAGGTTTAAGAAGAAAGGGGCCTTTACCCGCTTTGCCCCAG
TACTTGCCCCTCCACAGCCCGATATGCAGGAGACAGTTGTACTAGGACTT
GATTCAATATTTCACACTGTGCCCCAAAGTAAGCGGTGATCTGCGTGATG
ACAATTCTCTCACCCTGCTTCACTTGCGTGTCCTCTTCATCAGGCTTTGA
AGGTCGCGTGGTGGATTTGGAAACATTCGAGCCTGAAAAATTACAGGCCA
CAAGCCTGGCGATATTTCTATTGGCTACGTATGGGGAGGGGGATCCCACA
GACAACGCGATGGCCTTCTCCAAGTGGCTGCGAAACGAGGATGACGAGCT
CTCGGAGCAGGCCTTGGGGGGGTTGAAGTACGCCGTCTTTGGCCTCGGAA
GTACTCAGTACGAGCACTACAATAAGATGGGTAAAGTAGCACACCAGCGG
TTGCAAGACCTGGGGGCCCGCCCCGTGGTCGACTTGGGCCTGGGCGACGA
GCTGACGGTGGAGGAAGATTTTGAGAGATGGAGCGAGGGCCTCTGGTCCG
AGTTCACACAGGCGGCTATCGAAATGGGCCGTTCCGATACGGTTGCCATT
GTAGAGCCGGCTGAGGTCCCAGCGCAAGGGGAGCAGCTAGACTTCACCCT
GAAGCTGCTGCCGACGAAGGGGCTTCTGGGTCGAAGCACCGGGAAAGAGA
AGGTCGGGCCCAGCGCGAGCAACGGCGCCGGGGTGGTGAAGCTGGACGAG
AGCAAGATCCAGGCGTCTACAAAGTTCTACTTCCACAACCACGAGGTGGC
GGTGTTGACCAACCGAGAGCTCCGCTCGCCCAGGGACGGGGGCTCCACGC
GACATGTGGAACTGGACCTGGCAGGCTCGGGCCTCACGTACGCAACGGCC
GACAACCTCGCTGTCCTGCCCGAGAACCCGGCCGCGGTGGTGGAGGCAGT
GGCCGGCGGCCAAGGGTACGACCTGGACGCTCTCTTCGACATGGTGTGCG
AGAAGGCCAAGTTCCCAACGCCGTGCACGGTCCGCGACGCCCTGACGCTC
TACCTCGACCTGTGCGGACTCCCGCGCCGTACCACCTTAGGTCAACTGGC
GGCGTTCGCCCTCTCAGCCAAAGAAGCCGAGCGAATGAAATTTTTAGCTT
CGAAACAGGGCCGCGAAGAGTACAATCGTTTTGTCGTCCAGGAAGGTCGC
TCTCTGGCTGAACTCATCACGGAAAGCTTCCCTTCGGTCCGCTTGCCTCT
GCAGCACTTGATCAACCTGGCGCCGCACCTACAGCCCCGCTACTACACCA
TCTCGTCCTCCTCCTCCGTCTACCCATCCCAGGTGCATGCCACCGTCGCG
GTCACCAAAGACGAGCCCCGACCAGGCCGCGTGCATTGGGGGGTCTGCTC
GAGCTACTTGGCCGCCCCCTCCACCCAGCGCGTGCGAATTTTCATACGAC
CTTCCAGCTTCCGCCTCCCCGTCGATAGTGCCACACCAATCATCCTCATA
GGTCCGGGCACGGGGATAGCTCCCATGCGTGCCTTGCTCCAAGAACGACG
CTATCAACGTCAGGCGGCGGGCAAGGAGGTGGGCGAGACCCTCCTTTACT
TCGGCTGCCGGCGACGGGATACGGACTTTCTGTACGAGGAGGAACTGGCG
AGCTTCAAGGAAGACGGGACTCTGACAGACTTGCAATTAGCTTTCAGCAG
GGAGAAGAAGGAGAAGGTGTACGTGCAGCATCTCCTTGTTCAAAGCGCGA
ATGCAAGCAAGCTCTGGGCTTTGATGTCGAAGAAGTCGGGCCACATATAC
GTGTGCGGTGGCACGAGCATGGGTTTGGATGTACACAAAGCCATCGTAAG
CGTTGTGGAGAGAGCGGGGAAGTTGAACGAGAGGGCTGCGACTGATTACG
TCAAGGCGTTGCAGGCCCAGGGAAGGTATGTTCAGGAGCTGTGGGCCGCA
TAAGGTCGACGGTCCATTGAGCATTCGTCCGATCTAGGTCAGAATGATGG
GGAAAATTGTCCAAATAATTTAGCGCGAGCTTACGAGCTGTTTGCATTTG
CTCATGGTGTATGTGGGCGAGAGGAACCTGCGTGTTTTCGTGTTCAAGGA
GTAGTGTGCGAGCGAATACCCGCGCACGCATGTGTGGCAAGGAGGAAAGA
AAGTGTGTCATAGGTTTCAGTAGACCCCGTAGCAGACGCAATGAAAGGCA
GTAGCAGTAGCAAGACAAGTGGCGGCAAATACGGGTCATCGGATCACCAG
CAGTCGTTTCTCTTTCCTCTCTCCCTATGTTCTTCGCCGAACGGTCTTGA
TTCTTGCGGTAGGAACGATGGAGGGGGAACAAGAGTAAGCGCAACAGAGT
ACTGACAAATACGGATGGAAGGATCATCTTAAGATGCCTTTGTAGAACAT
CTAAAAAGATAGCATAAAGAAATACAATCTAAACAAAATACAAGGTGCTT
GAGTC

Coding sequence (CDS) from alignment at CM002457.1:524272..526926-

>rna1390 ID=rna1390|Name=rna1390|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at CM002457.1:524272..526926- (Nannochloropsis gaditana)
ATGACAATTCTCTCACCCTGCTTCACTTGCGTGTCCTCTTCATCAGGCTT
TGAAGGTCGCGTGGTGGATTTGGAAACATTCGAGCCTGAAAAATTACAGG
CCACAAGCCTGGCGATATTTCTATTGGCTACGTATGGGGAGGGGGATCCC
ACAGACAACGCGATGGCCTTCTCCAAGTGGCTGCGAAACGAGGATGACGA
GCTCTCGGAGCAGGCCTTGGGGGGGTTGAAGTACGCCGTCTTTGGCCTCG
GAAGTACTCAGTACGAGCACTACAATAAGATGGGTAAAGTAGCACACCAG
CGGTTGCAAGACCTGGGGGCCCGCCCCGTGGTCGACTTGGGCCTGGGCGA
CGAGCTGACGGTGGAGGAAGATTTTGAGAGATGGAGCGAGGGCCTCTGGT
CCGAGTTCACACAGGCGGCTATCGAAATGGGCCGTTCCGATACGGTTGCC
ATTGTAGAGCCGGCTGAGGTCCCAGCGCAAGGGGAGCAGCTAGACTTCAC
CCTGAAGCTGCTGCCGACGAAGGGGCTTCTGGGTCGAAGCACCGGGAAAG
AGAAGGTCGGGCCCAGCGCGAGCAACGGCGCCGGGGTGGTGAAGCTGGAC
GAGAGCAAGATCCAGGCGTCTACAAAGTTCTACTTCCACAACCACGAGGT
GGCGGTGTTGACCAACCGAGAGCTCCGCTCGCCCAGGGACGGGGGCTCCA
CGCGACATGTGGAACTGGACCTGGCAGGCTCGGGCCTCACGTACGCAACG
GCCGACAACCTCGCTGTCCTGCCCGAGAACCCGGCCGCGGTGGTGGAGGC
AGTGGCCGGCGGCCAAGGGTACGACCTGGACGCTCTCTTCGACATGGTGT
GCGAGAAGGCCAAGTTCCCAACGCCGTGCACGGTCCGCGACGCCCTGACG
CTCTACCTCGACCTGTGCGGACTCCCGCGCCGTACCACCTTAGGTCAACT
GGCGGCGTTCGCCCTCTCAGCCAAAGAAGCCGAGCGAATGAAATTTTTAG
CTTCGAAACAGGGCCGCGAAGAGTACAATCGTTTTGTCGTCCAGGAAGGT
CGCTCTCTGGCTGAACTCATCACGGAAAGCTTCCCTTCGGTCCGCTTGCC
TCTGCAGCACTTGATCAACCTGGCGCCGCACCTACAGCCCCGCTACTACA
CCATCTCGTCCTCCTCCTCCGTCTACCCATCCCAGGTGCATGCCACCGTC
GCGGTCACCAAAGACGAGCCCCGACCAGGCCGCGTGCATTGGGGGGTCTG
CTCGAGCTACTTGGCCGCCCCCTCCACCCAGCGCGTGCGAATTTTCATAC
GACCTTCCAGCTTCCGCCTCCCCGTCGATAGTGCCACACCAATCATCCTC
ATAGGTCCGGGCACGGGGATAGCTCCCATGCGTGCCTTGCTCCAAGAACG
ACGCTATCAACGTCAGGCGGCGGGCAAGGAGGTGGGCGAGACCCTCCTTT
ACTTCGGCTGCCGGCGACGGGATACGGACTTTCTGTACGAGGAGGAACTG
GCGAGCTTCAAGGAAGACGGGACTCTGACAGACTTGCAATTAGCTTTCAG
CAGGGAGAAGAAGGAGAAGGTGTACGTGCAGCATCTCCTTGTTCAAAGCG
CGAATGCAAGCAAGCTCTGGGCTTTGATGTCGAAGAAGTCGGGCCACATA
TACGTGTGCGGTGGCACGAGCATGGGTTTGGATGTACACAAAGCCATCGT
AAGCGTTGTGGAGAGAGCGGGGAAGTTGAACGAGAGGGCTGCGACTGATT
ACGTCAAGGCGTTGCAGGCCCAGGGAAGGTATGTTCAGGAGCTGTGGGCC
GCATAA

Synonyms

Publications