rna1181, rna1181 (mRNA) Nannochloropsis gaditana

Overview
Namerna1181
Unique Namerna1181
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2169
Alignment locationCM002456.1:1416328..1416821 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100287g1.6250.mrna
Orig protein idgnl|cribi|Naga_100287g1.6250
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1416328..1416821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100287g1gene1137Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1181rna1181-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29494.1cds1180Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1181 ID=rna1181|Name=rna1181|organism=Nannochloropsis gaditana|type=mRNA|length=2169bp
AAAACGACGTGCGCGTGGGTAAAGGACGAAAAATCAGGGTTAGCAGTGGT
ACAAAAAGATGTACCAACTCTTCGATTTTTTTCCTGCCAGTATTTCGTGG
CGTGAAGCGCTGAGGAAGGCAATAAGGGGCTTTCCCTTCCTCCCTTTCCT
TCTCGTTCTATACCCCTCTTTGCATGACTTTTCTCGCTGTAGGACCATTT
ACAACCGTTCTTCTCCACATGTTTCTTTACCAAGCCAAAATCAGGGGCAA
AACGATGAAGCCTCATCCTCCATTGCGGAAAGTTACACCAGGCCAGCGTC
CCTCCTTCCTCCTATGCTCCATCTCCCTTCTAGTTTTCCTGATCGTTTCT
TTTGCAGCGGAGCAGCCCGCCGCCAAAATATCGCCACAGGAAGAGGAAAA
CGTCTTTGTGGCAACTACAGAATGGCAGGCCATCCCTCCTGGGGCCTCCG
TACCGCCCGGTTTGCACGTTAAACTGGATCTTAGCACGGGGGAGAGGTTA
GGAAAACTGATGGACGGACCAGAAAGACAAGCCTTAAGGCCGGCAGGACA
GAGAAAGGAGGAATCTGCTCTCCAAGCCACGGATGTTGCGGGTTTTAAAA
GTAACAAGACGGGCGCAAAAGGAATTCTGGACTCTGTCGTGATCAAAAAC
ACTCCCGAGGAGACCCTTGAGGCCTCACAAGGTCCTCCTTTAAGCCGTCG
AGGGACCATGTTAAAAGTGCTGAGCGGCCTCCCGCCTCAAGAACGAGCGA
GCATGGGGATCGACTCTCTATTGGCCTCCCGTCCGCGGGCTGGCGAAGCT
TTGGGGGAGGAAGTGGTGGAAGGGGAGGAAAGGGAGGAGGAGAGGGCATT
CTGGAAGCAGGTGGAGACTCTGTGGGCGGAACGGCAAGATTTGCTCCTAC
AAGCCTACGAGAACATGCTGAAGCCGGCGGAGGAACTGGGGCGGTTGATC
GGGGTCTTGAAGGAGGGCGGGGAGGAGGAAGTGATGCGGGCGTTGATGGA
ACTGGAAGATTGGTTGTCAGACGTGGACATGGCCCAAGACTTTTATACCT
TAGGGGGGTGGCCGCTGTTGGTGAGCAAGTTAGGGTGGGAAGGAGGGAGG
GAGGGAGGGAGGGAGGTCCAGTGGCGAGCCGCTTGGGTGGTGGGAAATGC
GGTGAAGAACGACCGGCATTTCCAGGCGTGGGTGTTGGAGGGAGGGAAGG
AGGGAGGCGCGTCGGCCCTGACGCGTCTGTTGACAATTTGCCGGGAGGGA
GGGACCGAAGCCTGGGGCGAAGGAGAGGAGGAGGAAGAGCTTTTGCGGAA
AGCGGTATACGCCGTCACCTCGGCAGCACGTGGGAACCCTGCGGTGCAAG
CCAAGTTGGTGGAGGAAGGGGGGTTGGAGGTGCTAGGTCACCTCCTCCAT
TCCTCCGTTCCGCCCTCCCCCGGTTCTTCCCACCAAAGAAAAGGGCAACG
GCGGGCGCTGTGTCTGAAGCTGATTGCCTTCGCGCAGGACCTTGCCCTGG
AAGCAAAGCAGGCAGTGGCGGCAGCGTTGGAGGTGGCCGAGGCTCGTCAC
CCTCCCTCCATCCCGCCCTCCCTCCCACCTTCCCTCCTTGCCGGCGTCAC
TTCCCCCGCCTGGTGCGAGGGAATCTTGGGTCTGCTGGAGGAGGTGGTGG
GGGGGGAGGGAGGTAGGGAGGCACGGGCGCTGGAAGGGGTCCTGGAGGCG
ATGCAGCTCTTGCACGTCGACTGCGTCCGACAGGGTCGTTGGGAGGAGGG
AGGGAGGGAGGTGGAGAGGTTGCTGCGGCGGGCGAGGGAGGTGGTGGAGG
AGGAGGACTGGAAGGAGGGTGTGGACCGGGAATATTGGGAGGACCTGGTG
AATCTGATTGAGGCGCTGCTGGAGGAGACGAGGGAGGGAGGGCGGGCGGG
CGGGAGGGAGGAGCTGTAGGGAAAGGGGTGGCAATGTGGGAAGGGATGGA
GAACACCCGTCAAATGTGCGCACGGGCGCCAAAGCGGCATGCCCACGGCG
ACGCGGCTGCTGGTGGCCTGTCTGACAAACAATGCTTATTGATGACTGGG
TGGTCCGCCACCTGATTTTTTTAAACATCGCTGAATTCTCCTGCACGTGA
CTCTCGACCCCATCTCTGTCGTCACGTTTCCTACCCCCATCTCCGCCATG
TTTCCTAACATTTCCCTCC
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protein sequence of rna1181

>rna1181-protein ID=rna1181-protein|Name=rna1181|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MSAMVRSSYIGRDGGNRDGTGIVSPCKASQGASEIRETSSVQDFCTGVEQ
RGHEENLRRSVLGTHSVKEKAEVERLPECRRLENAG
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mRNA from alignment at CM002456.1:1416328..1416821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1181 ID=rna1181|Name=rna1181|organism=Nannochloropsis gaditana|type=mRNA|length=494bp|location=Sequence derived from alignment at CM002456.1:1416328..1416821- (Nannochloropsis gaditana)
ATGAGCGCGATGGTTAGGAGTTCGTACATCGGTCGGGACGGTGGAAACAG
GGATGGGACTGGGATCGTTTCCCCATGCAAGGCCTCTCAGGGGGCCTCTG
AGATACGCGAAACAAGTTCAGTTCAAGTTCAGGCATAGGTCCGCGAGGAT
GGAGTGTGCAAGTAATGCGTAATGCGATGAAGAAAGGACGGGGCGACACC
CTGGGATTAGCGGGTGGGGAGTGAGTATGCGTGCCGGCGGAAACAGGGAA
GGCGGAAAAGCGAGGAAGGTGCCTCGTTCTGCCCCGACATGTGCCTCCGC
GGAGTAGGACTTTTGTACGGGCGTAGAGCAACGAGGACACGAAGAGAATG
TTTAAACTTATGACGGAAAATCGGAAGGGATCCTTGCAGCAAGGCTTGTA
GTTGCGGAGGAGCGTGCTAGGAACACATAGCGTGAAAGAAAAAGCAGAAG
TCGAAAGACTGCCAGAATGTAGGAGACTGGAGAACGCTGGGTAG
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Coding sequence (CDS) from alignment at CM002456.1:1416328..1416821-

>rna1181 ID=rna1181|Name=rna1181|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at CM002456.1:1416328..1416821- (Nannochloropsis gaditana)
TTGCGGAGGAGCGTGCTAGGAACACATAGCGTGAAAGAAAAAGCAGAAGT
CGAAAGACTGCCAGAATGTAGGAGACTGGAGAACGCTGGGTAGGACTTTT
GTACGGGCGTAGAGCAACGAGGACACGAAGAGAATATGAGCGCGATGGTT
AGGAGTTCGTACATCGGTCGGGACGGTGGAAACAGGGATGGGACTGGGAT
CGTTTCCCCATGCAAGGCCTCTCAGGGGGCCTCTGAGATACGCGAAACAA
GTTCAGTTCAATTGCGGAGGAGCGTGCTAGGAACACATAGCGTGAAAGAA
AAAGCAGAAGTCGAAAGACTGCCAGAATGTAGGAGACTGGAGAACGCTGG
GTAGGACTTTTGTACGGGCGTAGAGCAACGAGGACACGAAGAGAATATGA
GCGCGATGGTTAGGAGTTCGTACATCGGTCGGGACGGTGGAAACAGGGAT
GGGACTGGGATCGTTTCCCCATGCAAGGCCTCTCAGGGGGCCTCTGAGAT
ACGCGAAACAAGTTCAGTTCAATTGCGGAGGAGCGTGCTAGGAACACATA
GCGTGAAAGAAAAAGCAGAAGTCGAAAGACTGCCAGAATGTAGGAGACTG
GAGAACGCTGGGTAGGACTTTTGTACGGGCGTAGAGCAACGAGGACACGA
AGAGAATATGAGCGCGATGGTTAGGAGTTCGTACATCGGTCGGGACGGTG
GAAACAGGGATGGGACTGGGATCGTTTCCCCATGCAAGGCCTCTCAGGGG
GCCTCTGAGATACGCGAAACAAGTTCAGTTCAA
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Synonyms
Publications