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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100601g1.6984.mrna |
| Orig protein id | gnl|cribi|Naga_100601g1.6984 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1389629..1392263 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1170 ID=rna1170|Name=rna1170|organism=Nannochloropsis gaditana|type=mRNA|length=2227bp
AGGCTATGTATCAAATACCGAATTGTCCGTACCTTTTAATTAAAGTAATC
ACATGATGTGTCTTATTACAGGACAAGCAAGTGGAAGCATACATAGAGTA
CAAATAACGCATGTATAGCAACCTAAAAGTACGTCAGCATCAATAGTACT
GACTGCCGCGCATTGTTTCTACTCATGAGTGACTCTTTTGGCACTTGCAC
ACGACAATCGTCAACCCGTAAGCCTCCACCCGCAATGTCGAGAAAAGGCG
AGGTAAGCCACTACAATCGGCAGCGCAGGCGCCTGAGATGGCTAGTCTCA
GGCAGTTTAGTTACATTACTCTTGACATTGAACATCATTTCACTCCGGGG
GCGGCGCAGCGATGTAATGGCCTCGATTGAAACTGCGAGCAACAATGAAC
ATCTGGCATTGCCTTCTTCGGCGGTTTCTGATAGCAAAATACTTAGTGAT
GACCTTCCACAAGAACGAGACATGCTTATTAGAGGTGTGAGTATAGAAAA
ATCCACAACGCCTGAATCTAGACCGTCACCTGAATCAAGCTTCGGGAGCC
AGGAGGATCTGGAGCTAGCTTTGCGAATCACGAAGGAGAAAATTCTTCAC
GAAAAAGTGGAGCGACAAAAGCAGCCAAAGAGAAACGAGCAAAACGAAGA
AAATGACCCGGCAAATTCCATCCAAACTGCAAACTCAAAAGAGAAAGCGT
CACTTCTAGGACCGTTCGAGGCAGAAGGAGGAAACCCAGCCATTCCGTTG
CTTCAACCTGCAGGCGAGAAAGCCACCCGTCCTCCAATCTCCGGTCGACC
TCCCTTGCATCGTCCTGCCTCCGAGACGCATGTACAAAAAATCATACTAA
CCATATCCAGCATCGACCGAGGTGAGCGCATCTCCGACCTGTGGGCCGGG
GATAAGCTGCTGACAATCCTAAAGACCCTGGTCAGTGTCCGGGAACTTTG
CGAGCGTGGCTTTGATCTGACCGTGTGGTTCATTGCCGCCTGGAAGATTT
CGCAACAAAGAGAGTTGATAGAGGAAGCTTTGTTTTGTCAGCGGACGCAG
GAGCCTGTCCAAATTCGGTATTGGGATCACTTTCCTCCCGATGTTGGCGG
CTTCTTGAGCTCCCGCCATCGGCTCGCGATGGCGAAAGTGATGGATGAGT
ACGACTTCTTCATTTCCATCGAGGACGATATCTACCTCACCCCGTCAATG
GTGGATGCGTATGTGCATGCAAGCGGCCGGCTTGCGCTCACCACGGACGC
GTACGCCCGCGAGCATCACATGGTGGGCTTCTCCCGAAAAGAACACGACT
TGCTACGAGAGGACCGGGCTTGGGCGCTGTGGGAGACACTGGCGGTGGAT
TACCATGTGTTGCAACTCCCCGGAGCAGGTTGGTGGGCACAAGTGACGGG
AAATCCCCATCAGGCCATGTGGATGGCGACAAGGGAACAGATTTACAATT
TTGAAAGCCGATGCGAGAGCGGCTTTTTGAAATTGAAACATCCTAGGGAA
GCAGAATGGGTGGAGTTTCACAGCGGAGCCCTGCAAGTACGTCACATGTC
GGGAGCGTGGCGGATGTTTTGAATCATACAACATTTCCCCCGAATCTCAT
TATCATGCACACAATACAAAATTTTCGTTCCTCCCCTTTAGATATTTATG
GGCCCCGAAGAGTGTGAGGATATCCGCAAAGTTCTTCCGATTGACGATGA
TATAGGGGGCTTCGAATCTTTCACGGTCTGGCACATGACGGACTCGAAAC
TACGAGTCATGGGAGAGGGCGTGGCACTGGTGAAGGATATTGTAACCCAC
TTGAATGCGGAAAAGGCCTGGAAAAAAGGAAAGATAAGAGGCGCACGAAG
AAAGAATTAAGAGCGAGTTCTGAAAGGACACGCGCGAAATCCATTCCTGA
AGGCAAACTTCAAACAATGACATGTGCAGCGAAAGACATACCGGTCGTCG
TCAGAGGAAGGAGAGACATTGACTACTTCCTGCCACGGCATGGGAGAGGG
AAAGGATTTGATTGCGGGGATCAAGAAACAACGTCTATGACTGCTAATTG
TGCAACCGGGAGGAAACGTCCGCTCTCTGGTCTGAGGGCGCCCTGTCTTG
ACAACGGTCAAAGTTGATATGGGCCTGGGAGTCGAAGACCTAGTACTAAT
CAAAGAAATGTATAGAAAGTCACCGAAGCCAAAGCATTCTCATAATTAAA
GCACGAAGGCCTTGCGAGTCCCCCTCC back to topprotein sequence of rna1170 >rna1170-protein ID=rna1170-protein|Name=rna1170|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MISASYLDAMRNDYKICPPKLKEAFALFNTTTLFPHIPRRTRTNNALSNH
IPISMANPVQSFFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAM
SHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCL
STCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPI
PLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNAS
SWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESE
ARRVVSDILPPLGNRSLCARLRPLFPLPIPLLDRIFYVFFSSCLLLSGPF
GPTPSARSLFASVVCPRNEPRRGVAVPTRGPIPCCSLLLRARQHMAVRGR
AGLVARTKQPPRPRLLGRRGLCKNWHRF back to topmRNA from alignment at CM002456.1:1389629..1392263+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1170 ID=rna1170|Name=rna1170|organism=Nannochloropsis gaditana|type=mRNA|length=2635bp|location=Sequence derived from alignment at CM002456.1:1389629..1392263+ (Nannochloropsis gaditana)
TGGCTTGCCAAGGACCCTGGGTGCGTTAAATATCGTACCGCCAAGCATCA
CCCACACTCGTGCCATCGTCAGGCGCGTGGTAGCGTTTTACATATCCTTG
AATGGCCTGGAGGGATGAATATCACAAGATAACTCGTCTTTTGGTACGGA
GCATGCTGTCAAATTGCCCGTGTACTACTTGAACGCTTTCGAAAATGATC
TCAGCCTCTTACTTAGATGCTATGAGGAATGATTATAAAATTTGCCCGCC
AAAACTCAAAGAAGCTTTTGCTTTGTTCAATACTACTACGCTCTTCCCCC
ATATTCCACGCAGGACGAGAACAAACAACGCTCTTTCCAACCACATACCC
ATTTCAATGGCCAACCCTGTTCAAAGCTTTTTTATTCTTTTTGCTATTAT
CAGTGTCTGTTGGACCTCAGTGGCCGACGCAGGAGGAGCGAAAGTCAACA
ATGTCACGCCCTCAATGGCGCGCACTATCTTGATCGCAGCTATGTCTCAT
GAGATGGACACAGTGGCATCCGCGGTAAGCTTTCATACATGTTCAACTCA
ATTATTATCTTGAAAGTAATCTTGACGACATGTCTATCCCTGCTCAGGAC
CTGCCGTCAAGCCTAGCGAAGACGGAAGCCAACACCACCTGTATCATGAC
ATATTGCACGGACGCGGCTTTGGCTTGTGTGAAGGACCAGGCATGCCGCA
CCGCCCTGTCCTGCCTCTCAACCTGCGACTCATTGGAAGACGATAGTCCC
GACAAGATCGAGCTGCAGAAATGCACGGCAGACTGCGTGGTGACCTATGA
GAACGAGGCCCTGGACGCCGTCAACGGCTGCTTCGACTCTCACGACTGCA
TTGCCCTGAcgcccatccccctcgcGTGCCGGGACACCCATCCTGCCTTT
CCGACCCCACAAAATGTCACGGACATGGAAGGGGCGTGGTGGGCGACTTG
GGGGAAGAACGCTGTGTACGACTGTTATCCGTGCCAACGCCTGTCGTTCT
CCCCGCTGAACGCCTCGTCCTGGTTGTACACGTCCAAGTACTTGACCCCC
AccttggagggcggggtgcgGGCCTACGAGCTTCAGGCAGCATTTCCTTG
GCCGGCGGACGGTATGGCGACAGCCATTGCCTTCAATTACACCTACCAAG
GTagggaagagagcgaggcaCGGAGGGTTGTCAGCGAtatcctcccgccc
ctggGGAACCGCTCTCTGTGTGCTCGTCTtcgccccctctttcctctccc
tatCCCCCTGCTAGATCGCATCTTTTatgttttcttttcttcctgtcttc
tcTTATCCGGACCATTTGGCCCCACCCCGTCTGCACGCTCACTTTTCGCG
TCTGTGGTCTGCCCCAGGAATGAGCCACGGAGAGGAGTGGCGGTTCCTAC
ACGTGGCCCCATCCCTTGTTGTTCTTTACTACTGCGGGCAAGGCAACACA
TGGCAgtacgagggagggctggtCTTGTCGCGAGAACGAAGCAGCCCCCC
CGACCACGTCTCCTTGGCCGCAGAGGTAAGAgcctgctttctttcttggg
gtggaggagcttgTCGTGGAGTGTGCATGCACTGTAGTGTTTTCGGGGTC
GGCATTTTTCGGTCTTTGCATGTTGTCTTTCGCCTGCTTGGGTCGCAAAT
GCCCTCGGCGGGCCTTTGGTCACTCTTGACTGTTCCTGTTCTCTTTTCCT
GTGTGGATGGCAAGAACCGTATCCAAAACCTGAAAAACAACACGTTTGTC
GCCGCATTTCACTCCTTTATTTGcctcccccacttccctcgtcttccttg
gCGTCAGGCCTTTGCAAAAATTGGCATAGATTTTGAGGAGGAGTTTTGCG
AGCTGCAACCCAACCGCCCATGTCCTGCCCTTTAAGCGAGCATTGCGAGC
CCTTGGAGCCCAGCATCCTGAGAGATATTGAGAGAGCCTAAGCTGGAGCA
TGCTTGGAAGGGCGGTAGAGCCACGGGGGTGTCTCCTTGTTACCCGGTGT
ACAGACAAGGCTTGAGGAATATCGGAATGGTAGCAAAGGGTTAAGGAACA
AATCATCCCGGGATATGCCCCTTAGATATTGTCTAtattcctttcttctt
caaagGATACGCACGGCTGTTGGCTTTCTCGTGCTCATATAGCAGTGTGT
CACCCTCTTCTTTAAATGGGAGACTGTCCTTGTCTCTCGCCTAGCCTTCG
AGATTTTCTGAAGCGAATAATTCAATGAAGGGGCTATCCACAAAGCTTCA
GCAATGGCTTTGCTCCAATATACTTCTGATTTCTCAACACGCTGTATACT
TTCTGAAATTCCTCGCAGGAGACGTGAAGTTCAAGATCAAAAACTCAAAA
ATTTCCTCCAAAAATTCAGTCTCTAGATGTACTCAATTTGGTTTTACATG
AATTTGTTGAAATGTAAAAATCAAAAAGCTGAGGCGCATGTCATAGACGT
CAGGCACGAGAGTCACCATCCGAGGCACTCCTATCAAAAATTGAGCGGTC
AACCTTCGCGTGCCTAGTCCTGGTCTAGTTATAGCACATCGTACACTACC
TGTCATGATCCTACTTGAAAACTTCGACATTTGCTTGATTGCAACGACGC
GTTTTATATATATCTTCACCTACTAataacctccc back to topCoding sequence (CDS) from alignment at CM002456.1:1389629..1392263+ >rna1170 ID=rna1170|Name=rna1170|organism=Nannochloropsis gaditana|type=CDS|length=3861bp|location=Sequence derived from alignment at CM002456.1:1389629..1392263+ (Nannochloropsis gaditana)
ATGATCTCAGCCTCTTACTTAGATGCTATGAGGAATGATTATAAAATTTG
CCCGCCAAAACTCAAAGAAGCTTTTGCTTTGTTCAATACTACTACGCTCT
TCCCCCATATTCCACGCAGGACGAGAACAAACAACGCTCTTTCCAACCAC
ATACCCATTTCAATGGCCAACCCTGTTCAAAGCTTTTTTATTCTTTTTGC
TATTATCAGTGTCTGTTGGACCTCAGTGGCCGACGCAGGAGGAGCGAAAG
TCAACAATGTCACGCCCTCAATGGCGCGCACTATCTTGATCGCAGCTATG
TCTCATGAGATGGACACAGTGGCATCCGCGGACCTGCCGTCAAGCCTAGC
GAAGACGGAAGCCAACACCACCTGTATCATGACATATTGCACGGACGCGG
CTTTGGCTTGTGTGAAGGACCAGGCATGCCGCACCGCCCTGTCCTGCCTC
TCAACCTGCGACTCATTGGAAGACGATAGTCCCGACAAGATCGAGCTGCA
GAAATGCACGGCAGACTGCGTGGTGACCTATGAGAACGAGGCCCTGGACG
CCGTCAACGGCTGCTTCGACTCTCACGACTGCATTGCCCTGAcgcccatc
cccctcgcGTGCCGGGACACCCATCCTGCCTTTCCGACCCCACAAAATGT
CACGGACATGGAAGGGGCGTGGTGGGCGACTTGGGGGAAGAACGCTGTGT
ACGACTGTTATCCGTGCCAACGCCTGTCGTTCTCCCCGCTGAACGCCTCG
TCCTGGTTGTACACGTCCAAGTACTTGACCCCCAccttggagggcggggt
gcgGGCCTACGAGCTTCAGGCAGCATTTCCTTGGCCGGCGGACGGTATGG
CGACAGCCATTGCCTTCAATTACACCTACCAAGGTagggaagagagcgag
gcaCGGAGGGTTGTCAGCGAtatcctcccgcccctggGGAACCGCTCTCT
GTGTGCTCGTCTtcgccccctctttcctctccctatCCCCCTGCTAGATC
GCATCTTTTatgttttcttttcttcctgtcttctcTTATCCGGACCATTT
GGCCCCACCCCGTCTGCACGCTCACTTTTCGCGTCTGTGGTCTGCCCCAG
GAATGAGCCACGGAGAGGAGTGGCGGTTCCTACACGTGGCCCCATCCCTT
GTTGTTCTTTACTACTGCGGGCAAGGCAACACATGGCAgtacgagggagg
gctggtCTTGTCGCGAGAACGAAGCAGCCCCCCCGACCACGTCTCCTTGG
CCGCAGAGGCCTTTGCAAAAATTGGCATAGATTTTGAATGATCTCAGCCT
CTTACTTAGATGCTATGAGGAATGATTATAAAATTTGCCCGCCAAAACTC
AAAGAAGCTTTTGCTTTGTTCAATACTACTACGCTCTTCCCCCATATTCC
ACGCAGGACGAGAACAAACAACGCTCTTTCCAACCACATACCCATTTCAA
TGGCCAACCCTGTTCAAAGCTTTTTTATTCTTTTTGCTATTATCAGTGTC
TGTTGGACCTCAGTGGCCGACGCAGGAGGAGCGAAAGTCAACAATGTCAC
GCCCTCAATGGCGCGCACTATCTTGATCGCAGCTATGTCTCATGAGATGG
ACACAGTGGCATCCGCGGACCTGCCGTCAAGCCTAGCGAAGACGGAAGCC
AACACCACCTGTATCATGACATATTGCACGGACGCGGCTTTGGCTTGTGT
GAAGGACCAGGCATGCCGCACCGCCCTGTCCTGCCTCTCAACCTGCGACT
CATTGGAAGACGATAGTCCCGACAAGATCGAGCTGCAGAAATGCACGGCA
GACTGCGTGGTGACCTATGAGAACGAGGCCCTGGACGCCGTCAACGGCTG
CTTCGACTCTCACGACTGCATTGCCCTGAcgcccatccccctcgcGTGCC
GGGACACCCATCCTGCCTTTCCGACCCCACAAAATGTCACGGACATGGAA
GGGGCGTGGTGGGCGACTTGGGGGAAGAACGCTGTGTACGACTGTTATCC
GTGCCAACGCCTGTCGTTCTCCCCGCTGAACGCCTCGTCCTGGTTGTACA
CGTCCAAGTACTTGACCCCCAccttggagggcggggtgcgGGCCTACGAG
CTTCAGGCAGCATTTCCTTGGCCGGCGGACGGTATGGCGACAGCCATTGC
CTTCAATTACACCTACCAAGGTagggaagagagcgaggcaCGGAGGGTTG
TCAGCGAtatcctcccgcccctggGGAACCGCTCTCTGTGTGCTCGTCTt
cgccccctctttcctctccctatCCCCCTGCTAGATCGCATCTTTTatgt
tttcttttcttcctgtcttctcTTATCCGGACCATTTGGCCCCACCCCGT
CTGCACGCTCACTTTTCGCGTCTGTGGTCTGCCCCAGGAATGAGCCACGG
AGAGGAGTGGCGGTTCCTACACGTGGCCCCATCCCTTGTTGTTCTTTACT
ACTGCGGGCAAGGCAACACATGGCAgtacgagggagggctggtCTTGTCG
CGAGAACGAAGCAGCCCCCCCGACCACGTCTCCTTGGCCGCAGAGGCCTT
TGCAAAAATTGGCATAGATTTTGAATGATCTCAGCCTCTTACTTAGATGC
TATGAGGAATGATTATAAAATTTGCCCGCCAAAACTCAAAGAAGCTTTTG
CTTTGTTCAATACTACTACGCTCTTCCCCCATATTCCACGCAGGACGAGA
ACAAACAACGCTCTTTCCAACCACATACCCATTTCAATGGCCAACCCTGT
TCAAAGCTTTTTTATTCTTTTTGCTATTATCAGTGTCTGTTGGACCTCAG
TGGCCGACGCAGGAGGAGCGAAAGTCAACAATGTCACGCCCTCAATGGCG
CGCACTATCTTGATCGCAGCTATGTCTCATGAGATGGACACAGTGGCATC
CGCGGACCTGCCGTCAAGCCTAGCGAAGACGGAAGCCAACACCACCTGTA
TCATGACATATTGCACGGACGCGGCTTTGGCTTGTGTGAAGGACCAGGCA
TGCCGCACCGCCCTGTCCTGCCTCTCAACCTGCGACTCATTGGAAGACGA
TAGTCCCGACAAGATCGAGCTGCAGAAATGCACGGCAGACTGCGTGGTGA
CCTATGAGAACGAGGCCCTGGACGCCGTCAACGGCTGCTTCGACTCTCAC
GACTGCATTGCCCTGAcgcccatccccctcgcGTGCCGGGACACCCATCC
TGCCTTTCCGACCCCACAAAATGTCACGGACATGGAAGGGGCGTGGTGGG
CGACTTGGGGGAAGAACGCTGTGTACGACTGTTATCCGTGCCAACGCCTG
TCGTTCTCCCCGCTGAACGCCTCGTCCTGGTTGTACACGTCCAAGTACTT
GACCCCCAccttggagggcggggtgcgGGCCTACGAGCTTCAGGCAGCAT
TTCCTTGGCCGGCGGACGGTATGGCGACAGCCATTGCCTTCAATTACACC
TACCAAGGTagggaagagagcgaggcaCGGAGGGTTGTCAGCGAtatcct
cccgcccctggGGAACCGCTCTCTGTGTGCTCGTCTtcgccccctctttc
ctctccctatCCCCCTGCTAGATCGCATCTTTTatgttttcttttcttcc
tgtcttctcTTATCCGGACCATTTGGCCCCACCCCGTCTGCACGCTCACT
TTTCGCGTCTGTGGTCTGCCCCAGGAATGAGCCACGGAGAGGAGTGGCGG
TTCCTACACGTGGCCCCATCCCTTGTTGTTCTTTACTACTGCGGGCAAGG
CAACACATGGCAgtacgagggagggctggtCTTGTCGCGAGAACGAAGCA
GCCCCCCCGACCACGTCTCCTTGGCCGCAGAGGCCTTTGCAAAAATTGGC
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