EWM29566.1, cds1157 (CDS) Nannochloropsis gaditana

Overview
NameEWM29566.1
Unique Namecds1157
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1351111..1352574 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29566.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g9.8655.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1351111..1352574 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29566.1 vs. NCBI_GenBank
Match: gi|585112137|gb|EWM29566.1| (hypothetical protein Naga_100006g9 [Nannochloropsis gaditana])

HSP 1 Score: 1006.9 bits (2602), Expect = 0.000e+0
Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 0 
Query:    1 MILHKHLPLHLSQSSSEFILNCLARLTPPMTTSEEISLEYYRICCALLHRWYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQVSDDLFAYYLSLKQQRRRRTATKKDHTNGGVDLSFTPLSTSSSRPIKSTASVHETGNAESKRSKNNAVSRWLQAPLSTDNQKASSFNCDHERPYHSLSFSQRPPFRLVHRLHSSPRATSTNKSSVPAARLHNYSTHASPSFLYPQLAMSLKGNSPFDIRSGGQQQQQQQQQALVHPFPITYPTDYGLKVIHHRYQYQVRPFDEPVMLLSSALRARSQEQLQQQPHYGTRTSQSTSPSRQQLTITPSRSTLESTTLTSNCDNASSSLQPCGAVAAILSNMSPSSTSYHDDEKKGQILGSPLNEDTIVQSLGREDTVDGVSVCTLPLKGNETKRNLSRAKDCKDYGAEGFKRHLPIDDARLPLKKRRCHISHKHDDVLAVSVLLGLKMQG 487
            MILHKHLPLHLSQSSSEFILNCLARLTPPMTTSEEISLEYYRICCALLHRWYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQVSDDLFAYYLSLKQQRRRRTATKKDHTNGGVDLSFTPLSTSSSRPIKSTASVHETGNAESKRSKNNAVSRWLQAPLSTDNQKASSFNCDHERPYHSLSFSQRPPFRLVHRLHSSPRATSTNKSSVPAARLHNYSTHASPSFLYPQLAMSLKGNSPFDIRSGGQQQQQQQQQALVHPFPITYPTDYGLKVIHHRYQYQVRPFDEPVMLLSSALRARSQEQLQQQPHYGTRTSQSTSPSRQQLTITPSRSTLESTTLTSNCDNASSSLQPCGAVAAILSNMSPSSTSYHDDEKKGQILGSPLNEDTIVQSLGREDTVDGVSVCTLPLKGNETKRNLSRAKDCKDYGAEGFKRHLPIDDARLPLKKRRCHISHKHDDVLAVSVLLGLKMQG
Sbjct:    1 MILHKHLPLHLSQSSSEFILNCLARLTPPMTTSEEISLEYYRICCALLHRWYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQVSDDLFAYYLSLKQQRRRRTATKKDHTNGGVDLSFTPLSTSSSRPIKSTASVHETGNAESKRSKNNAVSRWLQAPLSTDNQKASSFNCDHERPYHSLSFSQRPPFRLVHRLHSSPRATSTNKSSVPAARLHNYSTHASPSFLYPQLAMSLKGNSPFDIRSGGQQQQQQQQQALVHPFPITYPTDYGLKVIHHRYQYQVRPFDEPVMLLSSALRARSQEQLQQQPHYGTRTSQSTSPSRQQLTITPSRSTLESTTLTSNCDNASSSLQPCGAVAAILSNMSPSSTSYHDDEKKGQILGSPLNEDTIVQSLGREDTVDGVSVCTLPLKGNETKRNLSRAKDCKDYGAEGFKRHLPIDDARLPLKKRRCHISHKHDDVLAVSVLLGLKMQG 487
[Close]
BLAST of EWM29566.1 vs. NCBI_GenBank
Match: gi|585112185|gb|EWM29614.1| (hypothetical protein Naga_100006g7 [Nannochloropsis gaditana])

HSP 1 Score: 119.013 bits (297), Expect = 4.415e-25
Identity = 55/103 (53.40%), Postives = 69/103 (66.99%), Query Frame = 0 
Query:   30 MTTSEEISLEYYRICCALLHRWYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQVSDDLFAYYLSLKQQRRRRTATKKDHTNGGVDL 132
            MT SEE+SL YY +CC LL RW +   NNR D+++AC +SGASY+ELRSILK+LRA Y+ GF  A+K G+  DD + YY S K+  R R  T    T  GV L
Sbjct:    1 MTASEELSLRYYEVCCMLLQRWRYSTQNNREDMNDACIESGASYDELRSILKHLRAKYMAGFNNAQKQGRFIDDFYGYYTSTKRP-RGRPPTAAGGTGNGVKL 102
The following BLAST results are available for this feature:
BLAST of EWM29566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112137|gb|EWM29566.1|0.000e+0100.00hypothetical protein Naga_100006g9 [Nannochloropsi... [more]
gi|585112185|gb|EWM29614.1|4.415e-2553.40hypothetical protein Naga_100006g7 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1158rna1158Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications