EWM29463.1, cds1234 (CDS) Nannochloropsis gaditana

Overview
NameEWM29463.1
Unique Namecds1234
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:117649..118137 -
Alignment locationCM002457.1:117369..117479 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29463.1
Productdeoxycytidylate deaminase
Orig transcript idgnl|cribi|Naga_100083g2.6790.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:117649..118137 -
CM002457.1supercontigCM002457.1:117369..117479 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016787hydrolase activity
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR015517dCMP_deaminase-rel
IPR002125CMP_dCMP_Zn-bd
Homology
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|585111999|gb|EWM29463.1| (deoxycytidylate deaminase [Nannochloropsis gaditana])

HSP 1 Score: 399.053 bits (1024), Expect = 1.453e-140
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQGSGADLLRVMKYSIRSIDTTGSPAGAVMMPSHGRDKAMGDSWTPSTLTSVMQR 199
            MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQGSGADLLRVMKYSIRSIDTTGSPAGAVMMPSHGRDKAMGDSWTPSTLTSVMQR
Sbjct:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQGSGADLLRVMKYSIRSIDTTGSPAGAVMMPSHGRDKAMGDSWTPSTLTSVMQR 199          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|585112000|gb|EWM29464.1| (deoxycytidylate deaminase [Nannochloropsis gaditana])

HSP 1 Score: 272.322 bits (695), Expect = 1.193e-89
Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 0
Query:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
            MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIG  G   G +
Sbjct:    1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCS 143          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|1214702920|gb|OWZ15025.1| (Deoxycytidylate deaminase [Phytophthora megakarya])

HSP 1 Score: 97.0561 bits (240), Expect = 4.584e-21
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 0
Query:   73 TGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGA 142
            TGT +  Q  +P  +V KR DY+SWDDYFM VAFLSAMRSKDPSTQVGAC+V+ E KIVGIG  G   G 
Sbjct:   88 TGTVE--QPTAPTSAVQKRSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPEKKIVGIGYNGFPNGC 155          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|489565904|ref|WP_003470410.1| (cytidine deaminase [Clostridium perfringens] >gi|110675834|gb|ABG84821.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens ATCC 13124] >gi|170713327|gb|EDT25509.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens CPE str. F4969] >gi|1002731221|gb|AMN35597.1| cytidine deaminase [Clostridium perfringens])

HSP 1 Score: 91.6633 bits (226), Expect = 5.249e-20
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0
Query:   88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQ---GSGADLLR 154
            ++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG  G   G +      G+  D L 
Sbjct:    2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNKGDFLE 71          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|704573477|ref|XP_010186202.1| (PREDICTED: deoxycytidylate deaminase-like, partial [Mesitornis unicolor])

HSP 1 Score: 89.7373 bits (221), Expect = 5.260e-20
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 0
Query:   80 QGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
             G S   S  KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIG  G   G +
Sbjct:   11 NGFSNEASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCS 74          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|489544180|ref|WP_003448844.1| (cytidine deaminase [Clostridium perfringens] >gi|169299502|gb|EDS81566.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens C str. JGS1495] >gi|170660714|gb|EDT13397.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens E str. JGS1987] >gi|170711173|gb|EDT23355.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens B str. ATCC 3626] >gi|177908466|gb|EDT70999.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens D str. JGS1721] >gi|182380416|gb|EDT77895.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens NCTC 8239] >gi|373227435|gb|EHP49749.1| hypothetical protein HMPREF9476_00757 [Clostridium perfringens WAL-14572] >gi|380304961|gb|EIA17244.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens F262] >gi|932129399|gb|ALG48660.1| dCMP deaminase [Clostridium perfringens] >gi|933006899|emb|CUN97340.1| cytidine/deoxycytidylate deaminase [Clostridium perfringens] >gi|942712700|gb|KQC92919.1| cytidine deaminase [Clostridium perfringens CP4] >gi|1002728301|gb|AMN32678.1| cytidine deaminase [Clostridium perfringens] >gi|1092199736|gb|AOY53806.1| dCMP deaminase [Clostridium perfringens] >gi|1151239574|gb|AQW26633.1| cytidine deaminase [Clostridium perfringens] >gi|1151971059|gb|AQW23672.1| cytidine deaminase [Clostridium perfringens] >gi|1198467961|gb|OUN55166.1| cytidine deaminase [Clostridium perfringens] >gi|1198665080|gb|OUP46818.1| cytidine deaminase [Clostridium perfringens])

HSP 1 Score: 91.6633 bits (226), Expect = 5.596e-20
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0
Query:   88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQ---GSGADLLR 154
            ++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG  G   G +      G+  D L 
Sbjct:    2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNKGDFLE 71          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|698781167|ref|XP_009823627.1| (hypothetical protein, variant 3 [Aphanomyces astaci] >gi|574121352|gb|ETV86829.1| hypothetical protein, variant 3 [Aphanomyces astaci])

HSP 1 Score: 92.4337 bits (228), Expect = 6.052e-20
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0
Query:   86 GSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGA 142
              V KR+DY+SWDDYFM VAFLS+MRSKDPSTQVGAC+V+ E KIVGIG  G   G 
Sbjct:   31 AKVHKRKDYLSWDDYFMSVAFLSSMRSKDPSTQVGACIVNAEKKIVGIGYNGFPNGC 87          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|499319723|ref|WP_011010215.1| (cytidine deaminase [Clostridium perfringens] >gi|18144727|dbj|BAB80772.1| deoxycytidylate deaminase [Clostridium perfringens str. 13] >gi|985325399|gb|KXA09337.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium perfringens])

HSP 1 Score: 91.6633 bits (226), Expect = 6.360e-20
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0
Query:   88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQ---GSGADLLR 154
            ++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG  G   G +      G+  D L 
Sbjct:    2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNKGDFLE 71          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|110682007|gb|ABG85377.1| (cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens SM101])

HSP 1 Score: 91.6633 bits (226), Expect = 6.780e-20
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0
Query:   88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
            ++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG  G   G +
Sbjct:    2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCS 57          
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|998684861|ref|XP_015479929.1| (PREDICTED: deoxycytidylate deaminase isoform X6 [Parus major])

HSP 1 Score: 91.6633 bits (226), Expect = 7.530e-20
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0
Query:   77 QDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
            Q   G S   S  KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIG  G   G +
Sbjct:    8 QQRNGFSSEASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCS 74          
The following BLAST results are available for this feature:
BLAST of EWM29463.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111999|gb|EWM29463.1|1.453e-140100.00deoxycytidylate deaminase [Nannochloropsis gaditan... [more]
gi|585112000|gb|EWM29464.1|1.193e-8995.10deoxycytidylate deaminase [Nannochloropsis gaditan... [more]
gi|1214702920|gb|OWZ15025.1|4.584e-2165.71Deoxycytidylate deaminase [Phytophthora megakarya][more]
gi|489565904|ref|WP_003470410.1|5.249e-2060.00cytidine deaminase [Clostridium perfringens] >gi|1... [more]
gi|704573477|ref|XP_010186202.1|5.260e-2062.50PREDICTED: deoxycytidylate deaminase-like, partial... [more]
gi|489544180|ref|WP_003448844.1|5.596e-2060.00cytidine deaminase [Clostridium perfringens] >gi|1... [more]
gi|698781167|ref|XP_009823627.1|6.052e-2070.18hypothetical protein, variant 3 [Aphanomyces astac... [more]
gi|499319723|ref|WP_011010215.1|6.360e-2060.00cytidine deaminase [Clostridium perfringens] >gi|1... [more]
gi|110682007|gb|ABG85377.1|6.780e-2069.64cytidine/deoxycytidylate deaminase family protein ... [more]
gi|998684861|ref|XP_015479929.1|7.530e-2061.19PREDICTED: deoxycytidylate deaminase isoform X6 [P... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1235rna1235Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications