rna1311, rna1311 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1311
Unique Name	rna1311
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1612
Alignment location	CM002457.1:301950..303122 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100028g30.3320.mrna
Orig protein id	gnl\|cribi\|Naga_100028g30.3320
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:301950..303122 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100028g30	gene1265	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1311	rna1311-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29384.1	cds1309	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:301950..303122-
coding sequence from alignment at CM002457.1:301950..303122-

mRNA sequence

>rna1311 ID=rna1311|Name=rna1311|organism=Nannochloropsis gaditana|type=mRNA|length=1612bp
AGTAATATGAAGCCCTACCCGATTGTCACTATTGCGACTCTAGCCATTGG
CGCAGTAGCTGTGCACGGCTTCGTTATCCCAGCCCCATCGTCTCGACGCA
TCTCGCACGATCCTTGGAGCTCCACCAGGTTTCTGCGATATGTCGACGTG
TTACAATCCACAACACTGCCGTCTGACACACCTGGTATCAGTAGTAATAG
CATAGTAACCAATGGCTTGTACCCGTCCGATCCAGTTGACGACGCAAGCT
GTGTATCTACAGAAACAAACCTTCCAATCTCCTTGAGGAACGACCGTATC
GTTGAGAAGAAGTCAAAGCGGAGAGGTCCACCGCCACCTGTCATGGTAGC
AGACGGTGACGTCCTGGAAAGTTCTTGGATCCATCGCTCGTACGTGGCCA
CACATTATCTCGTCACGCTGGCAGCTATGCAACAGGTGGCGTCTACGTAT
GCGGGTAACGGGGGGGTGACGCCCGGGGACCTGACAATGTTGGCCGCGAC
GACGGCTTTCTCCGTCCTCTTCTCCGATTTTTTCAGCGGAATTTTCCATT
GGTCGGTGGATAATTATGGGAACGGAAAGACGCCGGTGTTGGGCACAGTG
ATCGAGGCCTTTCAAGGGCACCACGACGCGCCGTGGACGATCACGTACCG
GCAATTCAGCAATAACGTGCACAAGATTACCAAAATCACCATCCCCGCCA
TGCTAGCCATTGTAGCCCTTCACCCGTCTTCTCCTCTCGTCACGTTGTTT
GCAACTCTGTTCTTCAATCTGCAGGTACTCAGCCAGGAATTCCACAAGTT
ATCCCACTTGTCCAAGCCTCCCGCTTGGGCGGTGAGGCTTCAAGACCTGG
GCCTGATTATTTCCAGGAAAGAGCACGGACAACATCACTCCAGCCCATTT
GAAAGCAACTATTGCATCTTGACGGGTACTTGCAATCGTATGTTGGATGA
AAGTGGGTTCTTCCGGTTTTTGGAGAAAGCAGTGTACGATGTGACCGGCG
TGATGCCGAACTGTTGGAAGCAAGGCTCTTCGGAGTTTCGAGCAGAGATG
TTAGTGGGAAGAAGAGGTGGAGCGGACGCGAATATGGTGGACGAGAAGAT
GGAATGAGAGGAGTGACGCGGCAAGTTGCTCGGAAGGGATAAGGAGATAG
CGAAGTCCTGGGAAGCCTGTCCAGCATGTCCTCGACGTTGGGTGAAGGGA
GAACAGAGGCTACTCAAGACATGCGAAACAAGGGAGAAGAATGTGAAGGT
ATCCAAGATGTATATTACCATTTGTGGTGGTGTCTCGGTGTGTTTGTGCC
AAGGAAGCGGACCGGTAGGACGCTGACGCACATAGCCATGCTGACCGCAC
CCCTGCCCCGCAATTGTGGGAGGGGACAGGGCCAAGAAGAGTAACCGGAA
CCAGAACGATCTCAGTGCAAACGACAAGAGTGCAGCGTCTCCGTGTTGTG
CTTGGTTACTGAGTTTTGTCGAGGTACCCTGTCGATCAGTTCGGATACTT
GAAAAACTGATGCGAAATTTTGTTCACTGGAAGGGTGGTTCCCGCACCGG
GGTGACAAAGCGCGACTGCGGTGAGACCTGAAACATTCAGCCGGAAACAT
GAAAGAAAATGT

protein sequence of rna1311

>rna1311-protein ID=rna1311-protein|Name=rna1311|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MYAPQRLVSAQILFRHPSLLFLPVLMGLCTLVPDVTRAFTPLYISTPPAS
SPSVRHSFASPSARQCQTRRRSPWDPTHDLMRHAMQTVGHDAAVETALPL
LFGSWTLEEKRVIQPLWGMKPVRHAGALGIPDGSSSTFEVLLKPKGRLDQ
PVDSAVRGLDWTLNFKDMYATGRLEFKIVHPPPDKKLIANDQIPHIHYYS
GTFCDGLNRVEGFVERTLRERQVRRAAMYILQFRLGKRPANVFEWGMCTS
SIYTAWVDRSPKRRTGSVIRRIVPRVAPDVPCFKRLQTRRTRACGCQTQK
SVPM

mRNA from alignment at CM002457.1:301950..303122-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1311 ID=rna1311|Name=rna1311|organism=Nannochloropsis gaditana|type=mRNA|length=1173bp|location=Sequence derived from alignment at CM002457.1:301950..303122- (Nannochloropsis gaditana)
ATGTATGCGCCGCAACGATTGGTGTCGGCTCAAATCCTATTCCGGCATCC
TTCTCTTCTGTTTCTTCCGGTGCTGATGGGGCTCTGTACGCTTGTTCCCG
ACGTGACTCGTGCTTTTACGCCGCTGTACATATCAACCCCCCCCGCGTCG
TCGCCCTCCGTAAGACATTCCTTCGCTTCACCTTCAGCGCGACAGTGCCA
GACGAGAAGAAGAAGTCCATGGGATCCTACACACGACCTCATGCGCCATG
CGATGCAAACAGTTGGGCACGATGCGGCGGTGGAGACGGCCTTACCCTTG
CTTTTTGGCTCGTGGACTCTGGAGGAGAAGCGTGTGATTCAACCCCTGTG
GGGTATGAAACCCGTACGCCACGCGGGCGCCTTGGGTATACCCGATGGTT
CATCTTCCACATTCGAGGTCTTGCTGAAACCTAAAGGTCGCCTGGATCAA
CCGGTGGACAGCGCGGTGCGGGGCTTGGACTGGACCCTGAACTTCAAAGA
CATGTACGCCACGGGCCGCTTGGAGTTCAAAATCGTGCATCCCCCCCCGG
ACAAGAAGTTGATCGCCAACGACCAGATCCCCCACATTCATTACTACTCT
GGGACGTTTTGCGACGGTCTCAACCGTGTGGAGGGCTTTGTAGAGAGGTA
CGCGGATATCGAGGATGAAAAGTTAGGACCGATCCGAAAGAAAGTGAGGA
TCGGGAAATTTTGCCTTGAGAAAAAGAAGGAGGAAAAGGGGGAGGCGAAG
GATAGCATGGTGGCAGCCAGTCTATTGGCCTAGGACGGGGGGGGGGCGGC
TTACTGACCACCCCACTAATGACTTGTCCTGATAACGTCGGGTTGAATAT
GTGAGGACGTTGCGTGAGAGGCAAGTGCGTCGGGCAGCCATGTACATACT
TCAGTTCCGTCTAGGAAAAAGGCCTGCCAATGTATTTGAATGGGGAATGG
TAACCATATGTGTTCTGAGAAGAAACGGGTAGTGAAAGACGTGTTGTAGT
GTACTTCTAGCATCTATACCGCCTGGGTGGATCGGAGTCCAAAGCGCAGG
ACCGGGTCCGTGATACGACGGATCGTGCCACGTGTCGCCCCTGATGTGCC
CTGCTTCAAGAGGCTTCAGACAAGGAGGACTCGCGCATGTGGATGCCAGA
CACAGAAGAGCGTTCCGATGTGA

Coding sequence (CDS) from alignment at CM002457.1:301950..303122-

>rna1311 ID=rna1311|Name=rna1311|organism=Nannochloropsis gaditana|type=CDS|length=2745bp|location=Sequence derived from alignment at CM002457.1:301950..303122- (Nannochloropsis gaditana)
TGTACTTCTAGCATCTATACCGCCTGGGTGGATCGGAGTCCAAAGCGCAG
GACCGGGTCCGTGATACGACGGATCGTGCCACGTGTCGCCCCTGATGTGC
CCTGCTTCAAGAGGCTTCAGACAAGGAGGACTCGCGCATGTGGATGCCAG
ACACAGAAGAGCGTTCCGATGTGAGACGTTGCGTGAGAGGCAAGTGCGTC
GGGCAGCCATGTACATACTTCAGTTCCGTCTAGGAAAAAGGCCTGCCAAT
GTATTTGAATGGGGAATGATGTATGCGCCGCAACGATTGGTGTCGGCTCA
AATCCTATTCCGGCATCCTTCTCTTCTGTTTCTTCCGGTGCTGATGGGGC
TCTGTACGCTTGTTCCCGACGTGACTCGTGCTTTTACGCCGCTGTACATA
TCAACCCCCCCCGCGTCGTCGCCCTCCGTAAGACATTCCTTCGCTTCACC
TTCAGCGCGACAGTGCCAGACGAGAAGAAGAAGTCCATGGGATCCTACAC
ACGACCTCATGCGCCATGCGATGCAAACAGTTGGGCACGATGCGGCGGTG
GAGACGGCCTTACCCTTGCTTTTTGGCTCGTGGACTCTGGAGGAGAAGCG
TGTGATTCAACCCCTGTGGGGTATGAAACCCGTACGCCACGCGGGCGCCT
TGGGTATACCCGATGGTTCATCTTCCACATTCGAGGTCTTGCTGAAACCT
AAAGGTCGCCTGGATCAACCGGTGGACAGCGCGGTGCGGGGCTTGGACTG
GACCCTGAACTTCAAAGACATGTACGCCACGGGCCGCTTGGAGTTCAAAA
TCGTGCATCCCCCCCCGGACAAGAAGTTGATCGCCAACGACCAGATCCCC
CACATTCATTACTACTCTGGGACGTTTTGCGACGGTCTCAACCGTGTGGA
GGGCTTTGTAGAGAGTGTACTTCTAGCATCTATACCGCCTGGGTGGATCG
GAGTCCAAAGCGCAGGACCGGGTCCGTGATACGACGGATCGTGCCACGTG
TCGCCCCTGATGTGCCCTGCTTCAAGAGGCTTCAGACAAGGAGGACTCGC
GCATGTGGATGCCAGACACAGAAGAGCGTTCCGATGTGAGACGTTGCGTG
AGAGGCAAGTGCGTCGGGCAGCCATGTACATACTTCAGTTCCGTCTAGGA
AAAAGGCCTGCCAATGTATTTGAATGGGGAATGATGTATGCGCCGCAACG
ATTGGTGTCGGCTCAAATCCTATTCCGGCATCCTTCTCTTCTGTTTCTTC
CGGTGCTGATGGGGCTCTGTACGCTTGTTCCCGACGTGACTCGTGCTTTT
ACGCCGCTGTACATATCAACCCCCCCCGCGTCGTCGCCCTCCGTAAGACA
TTCCTTCGCTTCACCTTCAGCGCGACAGTGCCAGACGAGAAGAAGAAGTC
CATGGGATCCTACACACGACCTCATGCGCCATGCGATGCAAACAGTTGGG
CACGATGCGGCGGTGGAGACGGCCTTACCCTTGCTTTTTGGCTCGTGGAC
TCTGGAGGAGAAGCGTGTGATTCAACCCCTGTGGGGTATGAAACCCGTAC
GCCACGCGGGCGCCTTGGGTATACCCGATGGTTCATCTTCCACATTCGAG
GTCTTGCTGAAACCTAAAGGTCGCCTGGATCAACCGGTGGACAGCGCGGT
GCGGGGCTTGGACTGGACCCTGAACTTCAAAGACATGTACGCCACGGGCC
GCTTGGAGTTCAAAATCGTGCATCCCCCCCCGGACAAGAAGTTGATCGCC
AACGACCAGATCCCCCACATTCATTACTACTCTGGGACGTTTTGCGACGG
TCTCAACCGTGTGGAGGGCTTTGTAGAGAGTGTACTTCTAGCATCTATAC
CGCCTGGGTGGATCGGAGTCCAAAGCGCAGGACCGGGTCCGTGATACGAC
GGATCGTGCCACGTGTCGCCCCTGATGTGCCCTGCTTCAAGAGGCTTCAG
ACAAGGAGGACTCGCGCATGTGGATGCCAGACACAGAAGAGCGTTCCGAT
GTGAGACGTTGCGTGAGAGGCAAGTGCGTCGGGCAGCCATGTACATACTT
CAGTTCCGTCTAGGAAAAAGGCCTGCCAATGTATTTGAATGGGGAATGAT
GTATGCGCCGCAACGATTGGTGTCGGCTCAAATCCTATTCCGGCATCCTT
CTCTTCTGTTTCTTCCGGTGCTGATGGGGCTCTGTACGCTTGTTCCCGAC
GTGACTCGTGCTTTTACGCCGCTGTACATATCAACCCCCCCCGCGTCGTC
GCCCTCCGTAAGACATTCCTTCGCTTCACCTTCAGCGCGACAGTGCCAGA
CGAGAAGAAGAAGTCCATGGGATCCTACACACGACCTCATGCGCCATGCG
ATGCAAACAGTTGGGCACGATGCGGCGGTGGAGACGGCCTTACCCTTGCT
TTTTGGCTCGTGGACTCTGGAGGAGAAGCGTGTGATTCAACCCCTGTGGG
GTATGAAACCCGTACGCCACGCGGGCGCCTTGGGTATACCCGATGGTTCA
TCTTCCACATTCGAGGTCTTGCTGAAACCTAAAGGTCGCCTGGATCAACC
GGTGGACAGCGCGGTGCGGGGCTTGGACTGGACCCTGAACTTCAAAGACA
TGTACGCCACGGGCCGCTTGGAGTTCAAAATCGTGCATCCCCCCCCGGAC
AAGAAGTTGATCGCCAACGACCAGATCCCCCACATTCATTACTACTCTGG
GACGTTTTGCGACGGTCTCAACCGTGTGGAGGGCTTTGTAGAGAG

Synonyms

Publications