rna1235, rna1235 (mRNA) Nannochloropsis gaditana

Overview
Namerna1235
Unique Namerna1235
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1674
Alignment locationCM002457.1:116462..118922 -

Link to JBrowse

Properties
Property NameValue
Productdeoxycytidylate deaminase
Orig transcript idgnl|cribi|Naga_100083g2.6790.mrna
Orig protein idgnl|cribi|Naga_100083g2.6790
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:116462..118922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g2gene1189Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1235rna1235-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29463.1cds1234Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1235 ID=rna1235|Name=rna1235|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp
AGGACGAGTGCACACGAGACACTAAGGCTTCGACAAATGTGTTTGTACGG
CCCAGTGTCAACAAGATCATGAACAGCAGTAATGTGTTACGCGGTGGCTG
CAGAGTGCAAACGATGGGGAAGTGGCGACCAAGACGCTTGAGCATGGAAA
TGGGCGACTATCACCTACCACAAGACCTGCCGCAGGGTCTCAAACGCACA
AATATGTCCCTGAATGCCTGTGTGACCATTTGGGGGGGGTGAGAGGGTGT
CAAATCCATGCAAATTGAAGCTTACTGGGATTGGACGTGCTCTCGCTCAT
AGACCGTGTAGAAAGCAGCCCCCAACGGCCCAACGCTCTTCGACTGAGAA
AATGGCGTTTAGAAAATTCAACTTCGCATAACGAGCCATGTATTACAGTC
GCTAGTCTGTCTGGCACAACAGGTTGGTAAGGTGCTTAGAAACAAGACAT
TTCAGGACTCCTGTTTTCCTTCTTCGGTCCAAGTCTCCCGCACGTTTCAC
AACCTCCCCACTTCAACCACGGGCCTTCCTCGACCACCCTCGTTTACAAA
CCCCCCTGCCTCCACGCCGCCATTTTTCCTCCTGTCAAGTGCTCTACTTG
CCCTGGTTATCATTTGCGCAAGCGAAGTGGTGCGAGCCTCTCCAATTCAA
CCGTCTTGGTCGTCCCCCCAAATCGAGTCATCTCCTCAGTCGTTCTCACA
CTTCCTGCCAACACCATTTGACTCCGGCAACGGCAAAAGTCACCAAAAAA
CAAGCAGCAGTAGCACTCATAGCCTGTCCTCAACCATGGGCGAAGCGTCT
GGTAATCCCAGCAAGGGACGTCACCATGACGCACCTTCAGCCACCGGCAT
AGCCAGTCCAAGTGGGAAAACTCTCCCCTCCACCTCTGCCTCCCAAGCAA
GCATGGCTTCGACAGCAGCTTCGCTGACCTCAACCACAAAAGAAGAGCCC
ATGGGCCCCGACCGCCGCACAACAGTCACGACGCCGGGGCAGGTTTCGAA
GACAGGCACAGCGCAGGACTCCCAGGGGGGAAGCCCTGTGGGGAGTGTAA
CCAAGAGAGAGGACTATATATCCTGGGATGACTATTTCATGGGGGTGGCA
TTTCTGTCTGCGATGCGCTCCAAGGATCCGTCTACACAGGTGGGCGCTTG
CCTGGTCGACACTGAGAACAAGATCGTGGGCATTGGATACAACGGGTTCC
CCCGCGGGTGCAGTGATGATGCCCTCCCATGGGCGCGACAAAGCGATGGG
GGATTCCTGGACACCAAGTACGCTTACGTCTGTCATGCAGAGATGAACGC
GATTTTAAACAGGAATATTGCTCCTTTACACGACTGTCGTATGTACGTGG
CCCTCTTTCCATGCAACGAGTGTGCAAAACTCATCATTCAAAGCGGCGTA
AAAGACGTGATCTATCTTTCTGACAAATATCACGATGACGCCATCATGGT
TGCCTCGCGGAGACTCTTCGATCTGGCCGGGGTCCGGTACCGAAAGCACA
CGCCTAAAGTGAATCGTATCACGATTGATTTCTCTAGTGCTTAGAAGTAT
TCCTCAATCAGAAAAGTCCGTTTTACCTGGAAAGGAGCAAGGGGCCATGA
CATCTCAGACTCCCGATAAAAAGGTACAAGCAACAGAGCATAAAGAACAA
GTGTACACCTCAATGTTGGACAAT
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protein sequence of rna1235

