EWM29505.1, cds1169 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|585112063|gb|EWM29505.1| (hypothetical protein Naga_100601g1 [Nannochloropsis gaditana]) HSP 1 Score: 881.708 bits (2277), Expect = 0.000e+0 Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0 Query: 1 MISASYLDAMRNDYKICPPKLKEAFALFNTTTLFPHIPRRTRTNNALSNHIPISMANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVVSDILPPLGNRSLCARLRPLFPLPIPLLDRIFYVFFSSCLLLSGPFGPTPSARSLFASVVCPRNEPRRGVAVPTRGPIPCCSLLLRARQHMAVRGRAGLVARTKQPPRPRLLGRRGLCKNWHRF 428 MISASYLDAMRNDYKICPPKLKEAFALFNTTTLFPHIPRRTRTNNALSNHIPISMANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVVSDILPPLGNRSLCARLRPLFPLPIPLLDRIFYVFFSSCLLLSGPFGPTPSARSLFASVVCPRNEPRRGVAVPTRGPIPCCSLLLRARQHMAVRGRAGLVARTKQPPRPRLLGRRGLCKNWHRF Sbjct: 1 MISASYLDAMRNDYKICPPKLKEAFALFNTTTLFPHIPRRTRTNNALSNHIPISMANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVVSDILPPLGNRSLCARLRPLFPLPIPLLDRIFYVFFSSCLLLSGPFGPTPSARSLFASVVCPRNEPRRGVAVPTRGPIPCCSLLLRARQHMAVRGRAGLVARTKQPPRPRLLGRRGLCKNWHRF 428
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|553190868|ref|XP_005855281.1| (violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526] >gi|422293782|gb|EKU21082.1| violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 500.36 bits (1287), Expect = 8.024e-175 Identity = 242/251 (96.41%), Postives = 243/251 (96.81%), Query Frame = 0 Query: 55 MANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRVV 305 MANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFP PQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQG E R + Sbjct: 1 MANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPIPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGMSHGEEWRFL 251
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|1207987541|ref|XP_021343544.1| (violaxanthin de-epoxidase, chloroplastic-like [Mizuhopecten yessoensis]) HSP 1 Score: 68.9366 bits (167), Expect = 9.838e-10 Identity = 46/181 (25.41%), Postives = 85/181 (46.96%), Query Frame = 0 Query: 127 MTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLACRDTHPAFPTPQ-NVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWL-YTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARRV 304 M +C D + C+ D CR+AL+C++ C + + Q C DC+ +YE++ D C F + CI + R T P P + ++G+W+ G N +DC+ CQ +FS N S+ + ++ T++G ++ + TA+ N ++QG E ++ ++ Sbjct: 1 MVHCADESKNCMLDPDCRSALACITGCGT---------KNQTCMFDCLYSYEDDVFDTFMKCAFTEYKCITMVSPDPDFRCTPPHLPLKTLSRQQLKGSWYIVMGLNPNFDCFDCQVTTFSLSNTSNTISVNERFEVHTIDGKLKHKLVN----------ETAVQNNASFQGLLEYKSMQM 162
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|1210525223|dbj|GAX15982.1| (hypothetical protein FisN_22Hh163 [Fistulifera solaris]) HSP 1 Score: 70.0922 bits (170), Expect = 2.707e-9 Identity = 46/144 (31.94%), Postives = 67/144 (46.53%), Query Frame = 0 Query: 109 SADLPSSLAKTEANTTCIMTYCTDAALACVKDQA-CRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLA--CRDTHPAFPTPQNVT----DMEGAWWATWGKNAVYDCYPCQRLSF 244 SA S L + + TC++ C+ AC+ D A CR L+C + C L D++ C C+ Y N+ LD + C + H+CI + +P P P P + +EG+W+ G N YDCY CQR SF Sbjct: 103 SAKYGSGLDTSLVDQTCLVNQCSAQTTACLVDDADCRKGLTCTAKC--LGDNA--------CITGCMARYGNQNLDNLLKCTIEDHECIKVAILPGGGDAYGNEPPAPAPTVLNFDPRTLEGSWYKVIGYNPNYDCYACQRNSF 236
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|1210529945|dbj|GAX11478.1| (hypothetical protein FisN_22Lh163 [Fistulifera solaris]) HSP 1 Score: 70.0922 bits (170), Expect = 2.731e-9 Identity = 46/144 (31.94%), Postives = 67/144 (46.53%), Query Frame = 0 Query: 109 SADLPSSLAKTEANTTCIMTYCTDAALACVKDQA-CRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLA--CRDTHPAFPTPQNVT----DMEGAWWATWGKNAVYDCYPCQRLSF 244 SA S L + + TC++ C+ AC+ D A CR L+C + C L D++ C C+ Y N+ LD + C + H+CI + +P P P P + +EG+W+ G N YDCY CQR SF Sbjct: 103 SAKYGSGLDTSLVDQTCLVNQCSAQTTACLIDDADCRKGLTCTAKC--LGDNA--------CITGCMARYGNQNLDNLLKCTIEDHECIKVAILPGGGDAYGNEPPAPAPTVLNFDPRTLEGSWYKVIGYNPNYDCYACQRNSF 236
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|224012337|ref|XP_002294821.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969260|gb|EED87601.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 68.1662 bits (165), Expect = 1.320e-8 Identity = 43/132 (32.58%), Postives = 63/132 (47.73%), Query Frame = 0 Query: 122 NTTCIMTYCTDAALACVKDQ-ACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIP----LACRDTHPAFPTPQ--NVTDMEGAWWATWGKNAVYDCYPCQRLSFS 245 + C++ C A AC++D CR L+C + C L D++ C C Y NE LD + C + H+CI + + + R+ PT Q ++ MEG W+ G N YDCY CQR +FS Sbjct: 168 DKDCLVNQCQVQAKACLQDDPDCRKGLTCTAKC--LGDNA--------CITGCFARYGNENLDELLKCTIEDHECIKVAILEGGGDVLGREPKSPAPTVQGFDLASMEGTWYKVAGYNPNYDCYACQRNTFS 289
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|873230092|emb|CEM11601.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 65.4698 bits (158), Expect = 9.767e-8 Identity = 60/191 (31.41%), Postives = 86/191 (45.03%), Query Frame = 0 Query: 110 ADLP---SSLAKTEANT---TCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALT-PIPLACR----DTHPAFP-TPQNVTDMEGAWWA----TW----GKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGV----RAYELQAA 275 AD+P S L E + C+ T C D + C+K ACR AL CL+ C L D Q CT C+VT+E+ A +A + C H+C+ + PIP+ R T P T ++ D+ W +W GKN YD +P Q F S++ Y + T +G V R Y ++ A Sbjct: 287 ADIPLVKSQLGMKEMGSGVLKCMWTNCQDQIIECMKSPACRQALFCLTNC-PLND--------QVCTYRCIVTHESPAFEAFSLCILQKHNCLNNSAPIPVYPRPEPLRTFKGKPLTYESAEDIYVGWLGQDPWSWKVVAGKNPAYDFFPNQHQIFYRGKRSAFWYDPVFRVTTYDGRVVWRRRHYRVKRA 468
BLAST of EWM29505.1 vs. NCBI_GenBank
Match: gi|397601773|gb|EJK57995.1| (hypothetical protein THAOC_21914 [Thalassiosira oceanica]) HSP 1 Score: 62.7734 bits (151), Expect = 6.205e-7 Identity = 53/202 (26.24%), Postives = 92/202 (45.54%), Query Frame = 0 Query: 55 MANPVQSFFILFAIISVCWTSVADAGGAKV---NNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQ-ACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGC-FDSHDCIALTPIPLAC----RDTHPAFPTPQN--VTDMEGAWWATWGKNAVYDCYPCQRLSFS 245 + +PVQ + + +VC T AG + + N + P + + A ++ E D + + L + + C++ C+ A AC++D CR L+C + C + D++ C C Y ++ LD + C + ++CI + + ++ PT QN + MEG W+ G N YDCY CQR +FS Sbjct: 107 LRDPVQKAALEKRVATVCTTVGFTAGFSALFLTNPLLPHLPYSQSYARVNAE-DELYAKYGGKGLDTSLVDKDCLVNKCSVQAKACLQDDPDCRKGLTCTAKC--MGDNA--------CITGCFARYGDQNLDNLLKCTIEDNECIKVAILDGGADQPGQEPRAPGPTVQNFDLKTMEGTWYKVAGFNPNYDCYACQRNTFS 297 The following BLAST results are available for this feature:
BLAST of EWM29505.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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