EWM29505.1, cds1169 (CDS) Nannochloropsis gaditana

Overview
NameEWM29505.1
Unique Namecds1169
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1389823..1390152 +
Alignment locationCM002456.1:1390226..1391153 +
Alignment locationCM002456.1:1391436..1391464 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29505.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100601g1.6984.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1389823..1390152 +
CM002456.1supercontigCM002456.1:1390226..1391153 +
CM002456.1supercontigCM002456.1:1391436..1391464 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Homology
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|585112063|gb|EWM29505.1| (hypothetical protein Naga_100601g1 [Nannochloropsis gaditana])

HSP 1 Score: 881.708 bits (2277), Expect = 0.000e+0
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0
Query:    1 MISASYLDAMRNDYKICPPKLKEAFALFNTTTLFPHIPRRTRTNNALSNHIPISMANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVVSDILPPLGNRSLCARLRPLFPLPIPLLDRIFYVFFSSCLLLSGPFGPTPSARSLFASVVCPRNEPRRGVAVPTRGPIPCCSLLLRARQHMAVRGRAGLVARTKQPPRPRLLGRRGLCKNWHRF 428
            MISASYLDAMRNDYKICPPKLKEAFALFNTTTLFPHIPRRTRTNNALSNHIPISMANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVVSDILPPLGNRSLCARLRPLFPLPIPLLDRIFYVFFSSCLLLSGPFGPTPSARSLFASVVCPRNEPRRGVAVPTRGPIPCCSLLLRARQHMAVRGRAGLVARTKQPPRPRLLGRRGLCKNWHRF
Sbjct:    1 MISASYLDAMRNDYKICPPKLKEAFALFNTTTLFPHIPRRTRTNNALSNHIPISMANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVVSDILPPLGNRSLCARLRPLFPLPIPLLDRIFYVFFSSCLLLSGPFGPTPSARSLFASVVCPRNEPRRGVAVPTRGPIPCCSLLLRARQHMAVRGRAGLVARTKQPPRPRLLGRRGLCKNWHRF 428          
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|553190868|ref|XP_005855281.1| (violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526] >gi|422293782|gb|EKU21082.1| violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 500.36 bits (1287), Expect = 8.024e-175
Identity = 242/251 (96.41%), Postives = 243/251 (96.81%), Query Frame = 0
Query:   55 MANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVV 305
            MANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFP PQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQG    E  R +
Sbjct:    1 MANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPIPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGMSHGEEWRFL 251          
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|1207987541|ref|XP_021343544.1| (violaxanthin de-epoxidase, chloroplastic-like [Mizuhopecten yessoensis])

HSP 1 Score: 68.9366 bits (167), Expect = 9.838e-10
Identity = 46/181 (25.41%), Postives = 85/181 (46.96%), Query Frame = 0
Query:  127 MTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLACRDTHPAFPTPQ-NVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWL-YTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRV 304
            M +C D +  C+ D  CR+AL+C++ C +         + Q C  DC+ +YE++  D    C F  + CI +       R T P  P    +   ++G+W+   G N  +DC+ CQ  +FS  N S+ +    ++   T++G ++   +            TA+  N ++QG  E ++ ++
Sbjct:    1 MVHCADESKNCMLDPDCRSALACITGCGT---------KNQTCMFDCLYSYEDDVFDTFMKCAFTEYKCITMVSPDPDFRCTPPHLPLKTLSRQQLKGSWYIVMGLNPNFDCFDCQVTTFSLSNTSNTISVNERFEVHTIDGKLKHKLVN----------ETAVQNNASFQGLLEYKSMQM 162          
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|1210525223|dbj|GAX15982.1| (hypothetical protein FisN_22Hh163 [Fistulifera solaris])

HSP 1 Score: 70.0922 bits (170), Expect = 2.707e-9
Identity = 46/144 (31.94%), Postives = 67/144 (46.53%), Query Frame = 0
Query:  109 SADLPSSLAKTEANTTCIMTYCTDAALACVKDQA-CRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLA--CRDTHPAFPTPQNVT----DMEGAWWATWGKNAVYDCYPCQRLSF 244
            SA   S L  +  + TC++  C+    AC+ D A CR  L+C + C  L D++        C   C+  Y N+ LD +  C  + H+CI +  +P         P  P P  +      +EG+W+   G N  YDCY CQR SF
Sbjct:  103 SAKYGSGLDTSLVDQTCLVNQCSAQTTACLVDDADCRKGLTCTAKC--LGDNA--------CITGCMARYGNQNLDNLLKCTIEDHECIKVAILPGGGDAYGNEPPAPAPTVLNFDPRTLEGSWYKVIGYNPNYDCYACQRNSF 236          
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|1210529945|dbj|GAX11478.1| (hypothetical protein FisN_22Lh163 [Fistulifera solaris])

HSP 1 Score: 70.0922 bits (170), Expect = 2.731e-9
Identity = 46/144 (31.94%), Postives = 67/144 (46.53%), Query Frame = 0
Query:  109 SADLPSSLAKTEANTTCIMTYCTDAALACVKDQA-CRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLA--CRDTHPAFPTPQNVT----DMEGAWWATWGKNAVYDCYPCQRLSF 244
            SA   S L  +  + TC++  C+    AC+ D A CR  L+C + C  L D++        C   C+  Y N+ LD +  C  + H+CI +  +P         P  P P  +      +EG+W+   G N  YDCY CQR SF
Sbjct:  103 SAKYGSGLDTSLVDQTCLVNQCSAQTTACLIDDADCRKGLTCTAKC--LGDNA--------CITGCMARYGNQNLDNLLKCTIEDHECIKVAILPGGGDAYGNEPPAPAPTVLNFDPRTLEGSWYKVIGYNPNYDCYACQRNSF 236          
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|224012337|ref|XP_002294821.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969260|gb|EED87601.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.1662 bits (165), Expect = 1.320e-8
Identity = 43/132 (32.58%), Postives = 63/132 (47.73%), Query Frame = 0
Query:  122 NTTCIMTYCTDAALACVKDQ-ACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIP----LACRDTHPAFPTPQ--NVTDMEGAWWATWGKNAVYDCYPCQRLSFS 245
            +  C++  C   A AC++D   CR  L+C + C  L D++        C   C   Y NE LD +  C  + H+CI +  +     +  R+     PT Q  ++  MEG W+   G N  YDCY CQR +FS
Sbjct:  168 DKDCLVNQCQVQAKACLQDDPDCRKGLTCTAKC--LGDNA--------CITGCFARYGNENLDELLKCTIEDHECIKVAILEGGGDVLGREPKSPAPTVQGFDLASMEGTWYKVAGYNPNYDCYACQRNTFS 289          
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|873230092|emb|CEM11601.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 65.4698 bits (158), Expect = 9.767e-8
Identity = 60/191 (31.41%), Postives = 86/191 (45.03%), Query Frame = 0
Query:  110 ADLP---SSLAKTEANT---TCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALT-PIPLACR----DTHPAFP-TPQNVTDMEGAWWA----TW----GKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGV----RAYELQAA 275
            AD+P   S L   E  +    C+ T C D  + C+K  ACR AL CL+ C  L D        Q CT  C+VT+E+ A +A + C    H+C+  + PIP+  R     T    P T ++  D+   W      +W    GKN  YD +P Q   F     S++ Y   +   T +G V    R Y ++ A
Sbjct:  287 ADIPLVKSQLGMKEMGSGVLKCMWTNCQDQIIECMKSPACRQALFCLTNC-PLND--------QVCTYRCIVTHESPAFEAFSLCILQKHNCLNNSAPIPVYPRPEPLRTFKGKPLTYESAEDIYVGWLGQDPWSWKVVAGKNPAYDFFPNQHQIFYRGKRSAFWYDPVFRVTTYDGRVVWRRRHYRVKRA 468          
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|397601773|gb|EJK57995.1| (hypothetical protein THAOC_21914 [Thalassiosira oceanica])

HSP 1 Score: 62.7734 bits (151), Expect = 6.205e-7
Identity = 53/202 (26.24%), Postives = 92/202 (45.54%), Query Frame = 0
Query:   55 MANPVQSFFILFAIISVCWTSVADAGGAKV---NNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQ-ACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLAC----RDTHPAFPTPQN--VTDMEGAWWATWGKNAVYDCYPCQRLSFS 245
            + +PVQ   +   + +VC T    AG + +   N + P +  +   A ++ E D + +      L  +  +  C++  C+  A AC++D   CR  L+C + C  + D++        C   C   Y ++ LD +  C  + ++CI +  +        ++     PT QN  +  MEG W+   G N  YDCY CQR +FS
Sbjct:  107 LRDPVQKAALEKRVATVCTTVGFTAGFSALFLTNPLLPHLPYSQSYARVNAE-DELYAKYGGKGLDTSLVDKDCLVNKCSVQAKACLQDDPDCRKGLTCTAKC--MGDNA--------CITGCFARYGDQNLDNLLKCTIEDNECIKVAILDGGADQPGQEPRAPGPTVQNFDLKTMEGTWYKVAGFNPNYDCYACQRNTFS 297          
The following BLAST results are available for this feature:
BLAST of EWM29505.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585112063|gb|EWM29505.1|0.000e+0100.00hypothetical protein Naga_100601g1 [Nannochloropsi... [more]
gi|553190868|ref|XP_005855281.1|8.024e-17596.41violaxanthin de-epoxidase [Nannochloropsis gaditan... [more]
gi|1207987541|ref|XP_021343544.1|9.838e-1025.41violaxanthin de-epoxidase, chloroplastic-like [Miz... [more]
gi|1210525223|dbj|GAX15982.1|2.707e-931.94hypothetical protein FisN_22Hh163 [Fistulifera sol... [more]
gi|1210529945|dbj|GAX11478.1|2.731e-931.94hypothetical protein FisN_22Lh163 [Fistulifera sol... [more]
gi|224012337|ref|XP_002294821.1|1.320e-832.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|873230092|emb|CEM11601.1|9.767e-831.41unnamed protein product [Vitrella brassicaformis C... [more]
gi|397601773|gb|EJK57995.1|6.205e-726.24hypothetical protein THAOC_21914 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1170rna1170Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications