rna1206, rna1206 (mRNA) Nannochloropsis gaditana

Overview
Namerna1206
Unique Namerna1206
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length219
Alignment locationCM002457.1:51085..51532 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100449g4.9453.mrna
Orig protein idgnl|cribi|Naga_100449g4.9453
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:51085..51532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100449g4gene1161Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1206rna1206-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29465.1cds1205Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1206 ID=rna1206|Name=rna1206|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGTTAAAGTGGGTATACACAGCATGCTTTTATCTGGATGCAGGTGTTGT
CCGTCTCTGTGAGATTATGGCGGGTATGATCCTTGAAAAAGACCACGCAC
GCATTGCCTCGCTCAGGGGCCCAACGCCATCCTTAGCTAGAAAAAGGTTG
CGAGTTTATGTGGTCTCACCCCCTTGCAGATGTATGACATGCGCCATGTT
TTTTTTCAACGTGAGATAA
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protein sequence of rna1206

>rna1206-protein ID=rna1206-protein|Name=rna1206|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MKARKEGHHASNCSVLAASSPVLPQLEYVTLPVLYHYFLEVLQISNEHSR
NEGITHLYTWHFSDAVSLGPKGTYTSKAVNPNAFFDELPLGSCWLRQNIV
LASSLRADWRTSEFCSDLHTVEPRNQDIATQ
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mRNA from alignment at CM002457.1:51085..51532+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1206 ID=rna1206|Name=rna1206|organism=Nannochloropsis gaditana|type=mRNA|length=448bp|location=Sequence derived from alignment at CM002457.1:51085..51532+ (Nannochloropsis gaditana)
ATGAAAGCCAGAAAGGAAGGTCATCATGCATCAAATTGTTCTgtcttggc
cgcctcctccccagtCCTTCCTCAGCTCGAGTATGTAACCTTACCTGTGC
TGTACCATTATTTTCTTGAAGTATTACAAATTTCTAACGAGCATTCAAGA
AATGAGGGTATCACGCATCTTTATACCTGGCATTTTTCCGATGCCGTTTC
CCTTGGTCCCAAAGGAACGTACACAAGCAAAGCAGTAAACCCCAATGCCT
TTTTTGACGAACTTCCTCTGGGTTCAGTCTAAAAACCTCTACCTATGAAC
TCTTTTACATCTACTAGCGCTGCTGTAGTGCTGGCTACGGCAAAATATTG
TCCTTGCTAGCTCGTTACGCGCCGACTGGAGAACTAGTGAATTCTGCAGT
GACTTGCACACGGTAGAGCCGAGAAATCAAGACATTGCTACACAGTAA
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Coding sequence (CDS) from alignment at CM002457.1:51085..51532+

>rna1206 ID=rna1206|Name=rna1206|organism=Nannochloropsis gaditana|type=CDS|length=792bp|location=Sequence derived from alignment at CM002457.1:51085..51532+ (Nannochloropsis gaditana)
ATGAAAGCCAGAAAGGAAGGTCATCATGCATCAAATTGTTCTgtcttggc
cgcctcctccccagtCCTTCCTCAGCTCGAGTATGTAACCTTACCTGTGC
TGTACCATTATTTTCTTGAAGTATTACAAATTTCTAACGAGCATTCAAGA
AATGAGGGTATCACGCATCTTTATACCTGGCATTTTTCCGATGCCGTTTC
CCTTGGTCCCAAAGGAACGTACACAAGCAAAGCAGTAAACCCCAATGCCT
TTTTTGACGAACTTCCTCTGGGTTCATGCTGGCTACGGCAAAATATTGTC
CTTGCTAGCTCGTTACGCGCCGACTGGAGAACTAGTGAATTCTGCAGTGA
CTTGCACACGGTAGAGCCGAGAAATCAAGACATTGCTACACAGTAAATGA
AAGCCAGAAAGGAAGGTCATCATGCATCAAATTGTTCTgtcttggccgcc
tcctccccagtCCTTCCTCAGCTCGAGTATGTAACCTTACCTGTGCTGTA
CCATTATTTTCTTGAAGTATTACAAATTTCTAACGAGCATTCAAGAAATG
AGGGTATCACGCATCTTTATACCTGGCATTTTTCCGATGCCGTTTCCCTT
GGTCCCAAAGGAACGTACACAAGCAAAGCAGTAAACCCCAATGCCTTTTT
TGACGAACTTCCTCTGGGTTCATGCTGGCTACGGCAAAATATTGTCCTTG
CTAGCTCGTTACGCGCCGACTGGAGAACTAGTGAATTCTGCAGTGACTTG
CACACGGTAGAGCCGAGAAATCAAGACATTGCTACACAGTAA
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Synonyms
Publications