EWM29471.1, cds1201 (CDS) Nannochloropsis gaditana

Overview
NameEWM29471.1
Unique Namecds1201
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:44253..44335 -
Alignment locationCM002457.1:43713..44144 -
Alignment locationCM002457.1:43245..43624 -

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Properties
Property NameValue
Start range43245
Start range.
Protein idEWM29471.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100714g1.8365.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:44253..44335 -
CM002457.1supercontigCM002457.1:43713..44144 -
CM002457.1supercontigCM002457.1:43245..43624 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29471.1 vs. NCBI_GenBank
Match: gi|585112010|gb|EWM29471.1| (hypothetical protein Naga_100714g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0 
Query:    1 MEGGSTIKGIDAGAYFPRRRRRRNANSRSHYGICEGNSYQFCSFKASRSLLFLCALAFLPHASAFRTTSPFATPMSRGSVRIDGANGAEGEGREAMMEEETLAARKAQEWLRIARSEGGRLNRRLPSARIRTSPSPSLPSFPLPGPGSLSPSSAYKDRMAGSKSRAVGGKATNGKSVGEHDKEVLERLRRRRYVECFSSLYPFSGIASRPLSRPPSPPNPAVPLALEFRLFSLALEYVLAISNSLPAPSSYTEHRRPLLPFPPPLPPPPPPSLLRRQEVGTVSVDPPRAFEKKQAGLR 298
            MEGGSTIKGIDAGAYFPRRRRRRNANSRSHYGICEGNSYQFCSFKASRSLLFLCALAFLPHASAFRTTSPFATPMSRGSVRIDGANGAEGEGREAMMEEETLAARKAQEWLRIARSEGGRLNRRLPSARIRTSPSPSLPSFPLPGPGSLSPSSAYKDRMAGSKSRAVGGKATNGKSVGEHDKEVLERLRRRRYVECFSSLYPFSGIASRPLSRPPSPPNPAVPLALEFRLFSLALEYVLAISNSLPAPSSYTEHRRPLLPFPPPLPPPPPPSLLRRQEVGTVSVDPPRAFEKKQAGLR
Sbjct:    1 MEGGSTIKGIDAGAYFPRRRRRRNANSRSHYGICEGNSYQFCSFKASRSLLFLCALAFLPHASAFRTTSPFATPMSRGSVRIDGANGAEGEGREAMMEEETLAARKAQEWLRIARSEGGRLNRRLPSARIRTSPSPSLPSFPLPGPGSLSPSSAYKDRMAGSKSRAVGGKATNGKSVGEHDKEVLERLRRRRYVECFSSLYPFSGIASRPLSRPPSPPNPAVPLALEFRLFSLALEYVLAISNSLPAPSSYTEHRRPLLPFPPPLPPPPPPSLLRRQEVGTVSVDPPRAFEKKQAGLR 298
[Close]
BLAST of EWM29471.1 vs. NCBI_GenBank
Match: gi|553185306|ref|XP_005854231.1| (hypothetical protein NGA_0207300, partial [Nannochloropsis gaditana CCMP526] >gi|422294832|gb|EKU22132.1| hypothetical protein NGA_0207300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 400.593 bits (1028), Expect = 1.722e-139
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 
Query:    1 MEGGSTIKGIDAGAYFPRRRRRRNANSRSHYGICEGNSYQFCSFKASRSLLFLCALAFLPHASAFRTTSPFATPMSRGSVRIDGANGAEGEGREAMMEEETLAARKAQEWLRIARSEGGRLNRRLPSARIRTSPSPSLPSFPLPGPGSLSPSSAYKDRMAGSKSRAVGGKATNGKSVGEHDKEVLERLRRRRYVECFSS 199
            MEGGSTIKGIDAGAYFPRRRRRRNANSRSHYGICEGNSYQFCSFKASRSLLFLCALAFLPHASAFRTTSPFATPMSRGSVRIDGANGAEGEGREAMMEEETLAARKAQEWLRIARSEGGRLNRRLPSARIRTSPSPSLPSFPLPGPGSLSPSSAYKDRMAGSKSRAVGGKATNGKSVGEHDKEVLERLRRRRYVECFSS
Sbjct:    1 MEGGSTIKGIDAGAYFPRRRRRRNANSRSHYGICEGNSYQFCSFKASRSLLFLCALAFLPHASAFRTTSPFATPMSRGSVRIDGANGAEGEGREAMMEEETLAARKAQEWLRIARSEGGRLNRRLPSARIRTSPSPSLPSFPLPGPGSLSPSSAYKDRMAGSKSRAVGGKATNGKSVGEHDKEVLERLRRRRYVECFSS 199
The following BLAST results are available for this feature:
BLAST of EWM29471.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112010|gb|EWM29471.1|0.000e+0100.00hypothetical protein Naga_100714g1, partial [Nanno... [more]
gi|553185306|ref|XP_005854231.1|1.722e-139100.00hypothetical protein NGA_0207300, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1202rna1202Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications