EWM29463.1, cds1234 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|585111999|gb|EWM29463.1| (deoxycytidylate deaminase [Nannochloropsis gaditana]) HSP 1 Score: 399.053 bits (1024), Expect = 1.453e-140 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query: 1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQGSGADLLRVMKYSIRSIDTTGSPAGAVMMPSHGRDKAMGDSWTPSTLTSVMQR 199
MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQGSGADLLRVMKYSIRSIDTTGSPAGAVMMPSHGRDKAMGDSWTPSTLTSVMQR
Sbjct: 1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQGSGADLLRVMKYSIRSIDTTGSPAGAVMMPSHGRDKAMGDSWTPSTLTSVMQR 199
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|585112000|gb|EWM29464.1| (deoxycytidylate deaminase [Nannochloropsis gaditana]) HSP 1 Score: 272.322 bits (695), Expect = 1.193e-89 Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 0
Query: 1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIG G G +
Sbjct: 1 MGEASGNPSKGRHHDAPSATGIASPSGKTLPSTSASQASMASTAASLTSTTKEEPMGPDRRTTVTTPGQVSKTGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGYNGFPRGCS 143
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|1214702920|gb|OWZ15025.1| (Deoxycytidylate deaminase [Phytophthora megakarya]) HSP 1 Score: 97.0561 bits (240), Expect = 4.584e-21 Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 0
Query: 73 TGTAQDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGA 142
TGT + Q +P +V KR DY+SWDDYFM VAFLSAMRSKDPSTQVGAC+V+ E KIVGIG G G
Sbjct: 88 TGTVE--QPTAPTSAVQKRSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPEKKIVGIGYNGFPNGC 155
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|489565904|ref|WP_003470410.1| (cytidine deaminase [Clostridium perfringens] >gi|110675834|gb|ABG84821.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens ATCC 13124] >gi|170713327|gb|EDT25509.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens CPE str. F4969] >gi|1002731221|gb|AMN35597.1| cytidine deaminase [Clostridium perfringens]) HSP 1 Score: 91.6633 bits (226), Expect = 5.249e-20 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0
Query: 88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQ---GSGADLLR 154
++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG G G + G+ D L
Sbjct: 2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNKGDFLE 71
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|704573477|ref|XP_010186202.1| (PREDICTED: deoxycytidylate deaminase-like, partial [Mesitornis unicolor]) HSP 1 Score: 89.7373 bits (221), Expect = 5.260e-20 Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 0
Query: 80 QGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
G S S KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIG G G +
Sbjct: 11 NGFSNEASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCS 74
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|489544180|ref|WP_003448844.1| (cytidine deaminase [Clostridium perfringens] >gi|169299502|gb|EDS81566.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens C str. JGS1495] >gi|170660714|gb|EDT13397.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens E str. JGS1987] >gi|170711173|gb|EDT23355.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens B str. ATCC 3626] >gi|177908466|gb|EDT70999.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens D str. JGS1721] >gi|182380416|gb|EDT77895.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens NCTC 8239] >gi|373227435|gb|EHP49749.1| hypothetical protein HMPREF9476_00757 [Clostridium perfringens WAL-14572] >gi|380304961|gb|EIA17244.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens F262] >gi|932129399|gb|ALG48660.1| dCMP deaminase [Clostridium perfringens] >gi|933006899|emb|CUN97340.1| cytidine/deoxycytidylate deaminase [Clostridium perfringens] >gi|942712700|gb|KQC92919.1| cytidine deaminase [Clostridium perfringens CP4] >gi|1002728301|gb|AMN32678.1| cytidine deaminase [Clostridium perfringens] >gi|1092199736|gb|AOY53806.1| dCMP deaminase [Clostridium perfringens] >gi|1151239574|gb|AQW26633.1| cytidine deaminase [Clostridium perfringens] >gi|1151971059|gb|AQW23672.1| cytidine deaminase [Clostridium perfringens] >gi|1198467961|gb|OUN55166.1| cytidine deaminase [Clostridium perfringens] >gi|1198665080|gb|OUP46818.1| cytidine deaminase [Clostridium perfringens]) HSP 1 Score: 91.6633 bits (226), Expect = 5.596e-20 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0
Query: 88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQ---GSGADLLR 154
++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG G G + G+ D L
Sbjct: 2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNKGDFLE 71
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|698781167|ref|XP_009823627.1| (hypothetical protein, variant 3 [Aphanomyces astaci] >gi|574121352|gb|ETV86829.1| hypothetical protein, variant 3 [Aphanomyces astaci]) HSP 1 Score: 92.4337 bits (228), Expect = 6.052e-20 Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0
Query: 86 GSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGA 142
V KR+DY+SWDDYFM VAFLS+MRSKDPSTQVGAC+V+ E KIVGIG G G
Sbjct: 31 AKVHKRKDYLSWDDYFMSVAFLSSMRSKDPSTQVGACIVNAEKKIVGIGYNGFPNGC 87
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|499319723|ref|WP_011010215.1| (cytidine deaminase [Clostridium perfringens] >gi|18144727|dbj|BAB80772.1| deoxycytidylate deaminase [Clostridium perfringens str. 13] >gi|985325399|gb|KXA09337.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium perfringens]) HSP 1 Score: 91.6633 bits (226), Expect = 6.360e-20 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 0
Query: 88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGATGGQ---GSGADLLR 154
++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG G G + G+ D L
Sbjct: 2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWGNKGDFLE 71
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|110682007|gb|ABG85377.1| (cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens SM101]) HSP 1 Score: 91.6633 bits (226), Expect = 6.780e-20 Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0
Query: 88 VTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
++KREDYISWD+YFMGVA +SA RSKDP+TQVGAC+VD +NKIVGIG G G +
Sbjct: 2 ISKREDYISWDEYFMGVALISAKRSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCS 57
BLAST of EWM29463.1 vs. NCBI_GenBank
Match: gi|998684861|ref|XP_015479929.1| (PREDICTED: deoxycytidylate deaminase isoform X6 [Parus major]) HSP 1 Score: 91.6633 bits (226), Expect = 7.530e-20 Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0
Query: 77 QDSQGGSPVGSVTKREDYISWDDYFMGVAFLSAMRSKDPSTQVGACLVDTENKIVGIGKRGKEGGAT 143
Q G S S KREDY+ W +YFM VAFLSA RSKDPS+QVGAC+V++ENKIVGIG G G +
Sbjct: 8 QQRNGFSSEASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGMPNGCS 74 The following BLAST results are available for this feature:
BLAST of EWM29463.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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