rna1158, rna1158 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1158
Unique Name	rna1158
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1677
Alignment location	CM002456.1:1350708..1352942 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g9.8655.mrna
Orig protein id	gnl\|cribi\|Naga_100006g9.8655
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1350708..1352942 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g9	gene1115	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29566.1	cds1157	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1158	rna1158-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1350708..1352942-
coding sequence from alignment at CM002456.1:1350708..1352942-

mRNA sequence

>rna1158 ID=rna1158|Name=rna1158|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp
ATGAAAGATACACCGTGCCTGTCTTCCCTTCCAGCCACGCAGTATTGCTC
CTCCTTTCCCTGGCCTCTGTCCATGATATCCGTCTCTACCCGTCGGGCCC
GCCCCAGCCGACGAGGAGCAAGACTACGTCGCTCTCCCACCCTCATGCCT
ACCTTCCTCCTCCTCCTGCTTGTCGCGCCCAGCGCCACTTTTCGATTTTC
GTTTGCGGCCACCAATTTCCCGAGCGGGACGGCCACAGGAGATGGACGCT
TGGAAGTCTACAACAGTATAAGCCGGGGTGGCTTTTTCTCGGAGACCTGG
GACGTGCACCACAGCAAGAGCAAGATGCGCGTGCGCCAGGTCCCTGGTGA
TGGGTCTTGCCTTTTCCATGCCATTTACGTGGCGTTGGCGTACGCGACAA
ACGGCTCACACCCCCAGGAAGACTACGAGGCGATGTGCAAGGCCGCAGGG
GTGCTCAGACAGACAGCCTTGGATTATCTCTCGGACGATCCCAGTCGATT
GTTGACCGTAACGTACAACCAGGATATGAAAAGCCAGGAGCTCTTGGACA
TGACGAGCAAGGAAATGGGCCTGTCGGCGGAGCAGTACCTGGTCCGCCTG
CGTGACCCGAAGGAATGGGGGGGGGGGCTAGAAATTGTCGCCCTCGCCAA
CGCCCTGGAGCGTCCCATATTTTTGTATGAGCTTAAGCCCGTGGGGTTGC
TCTTCTGGTCAAGGTTTGTATTCAAAAAGATGGTCGAATGCGGGATGCCG
AAGTTCTCGCCCAAAAAGAGCTTGCATATTTTGATAGCTGACTGCAATTT
TCCTGACTGTGCCCCTTACTTCTATAACAAGGCTGGCAATCATTTTCTAG
CCCTGTTTCCTTGTGAAGATGCTTCTACCGTTCCTACGTCCGATAATTCT
GTTCCCGCCCCCTCTGCGGCTCCAGTAGCATCAAGCCTCGAAAATAGTGG
GAGTCACGCATTCGCGAAGTGTCGGGAAAGGCAGAGGCGTGTCCACGGGC
TAAATGGACTCGGGCCAGGATGGCTCGTCTACGAGAGCATAGGTAAAATA
GGATTGTTGAAAAAGGTAAAGAACACTTTGTATAACATGTCACACATTCT
TACGTTCAAAATGCTCCTTGCCAAGTCCCTAGCAACCCAGTCCCTGCGGC
TTCAAGCCTCCATTACGGCCAAGAAAGCTTTTCCTGTACATTTGCTTTCT
ACGGTGCGTGAGACTATTCCATCGCGCCCTTCGCACAAGCAAGTGGTAGC
TGAGGTAGCTGCGACGACCGAGAAGTGGCTTGAGACCGTGACGGGACAGA
AGCCTACTAGCCCCGCTGAAACAGCTGCTCTCTATGCAAAGGATGGTGTG
CTGTGGGCGACCGTTTCTACGGAGCTTCGCGTCAACCCAAAAGAGATCCG
TGATTATTTCGATGTCTTTGCACGCTTGCCCAACTTGAAAGTGTCGGACT
ACAAGCCCTACATTCGTGTGTATGGGGATATCGCGCTTAACGATGGCTAT
TATACTGTGACGTTTGACTCTCCAGAGGGTAAAAAGGTCACTAAAGCCCG
TTATGTCTTTGTGTACAAACGTGATGAGGCCTCGGGAGCTTGGGAGATCA
TCGACCATCATTCGTCTGCCATGCCCGTGGCACCCGCTGGGCTCAAGAAA
GCCACCACTGTAGCCCCGCCCAGCTAA

