EWM29494.1, cds1180 (CDS) Nannochloropsis gaditana

Overview
NameEWM29494.1
Unique Namecds1180
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1416696..1416821 -
Alignment locationCM002456.1:1416473..1416514 -
Alignment locationCM002456.1:1416328..1416420 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29494.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100287g1.6250.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1416696..1416821 -
CM002456.1supercontigCM002456.1:1416473..1416514 -
CM002456.1supercontigCM002456.1:1416328..1416420 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29494.1 vs. NCBI_GenBank
Match: gi|585112048|gb|EWM29494.1| (hypothetical protein Naga_100287g1 [Nannochloropsis gaditana])

HSP 1 Score: 175.252 bits (443), Expect = 1.314e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 
Query:    1 MSAMVRSSYIGRDGGNRDGTGIVSPCKASQGASEIRETSSVQDFCTGVEQRGHEENLRRSVLGTHSVKEKAEVERLPECRRLENAG 86
            MSAMVRSSYIGRDGGNRDGTGIVSPCKASQGASEIRETSSVQDFCTGVEQRGHEENLRRSVLGTHSVKEKAEVERLPECRRLENAG
Sbjct:    1 MSAMVRSSYIGRDGGNRDGTGIVSPCKASQGASEIRETSSVQDFCTGVEQRGHEENLRRSVLGTHSVKEKAEVERLPECRRLENAG 86
The following BLAST results are available for this feature:
BLAST of EWM29494.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112048|gb|EWM29494.1|1.314e-55100.00hypothetical protein Naga_100287g1 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1181rna1181Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications