rna1202, rna1202 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1202
Unique Name	rna1202
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1598
Alignment location	CM002457.1:43245..44487 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100714g1.8365.mrna
Orig protein id	gnl\|cribi\|Naga_100714g1.8365
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:43245..44487 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100714g1	gene1156	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1202	rna1202-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29471.1	cds1201	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:43245..44487-
coding sequence from alignment at CM002457.1:43245..44487-

mRNA sequence

>rna1202 ID=rna1202|Name=rna1202|organism=Nannochloropsis gaditana|type=mRNA|length=1598bp
AGGCCCTCGCCAAGGGCGTCGACGTTCTCACGCTCTCGGCCACGCCTATT
CCCCGCACCCTACAAATGGCCCTCTCCGGTATGCGGGACGTCTCCCACAT
CGACACCGCGCCTTCGAGTCGGAAGCCCGTCGAGACTCACATCACAGCCT
GGGCCCCCGAGGCGGTGGAGACGGCCTTGCGGGAGGAGCTGGCTCATGGA
GGACAGGCCTTTTACGTGGTACCCCGCATCCGAGACATTCCCCACCACGT
GGAGATGTTGAAAGACTTGCTTAAAGGCGCGCGGAAAGATGGCAAGGATG
CCGCCATCGCGGTGGCCCACGGCGCTCTTCCTGCGGGGGAGGCGGAGGAA
GTCCTGGTCCGCTTTGCCATGCGTCAGGGCGATGTTTTGGTCGCCACCAC
GCTGATCGAGAACGGACTCGACGTGCCCTCGGTCAACACGGTGGTGGTTG
CGCAGGCCCACAAGCTCGGCCTTGCCTCTCTCTACCAGCTCCGTGGGAGG
GTGGGTCGGAGCGAAAAGCAAGCCTTTGCCTTCTTCTTCCACCCTCGCTC
GGTGCAAGGGGAGGGGAAGGAGGCGGGGAAGCAGGAAAAGGGAGGGAAAG
GGGATCAGGTGAAGGCGAGCCTCTCCTCGGATCCTGCTCTTCGCAAGCGT
CAGCTCGCTCAACTCGGCGGCAAGTCCATGACCCAAGAAGCCGTGCAGCG
ACTCGCTGCCTTGAAGGAGTACAGTCACCTCCTCGGTATGGGGCCGCAAC
TTGCGAAGGCTGACTTAGCTATTCGCGGCGCCGGCGAAGTTCTGGGCTAC
GAACAGAGCGGGGATAAAGGCAGTGGCGTCGGGTATGACGTCTATATGAA
CATGCTGGCGGAGGCACTGGTTAAAGTCCGAGGCACAGCCATTGAACCCA
CGCCCTACACCGAGATCAACCTGGGGGACGGCTTGTCCAACGAACAAGTC
CTATCCTCCTCCTTCCTGCCCTCTGCCTTCTTCCCCAATGAGAAGACCCG
TACGGCTGAAATCGAGGAGGCTCGTCTCGCCCCCTCCTTCGAGAAACTTC
GGTCCCTTCAAAAACGATGGAGGGTCACCTACCACTGCTCGACCTCGCCT
ATGCCCCGGTCCGTCCGCCTTTTCTTCATCCGTCTGAACCTCCTCCTTGC
CTCGCGTGTCCTCAGTGGGGAAAACCTAGTCCTGCTCAAGTCGAGTGCAG
CGGAGGGTCGCGCTCGTTTGGTGCTTGTGACACGCAATCTCCTCTCCTTT
CACTGGGACGCTTTGTGCGGCGCCCTTCCTCCTTCTCACTTTTCTTCACG
TCCTTCGGCCCGACCTCATCCCAATTTGCGGCGAAATGTCTATTTTCGGG
AAGGGTCTATTGAGAACGGAGGAGGAAGGTTGGAAGAAGAGGAAGGAGAG
GAGGAGGAAAAGAGAGACGGGGTGCCAAGAAAGGGAAAGCGAGGATGTAT
TGTTATGGAGCTTCGGGACGCATCAATGGCAGCAGAGACAGCCTTGGCAG
TCTTATTTCCCTTCGCAGAGGTCATTCTTAACCAACGAGAAAGCCTTGCG
GAACGTATTGGTCAAGGCCGAAAAGGACAAAATAAAGCGGGTGGATAA

protein sequence of rna1202

>rna1202-protein ID=rna1202-protein|Name=rna1202|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MEGGSTIKGIDAGAYFPRRRRRRNANSRSHYGICEGNSYQFCSFKASRSL
LFLCALAFLPHASAFRTTSPFATPMSRGSVRIDGANGAEGEGREAMMEEE
TLAARKAQEWLRIARSEGGRLNRRLPSARIRTSPSPSLPSFPLPGPGSLS
PSSAYKDRMAGSKSRAVGGKATNGKSVGEHDKEVLERLRRRRYVECFSSL
YPFSGIASRPLSRPPSPPNPAVPLALEFRLFSLALEYVLAISNSLPAPSS
YTEHRRPLLPFPPPLPPPPPPSLLRRQEVGTVSVDPPRAFEKKQAGLR

mRNA from alignment at CM002457.1:43245..44487-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1202 ID=rna1202|Name=rna1202|organism=Nannochloropsis gaditana|type=mRNA|length=1243bp|location=Sequence derived from alignment at CM002457.1:43245..44487- (Nannochloropsis gaditana)
TGGAGAGCTGTCGATTGGAGGTTGTGAACGCTTTGCGTGCTGGCCTAGAG
GTTTATAGCCCGTGAGCGGTGGAGAGTGATTCCATATTCGATGACGGGAT
AGTAAGGGTCAAGGGATAAGGGACATCACTTACCATCCTTGCGAGAAGAA
GTATGGAAGGTGGGTCAACAATAAAAGGCATTGACGCGGGTGCATACTTT
CCAAGGCGAAGGAGAAGAAGGAATGCAAATTCGAGGTAAGAGCCTGTCTG
TCCTAAGTGCTTGTACCGGTGTGTTTCCCCAATTTACGCCGTCCTCCTCA
GAGTCCTCTGTCTTACTTGTCACGCATCAACCACCAACAAAAGATCCCAC
TATGGAATCTGTGAAGGAAATTCTTATCAGTTTTGTAGCTTCAAGGCATC
GCGCTCTCTCCTATTCCTCTGCGCTTTGGCATTTCTTCCGCATGCGAGCG
CGTTTCGCACCACCTCCCCTTTTGCGACGCCCATGAGCCGAGGAAGCGTT
CGTATCGACGGTGCGAACGGGGCGGAAGGAGAAGGAAGAGAAGCAATGAT
GGAAGAGGAGACGCTGGCAGCGCGGAAGGCACAAGAATGGCTCCGTATAG
CCCGCTCGGAAGGTGGTCGTCTCAACCGTCGATTGCCATCCGCCCGGATA
CGCACCTCCCCATCACCTTCTCTCCCCTCCTTTCCATTACCAGGCCCAGG
AAGCTTGAGTCCTTCTTCGGCTTATAAAGACAGAATGGCAGGCTCCAAAA
GCAGAGCCGTGGGCGGGAAAGCGACGTAGGTGGTGGGCCTCGGGTGGCGA
CCGGGTTGACGACAGGCCCCGCCTCATCATCGATTCTTTTCCTCCACTCA
CGCTGACCACCAGGAATGGCAAATCTGTGGGTGAGCACGACAAAGAGGTC
CTTGAACGCTTGCGGCGGCGCAGGTACGTTGAATGCTTTTCTTCTCTATA
CCCTTTTTCTGGCATTGCCTCCCGCCCTCTCTCCCGCCCTCCCTCCCCCC
CCAACCCGGCCGTCCCTCTGGCTCTCGAGTTCCGACTTTTCTCCTTGGCT
CTTGAGTACGTCCTCGCCATCTCAAACTCTCTTCCTGCCCCCTCCTCATA
TACAGAGCACCGTCGCCCTCTCCTTCCCTTCCCTCCCCCTCTTCCTCCTC
CTCCTCCTCCTTCTCTCCTTCGGCGACAGGAGGTCGGCACCGTCTCCGTC
GATCCCCCTCGGGCCTTCGAGAAGAAACAAGCGGGGTTAAGGA

Coding sequence (CDS) from alignment at CM002457.1:43245..44487-

>rna1202 ID=rna1202|Name=rna1202|organism=Nannochloropsis gaditana|type=CDS|length=2685bp|location=Sequence derived from alignment at CM002457.1:43245..44487- (Nannochloropsis gaditana)
GAATGGCAAATCTGTGGGTGAGCACGACAAAGAGGTCCTTGAACGCTTGC
GGCGGCGCAGGTACGTTGAATGCTTTTCTTCTCTATACCCTTTTTCTGGC
ATTGCCTCCCGCCCTCTCTCCCGCCCTCCCTCCCCCCCCAACCCGGCCGT
CCCTCTGGCTCTCGAGTTCCGACTTTTCTCCTTGGCTCTTGAGTACGTCC
TCGCCATCTCAAACTCTCTTCCTGCCCCCTCCTCATATACAGAGCACCGT
CGCCCTCTCCTTCCCTTCCCTCCCCCTCTTCCTCCTCCTCCTCCTCCTTC
TCTCCTTCGGCGACAGGAGGTCGGCACCGTCTCCGTCGATCCCCCTCGGG
CCTTCGAGAAGAAACAAGCGGGGTTAAGGAATCCCACTATGGAATCTGTG
AAGGAAATTCTTATCAGTTTTGTAGCTTCAAGGCATCGCGCTCTCTCCTA
TTCCTCTGCGCTTTGGCATTTCTTCCGCATGCGAGCGCGTTTCGCACCAC
CTCCCCTTTTGCGACGCCCATGAGCCGAGGAAGCGTTCGTATCGACGGTG
CGAACGGGGCGGAAGGAGAAGGAAGAGAAGCAATGATGGAAGAGGAGACG
CTGGCAGCGCGGAAGGCACAAGAATGGCTCCGTATAGCCCGCTCGGAAGG
TGGTCGTCTCAACCGTCGATTGCCATCCGCCCGGATACGCACCTCCCCAT
CACCTTCTCTCCCCTCCTTTCCATTACCAGGCCCAGGAAGCTTGAGTCCT
TCTTCGGCTTATAAAGACAGAATGGCAGGCTCCAAAAGCAGAGCCGTGGG
CGGGAAAGCGACATGGAAGGTGGGTCAACAATAAAAGGCATTGACGCGGG
TGCATACTTTCCAAGGCGAAGGAGAAGAAGGAATGCAAATTCGAGGAATG
GCAAATCTGTGGGTGAGCACGACAAAGAGGTCCTTGAACGCTTGCGGCGG
CGCAGGTACGTTGAATGCTTTTCTTCTCTATACCCTTTTTCTGGCATTGC
CTCCCGCCCTCTCTCCCGCCCTCCCTCCCCCCCCAACCCGGCCGTCCCTC
TGGCTCTCGAGTTCCGACTTTTCTCCTTGGCTCTTGAGTACGTCCTCGCC
ATCTCAAACTCTCTTCCTGCCCCCTCCTCATATACAGAGCACCGTCGCCC
TCTCCTTCCCTTCCCTCCCCCTCTTCCTCCTCCTCCTCCTCCTTCTCTCC
TTCGGCGACAGGAGGTCGGCACCGTCTCCGTCGATCCCCCTCGGGCCTTC
GAGAAGAAACAAGCGGGGTTAAGGAATCCCACTATGGAATCTGTGAAGGA
AATTCTTATCAGTTTTGTAGCTTCAAGGCATCGCGCTCTCTCCTATTCCT
CTGCGCTTTGGCATTTCTTCCGCATGCGAGCGCGTTTCGCACCACCTCCC
CTTTTGCGACGCCCATGAGCCGAGGAAGCGTTCGTATCGACGGTGCGAAC
GGGGCGGAAGGAGAAGGAAGAGAAGCAATGATGGAAGAGGAGACGCTGGC
AGCGCGGAAGGCACAAGAATGGCTCCGTATAGCCCGCTCGGAAGGTGGTC
GTCTCAACCGTCGATTGCCATCCGCCCGGATACGCACCTCCCCATCACCT
TCTCTCCCCTCCTTTCCATTACCAGGCCCAGGAAGCTTGAGTCCTTCTTC
GGCTTATAAAGACAGAATGGCAGGCTCCAAAAGCAGAGCCGTGGGCGGGA
AAGCGACATGGAAGGTGGGTCAACAATAAAAGGCATTGACGCGGGTGCAT
ACTTTCCAAGGCGAAGGAGAAGAAGGAATGCAAATTCGAGGAATGGCAAA
TCTGTGGGTGAGCACGACAAAGAGGTCCTTGAACGCTTGCGGCGGCGCAG
GTACGTTGAATGCTTTTCTTCTCTATACCCTTTTTCTGGCATTGCCTCCC
GCCCTCTCTCCCGCCCTCCCTCCCCCCCCAACCCGGCCGTCCCTCTGGCT
CTCGAGTTCCGACTTTTCTCCTTGGCTCTTGAGTACGTCCTCGCCATCTC
AAACTCTCTTCCTGCCCCCTCCTCATATACAGAGCACCGTCGCCCTCTCC
TTCCCTTCCCTCCCCCTCTTCCTCCTCCTCCTCCTCCTTCTCTCCTTCGG
CGACAGGAGGTCGGCACCGTCTCCGTCGATCCCCCTCGGGCCTTCGAGAA
GAAACAAGCGGGGTTAAGGAATCCCACTATGGAATCTGTGAAGGAAATTC
TTATCAGTTTTGTAGCTTCAAGGCATCGCGCTCTCTCCTATTCCTCTGCG
CTTTGGCATTTCTTCCGCATGCGAGCGCGTTTCGCACCACCTCCCCTTTT
GCGACGCCCATGAGCCGAGGAAGCGTTCGTATCGACGGTGCGAACGGGGC
GGAAGGAGAAGGAAGAGAAGCAATGATGGAAGAGGAGACGCTGGCAGCGC
GGAAGGCACAAGAATGGCTCCGTATAGCCCGCTCGGAAGGTGGTCGTCTC
AACCGTCGATTGCCATCCGCCCGGATACGCACCTCCCCATCACCTTCTCT
CCCCTCCTTTCCATTACCAGGCCCAGGAAGCTTGAGTCCTTCTTCGGCTT
ATAAAGACAGAATGGCAGGCTCCAAAAGCAGAGCCGTGGGCGGGAAAGCG
ACATGGAAGGTGGGTCAACAATAAAAGGCATTGACGCGGGTGCATACTTT
CCAAGGCGAAGGAGAAGAAGGAATGCAAATTCGAG

Synonyms

Publications