>rna1235-protein ID=rna1235-protein|Name=rna1235|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTST
TKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDY
FMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQGSGA
DLLRVMKYSIRSIDTTGSPAGAVMMPSHGRDKAMGDSWTPSTLTSVMQR
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mRNA from alignment at CM002457.1:116462..118922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1235 ID=rna1235|Name=rna1235|organism=Nannochloropsis gaditana|type=mRNA|length=2461bp|location=Sequence derived from alignment at CM002457.1:116462..118922- (Nannochloropsis gaditana)
AGGACGAGTGCACACGAGACACTAAGGCTTCGACAAATGTGTTTGTACGG
CCCAGTGTCAACAAGATCATGAACAGCAGTAATGTGTTACGCGGTGGCTG
CAGAGTGCAAACGATGGGGAAGTGGCGACCAAGACGCTTGAGCATGGAAA
TGGGCGACTATCACCTACCACAAGACCTGCCGCAGGGTCTCAAACGCACA
AATATGTCCCTGAATGCCTGTGTGACCATTTGGGGGGGGTGAGAGGGTGT
CAAATCCATGCAAATTGAAGCTTACTGGGATTGGACGTGCTCTCGCTCAT
AGACCGTGTAGAAAGCAGCCCCCAACGGCCCAACGCTCTTCGACTGAGAA
AATGGCGTTTAGAAAATTCAACTTCGCATAACGAGCCATGTATTACAGTC
GCTAGTCTGTCTGGCACAACAGGTTGGTAAGGTGCTTAGAAACAAGACAT
TTCAGGACTCCTGTTTTCCTTCTTCGGTCCAAGTCTCCCGCACGTTTCAC
AACCTCCCCACTTCAACCACGGGCCTTCCTCGACCACCCTCGTTTACAAA
CCCCCCTGCCTCCACGCCGCCATTTTTCCTCCTGTCAAGTGCTCTACTTG
CCCTGGTTATCATTTGCGCAAGCGAAGTGGTGCGAGCCTCTCCAATTCAA
CCGTCTTGGTCGTCCCCCCAAATCGAGTCATCTCCTCAGTCGTTCTCACA
CTTCCTGCCAACACCATTTGACTCCGGCAACGGCAAAAGTCACCAAAAAA
CAAGCAGCAGTAGCACTCATAGCCTGTCCTCAACCATGGGCGAAGCGTCT
GGTAATCCCAGCAAGGGACGTCACCATGACGCACCTTCAGCCACCGGCAT
AGCCAGTCCAAGTGGGAAAACTCTCCCCTCCACCTCTGCCTCCCAAGCAA
GCATGGCTTCGACAGCAGCTTCGCTGACCTCAACCACAAAAGAAGAGCCC
ATGGGCCCCGACCGCCGCACAACAGTCACGACGCCGGGGCAGGTTTCGAA
GACAGGCACAGCGCAGGACTCCCAGGGGGGAAGCCCTGTGGGGAGTGTAA
CCAAGAGAGAGGACTATATATCCTGGGATGACTATTTCATGGGGGTGGCA
TTTCTGTCTGCGATGCGCTCCAAGGATCCGTCTACACAGGTGGGCGCTTG
CCTGGTCGACACTGAGAACAAGATCGTGGGCATTGGTAAAAGAGGGAAGG
AGGGAGGGGCAACGGGAGGGCAAGGCAGCGGAGCAGACCTTTTGCGAGTG
ATGAAGTATTCGATTCGATCAATTGTGAGGTGACACTCAATTCAGCATCC
TGCTGCATCCGGTGATATTGGGAGGGCGTGAGCTGCATTGCCGTAGGGGC
CTGGCGCGTCATTCCCCTCCTCTTCACCCAAAACTGTACCTATCAATTGT
TCTTACATACAACTTTTTGAATTTTTGCTTCATGTTACCACAGGATACAA
CGGGTTCCCCCGCGGGTGCAGTGATGATGCCCTCCCATGGGCGCGACAAA
GCGATGGGGGATTCCTGGACACCAAGTACGCTTACGTCTGTCATGCAGAG
ATGAACGCGATTTTAAACAGGAATATTGCTCCTTTACACGGTGGGTTGAT
AACTGCTTGGGGTTGAGCGACGTGCGGGCCAGTACCGGAGGCAGGAGGGA
CGGCGTAAGGGGAGAGGACAGGGGAAGGAGGGAGGGAGGATCAGGACATG
GGGATTCTCCAGCGGTCCCTATGAAGGGGCTTGCCCCTCTTTTACGGACT
GTGCTTGTTGGATAGGTCTTCAATGCTTGGGTAGGGTTGTCATTCCTGCC
TCGCTGACGTCTTCCTTTGCCCTTTCCATCCTTTTTCCTCCCCTTTCGGC
TTAGACTGTCGTATGTACGTGGCCCTCTTTCCATGCAACGAGTGTGCAAA
ACTCATCATTCAAAGCGGCGTAAAAGACGTGATCTATCTTTCTGACAAAT
ATCACGATGACGCCATCATGGTTGCCTCGCGGAGACTCTTCGATCTGGCC
GGGGTAAGGACAGGAGGCATGGTCTATTGTCTGTCTATACGAGTGTGCGT
AGTCTTGTCACAACACTCGGTTTTTGAGCCATTTTTCTTGTATTTTGATT
GTTTCTTCTTCAACTCTGCATCTTCGTGTCCTGTGCTTCTAAGGGCGGAA
GGGACGATGCCGTGGTGACCGGCCCATGTCGCTTTTTCCCCCTGTTGCAT
ATCTCAGATTTCCTTCTTTTTCATTTTAAATCCCACTTGGCATTTTGGGT
TTCCCATGTCTCTAACAGGTCCGGTACCGAAAGCACACGCCTAAAGTGAA
TCGTATCACGATTGATTTCTCTAGTGCTTAGAAGTATTCCTCAATCAGAA
AAGTCCGTTTTACCTGGAAAGGAGCAAGGGGCCATGACATCTCAGACTCC
CGATAAAAAGGTACAAGCAACAGAGCATAAAGAACAAGTGTACACCTCAA
TGTTGGACAAT
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Coding sequence (CDS) from alignment at CM002457.1:116462..118922-

>rna1235 ID=rna1235|Name=rna1235|organism=Nannochloropsis gaditana|type=CDS|length=1200bp|location=Sequence derived from alignment at CM002457.1:116462..118922- (Nannochloropsis gaditana)
GATACAACGGGTTCCCCCGCGGGTGCAGTGATGATGCCCTCCCATGGGCG
CGACAAAGCGATGGGGGATTCCTGGACACCAAGTACGCTTACGTCTGTCA
TGCAGAGATGAATGGGCGAAGCGTCTGGTAATCCCAGCAAGGGACGTCAC
CATGACGCACCTTCAGCCACCGGCATAGCCAGTCCAAGTGGGAAAACTCT
CCCCTCCACCTCTGCCTCCCAAGCAAGCATGGCTTCGACAGCAGCTTCGC
TGACCTCAACCACAAAAGAAGAGCCCATGGGCCCCGACCGCCGCACAACA
GTCACGACGCCGGGGCAGGTTTCGAAGACAGGCACAGCGCAGGACTCCCA
GGGGGGAAGCCCTGTGGGGAGTGTAACCAAGAGAGAGGACTATATATCCT
GGGATGACTATTTCATGGGGGTGGCATTTCTGTCTGCGATGCGCTCCAAG
GATCCGTCTACACAGGTGGGCGCTTGCCTGGTCGACACTGAGAACAAGAT
CGTGGGCATTGGTAAAAGAGGGAAGGAGGGAGGGGCAACGGGAGGGCAAG
GCAGCGGAGCAGACCTTTTGCGAGTGATGAAGTATTCGATTCGATCAATT
GATACAACGGGTTCCCCCGCGGGTGCAGTGATGATGCCCTCCCATGGGCG
CGACAAAGCGATGGGGGATTCCTGGACACCAAGTACGCTTACGTCTGTCA
TGCAGAGATGAATGGGCGAAGCGTCTGGTAATCCCAGCAAGGGACGTCAC
CATGACGCACCTTCAGCCACCGGCATAGCCAGTCCAAGTGGGAAAACTCT
CCCCTCCACCTCTGCCTCCCAAGCAAGCATGGCTTCGACAGCAGCTTCGC
TGACCTCAACCACAAAAGAAGAGCCCATGGGCCCCGACCGCCGCACAACA
GTCACGACGCCGGGGCAGGTTTCGAAGACAGGCACAGCGCAGGACTCCCA
GGGGGGAAGCCCTGTGGGGAGTGTAACCAAGAGAGAGGACTATATATCCT
GGGATGACTATTTCATGGGGGTGGCATTTCTGTCTGCGATGCGCTCCAAG
GATCCGTCTACACAGGTGGGCGCTTGCCTGGTCGACACTGAGAACAAGAT
CGTGGGCATTGGTAAAAGAGGGAAGGAGGGAGGGGCAACGGGAGGGCAAG
GCAGCGGAGCAGACCTTTTGCGAGTGATGAAGTATTCGATTCGATCAATT
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Synonyms
Publications