protein sequence of rna1158

>rna1158-protein ID=rna1158-protein|Name=rna1158|organism=Nannochloropsis gaditana|type=polypeptide|length=487bp
MILHKHLPLHLSQSSSEFILNCLARLTPPMTTSEEISLEYYRICCALLHR
WYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQV
SDDLFAYYLSLKQQRRRRTATKKDHTNGGVDLSFTPLSTSSSRPIKSTAS
VHETGNAESKRSKNNAVSRWLQAPLSTDNQKASSFNCDHERPYHSLSFSQ
RPPFRLVHRLHSSPRATSTNKSSVPAARLHNYSTHASPSFLYPQLAMSLK
GNSPFDIRSGGQQQQQQQQQALVHPFPITYPTDYGLKVIHHRYQYQVRPF
DEPVMLLSSALRARSQEQLQQQPHYGTRTSQSTSPSRQQLTITPSRSTLE
STTLTSNCDNASSSLQPCGAVAAILSNMSPSSTSYHDDEKKGQILGSPLN
EDTIVQSLGREDTVDGVSVCTLPLKGNETKRNLSRAKDCKDYGAEGFKRH
LPIDDARLPLKKRRCHISHKHDDVLAVSVLLGLKMQG

mRNA from alignment at CM002456.1:1350708..1352942-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1158 ID=rna1158|Name=rna1158|organism=Nannochloropsis gaditana|type=mRNA|length=2235bp|location=Sequence derived from alignment at CM002456.1:1350708..1352942- (Nannochloropsis gaditana)
TGTTTTGATCAGATTATTCGCGTCGTGGATTGGGGGATCACGTCTTGACT
GCCCACATTTTGTCTACATAAGCCGTCCTGTACATGGCACCCAAAAGTAT
GTTTGCCAAGAGATATGTGACTTCCCCCTTCCTTCGGATTCCCCCATAGC
TTGCAGTGAGCTGTATATTATGTCCTGTTATATTTGCGAGCATATCTGCC
CTTAACGTGCACGCATATGTCCGTCTATTCATGTATGCAAGGAGCGAGGT
CATGAGTGTCGGGAGATTTATGTGTTTCTTAATACACGACCTTGGCTCAT
TCGAGGCAAAAGTCATATAAGCGCATATTTATAGTCAATCGTCCACGATC
CAGGGCATCTGCTTTTTTATGATCTTACATAAACATCTACCCTTACATCT
CTCGCAGAGCTCATCAGAGTTCATCTTGAATTGCCTTGCACGCCTGACTC
CTCCAATGACGACAAGTGAGGAGATCTCTCTGGAATATTACCGGATTTGC
TGCGCACTGCTACATCGCTGGTATTTCGTTGCACACAACAACCGAAATGA
TATCAGTGAAGCCTGTTCTAAAAGTGGAGCATCTTATGAAGAACTGCGAT
CCATTCTGAAATACCTTCGGGCTCACTATGTGGGTGGTTTTTTGACTGCG
CGCAAGCTGGGACAGGTTTCTGATGATCTGTTCGCCTACTATCTTTCCCT
GAAGCAGCAAAGGCGCCGTCGTACTGCTACAAAAAAAGACCACACGAATG
GTGGTGTAGATCTTTCTTTCACCCCTTTGTCTACGAGCAGCAGCAGACCC
ATCAAATCGACTGCAAGTGTGCATGAAACTGGTAATGCTGAGTCAAAACG
CAGTAAAAATAATGCTGTCAGCCGCTGGCTTCAAGCCCCCCTTTCCACAG
ACAACCAGAAGGCATCTTCTTTCAACTGCGACCATGAGCGGCCTTACCAT
TCACTATCGTTCAGTCAACGCCCACCTTTTCGCCTTGTGCATCGTCTCCA
CTCCTCCCCTCGTGCCACGTCGACAAACAAAAGTAGTGTACCGGCTGCTA
GACTTCATAATTATTCAACGCATGCATCGCCTTCCTTTCTTTACCCTCAA
TTGGCTATGTCTTTGAAAGGCAATAGCCCTTTTGATATTCGTTCAGGCGG
ACAGCAGCAGCAGCAGCAGCAGCAGCAGGCACTGGTTCACCCCTTCCCTA
TTACCTACCCTACTGACTACGGCCTTAAGGTCATTCACCACCGATATCAG
TATCAGGTGCGGCCGTTTGACGAGCCTGTAATGCTCTTATCTTCTGCATT
ACGGGCGAGATCGCAAGAACAGCTGCAACAGCAACCACACTATGGCACGC
GTACGTCTCAAAGCACGTCGCCTTCCAGACAGCAGTTGACCATCACACCG
AGCCGGAGCACTCTTGAAAGCACCACACTGACCTCGAATTGTGACAACGC
GAGCAGCTCACTACAGCCGTGTGGCGCCGTTGCCGCAATTTTATCTAACA
TGTCGCCTTCATCTACGAGCTACCATGACGATGAAAAAAAGGGACAAATT
CTAGGATCCCCACTCAACGAAGATACCATCGTACAGAGCTTGGGCAGAGA
AGACACCGTTGACGGAGTAAGTGTCTGCACTCTCCCGCTCAAAGGCAATG
AGACCAAAAGGAATCTATCGAGAGCGAAAGATTGCAAAGATTATGGAGCT
GAGGGGTTCAAAAGACATCTTCCAATCGATGATGCCCGCTTGCCTTTGAA
AAAGCGTCGCTGCCATATTTCCCACAAGCACGATGACGTCTTAGCGGTCT
CTGTTCTTCTAGGATTAAAGATGCAAGGTTGACGGGGAGTAGATAGCATT
AACGTATACGTGACATGAGACGGAAGAAAAAGTGCATGGAGAAGATCTTA
ACAGTAAGAAATCATTAGAGGACTGTTACGCATGCAACCAGATTGTCAAA
TTGATGAGCTACAAATACCTGCAAATTCGTGGATGTTTACAAGTTGGGGG
TTATGTAGAGTTTACCTGCAGTTTCACATGAAATTTCGAATGAAGTTACA
CATGCATGATACCAAATACACCGATGTTTGACTTTTTTGCGGGCCCACAT
CCAATAGGACAGTATGTCAACTCTTTATCGAGGAAAGAGAGACCTAAGTC
TTATAGAAACAGTGGAAAATGTTGCTCTCTAGTCAGAGGGAGAGCTTGAA
AAGAATAGATACATTTACATTTGTTCGCGCACTTA

Coding sequence (CDS) from alignment at CM002456.1:1350708..1352942-

>rna1158 ID=rna1158|Name=rna1158|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at CM002456.1:1350708..1352942- (Nannochloropsis gaditana)
ATGATCTTACATAAACATCTACCCTTACATCTCTCGCAGAGCTCATCAGA
GTTCATCTTGAATTGCCTTGCACGCCTGACTCCTCCAATGACGACAAGTG
AGGAGATCTCTCTGGAATATTACCGGATTTGCTGCGCACTGCTACATCGC
TGGTATTTCGTTGCACACAACAACCGAAATGATATCAGTGAAGCCTGTTC
TAAAAGTGGAGCATCTTATGAAGAACTGCGATCCATTCTGAAATACCTTC
GGGCTCACTATGTGGGTGGTTTTTTGACTGCGCGCAAGCTGGGACAGGTT
TCTGATGATCTGTTCGCCTACTATCTTTCCCTGAAGCAGCAAAGGCGCCG
TCGTACTGCTACAAAAAAAGACCACACGAATGGTGGTGTAGATCTTTCTT
TCACCCCTTTGTCTACGAGCAGCAGCAGACCCATCAAATCGACTGCAAGT
GTGCATGAAACTGGTAATGCTGAGTCAAAACGCAGTAAAAATAATGCTGT
CAGCCGCTGGCTTCAAGCCCCCCTTTCCACAGACAACCAGAAGGCATCTT
CTTTCAACTGCGACCATGAGCGGCCTTACCATTCACTATCGTTCAGTCAA
CGCCCACCTTTTCGCCTTGTGCATCGTCTCCACTCCTCCCCTCGTGCCAC
GTCGACAAACAAAAGTAGTGTACCGGCTGCTAGACTTCATAATTATTCAA
CGCATGCATCGCCTTCCTTTCTTTACCCTCAATTGGCTATGTCTTTGAAA
GGCAATAGCCCTTTTGATATTCGTTCAGGCGGACAGCAGCAGCAGCAGCA
GCAGCAGCAGGCACTGGTTCACCCCTTCCCTATTACCTACCCTACTGACT
ACGGCCTTAAGGTCATTCACCACCGATATCAGTATCAGGTGCGGCCGTTT
GACGAGCCTGTAATGCTCTTATCTTCTGCATTACGGGCGAGATCGCAAGA
ACAGCTGCAACAGCAACCACACTATGGCACGCGTACGTCTCAAAGCACGT
CGCCTTCCAGACAGCAGTTGACCATCACACCGAGCCGGAGCACTCTTGAA
AGCACCACACTGACCTCGAATTGTGACAACGCGAGCAGCTCACTACAGCC
GTGTGGCGCCGTTGCCGCAATTTTATCTAACATGTCGCCTTCATCTACGA
GCTACCATGACGATGAAAAAAAGGGACAAATTCTAGGATCCCCACTCAAC
GAAGATACCATCGTACAGAGCTTGGGCAGAGAAGACACCGTTGACGGAGT
AAGTGTCTGCACTCTCCCGCTCAAAGGCAATGAGACCAAAAGGAATCTAT
CGAGAGCGAAAGATTGCAAAGATTATGGAGCTGAGGGGTTCAAAAGACAT
CTTCCAATCGATGATGCCCGCTTGCCTTTGAAAAAGCGTCGCTGCCATAT
TTCCCACAAGCACGATGACGTCTTAGCGGTCTCTGTTCTTCTAGGATTAA
AGATGCAAGGTTGA

Synonyms

Publications