EWM29534.1, cds1080 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|585112105|gb|EWM29534.1| (unc-50 family protein [Nannochloropsis gaditana]) HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0 Query: 1 MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272 MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR Sbjct: 1 MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|553191235|ref|XP_005855343.1| (unc-50 family protein [Nannochloropsis gaditana CCMP526] >gi|422293718|gb|EKU21018.1| unc-50 family protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0 Identity = 271/272 (99.63%), Postives = 271/272 (99.63%), Query Frame = 0 Query: 1 MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272 MRSYQVGGL TPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR Sbjct: 1 MRSYQVGGLGTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1072231581|gb|OEU16313.1| (UNC-50 protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 222.631 bits (566), Expect = 4.003e-69 Identity = 118/244 (48.36%), Postives = 163/244 (66.80%), Query Frame = 0 Query: 32 GSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPV-HYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRI--QATRTMARLYY 271 S+ +Y+ R+ D QMD +A + + + S+ P +YK A YRK TKNHWARDDPA A ++ FL VS AYA++F V PV + L ++LF+WL +G ++ATV R +ANR+L + +S S V Q VEW YAFDIHCNAF P F+L + +FLLPL+L SL +L+VSN ++ A FA Y+Y+THLGYRALPFL +TEVFL+P L+F VL ++G P+ + A+R MA +Y+ Sbjct: 3 SSASTAQYIARLTDFRQMDIQSALDQMKTILSTRPHVVYKTAYYRKQTKNHWARDDPAFAALEFIFLTVSCIAYAISFRV---PVTEGIAFWLYSVLFNWLGLGFIIATVGREMANRHLTDHKSTSHVRQSVEWLYAFDIHCNAFFPVFVLLYGVQFFLLPLVLGKSLFSLVVSNTLYAAGFAWYWYITHLGYRALPFLSQTEVFLFPVAAIALVF----VLNLVGYPFGLGWNASRIMAHIYF 239
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|223998268|ref|XP_002288807.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975915|gb|EED94243.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 212.231 bits (539), Expect = 2.421e-65 Identity = 107/214 (50.00%), Postives = 153/214 (71.50%), Query Frame = 0 Query: 36 LLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLL-ELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFL 247 L +Y R+ D QMD +A + + LC+ +PQR+ KMA YRK TKNHWARDDPA + +QI L++SS AY LAF + F+ L+++L +WL G+V+A+V R +AN++L+ E RS S V+Q VEW YAFD+HCN+F+P F++ + +FLLP++L SL++L V+N ++ AF YFY+THLGYRALPFL TEVFL+P I A+L+ ++ Sbjct: 1 LQQYFSRMTDLQQMDLQSAIDQMRTLCTFYPQRVSKMAYYRKQTKNHWARDDPAFSFLQIVMLVISSIAYGLAFRLSSFSAILSFV-LKSVLINWLGFGVVMASVGRVIANQHLMIEGRSASHVKQSVEWLYAFDVHCNSFVPLFVILYGVQFFLLPVVLGTSLLSLGVANTLYAIAFGWYFYITHLGYRALPFLSNTEVFLFP-IAAILVLYV 212
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1210530188|dbj|GAX11104.1| (hypothetical protein FisN_9Hh195 [Fistulifera solaris]) HSP 1 Score: 207.994 bits (528), Expect = 6.280e-63 Identity = 111/237 (46.84%), Postives = 162/237 (68.35%), Query Frame = 0 Query: 37 LEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVR-GGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYY 271 L+Y +R+ D QMD +A + + L S+ PQ +YK + YRK TKNHWARDDPA +Q FL+V+ AY++AF + G + +L L +L++WL +GL++AT+CR +ANR L+ +S S V Q+VEW YAFDIHCN+F P F+L V+ +FLLP++L+ L++L+++N+I+ A + Y+Y+THLGYRALPFL TEVFL+P + V+ + LV LG + R MAR Y+ Sbjct: 36 LQYFQRLTDVRQMDIQSALDQMKTLISTRPQVVYKTSYYRKQTKNHWARDDPAFVAMQAVFLVVAGIAYSVAFRISLQGAISFL---LYTVLWNWLGLGLLIATICREIANRQLVVQQSTSHVRQQVEWLYAFDIHCNSFFPVFVLLYVVQFFLLPVILQEGLLSLVIANSIYAGALSWYWYITHLGYRALPFLSHTEVFLFPIVAVVICYCAILVGYPLG--FGWNWARIMARFYF 267
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1210514117|dbj|GAX26899.1| (hypothetical protein FisN_9Lh195 [Fistulifera solaris]) HSP 1 Score: 207.223 bits (526), Expect = 1.068e-62 Identity = 111/237 (46.84%), Postives = 162/237 (68.35%), Query Frame = 0 Query: 37 LEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVR-GGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYY 271 L+Y +R+ D QMD +A + + L S+ PQ +YK + YRK TKNHWARDDPA +Q FL+V+ AY++AF + G + +L L +L++WL +GL++AT+CR +ANR L+ +S S V Q+VEW YAFDIHCN+F P F+L V+ +FLLP++L+ L++L+++N+I+ A + Y+Y+THLGYRALPFL TEVFL+P + V+ + LV LG + R MAR Y+ Sbjct: 36 LQYFQRLTDVRQMDIQSALDQMKTLISTRPQLVYKTSYYRKQTKNHWARDDPAFVAMQAVFLVVAGIAYSVAFRISLQGAISFL---LYTVLWNWLGLGLLIATICREIANRQLVVQQSTSHVRQQVEWLYAFDIHCNSFFPVFVLLYVVQFFLLPVILQEGLLSLVIANSIYAGALSWYWYITHLGYRALPFLSHTEVFLFPIVAVVVCYCAILVGYPLG--FGWNWARIMARFYF 267
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|299472382|emb|CBN77570.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 204.912 bits (520), Expect = 2.039e-62 Identity = 116/223 (52.02%), Postives = 157/223 (70.40%), Query Frame = 0 Query: 49 MDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYY 271 MD +A + ++ L S +PQR+YK A YRK TKNHWARDDP AV+Q FL+V++ A+ +AF RG Y+ L L ++ WLL G+V++++CR +AN LL+ RSHSVEQEVEW YA DIH N+F P F+ V+ LLPLL+ S+ +LI++N ++ AF+VYFYVTHLGYR+LPFLH TEVFLYP + ++L L ++L G RI AT MA+LY+ Sbjct: 1 MDMEATADQMVTLLSVNPQRVYKTAYYRKQTKNHWARDDPGFAVLQTFFLVVATFAFGVAFGARGVWT-YVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVEQEVEWMYALDIHSNSFFPLFVCLYVVQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFG--IRINATLAMAKLYF 220
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1214697386|gb|OWZ10674.1| (Transmembrane protein [Phytophthora megakarya]) HSP 1 Score: 204.142 bits (518), Expect = 2.868e-61 Identity = 114/243 (46.91%), Postives = 149/243 (61.32%), Query Frame = 0 Query: 16 GSGHYRRHSSSGGGGGGS-SGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS------VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVL 251 GS H ++ SG S S EY R++D QMD DA F ++ LC P ++YK A YRK TKN WARDDPA AVIQ FLLV++ A+A+AF V Y L A++ +WL GLV++T+C +AN +L + R+HS VEQ VEW++AFDIHCN+F FL VL +FL P+L S + L+V N ++ + Y Y+T LGY ALPFLHRTE L P I+ + LF LVL Sbjct: 19 GSRHKKKSKRSGADVFRSCSAFPEYFARVLDYRQMDLDATFYQMVTLCV-QPAKVYKSAYYRKQTKNRWARDDPAFAVIQFVFLLVATVAWAIAFRV-DSFAKYASLLFHAVVVEWLGFGLVISTLCWWIANHHLRQ-RNHSMGDALYVEQRVEWQFAFDIHCNSFFIMFLFLYVLQFFLAPILASDSFLMLLVGNLLYSLGWGFYTYITFLGYMALPFLHRTEQLLLPLIIVLALFISTLVL 258
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|219119214|ref|XP_002180372.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407845|gb|EEC47780.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 199.904 bits (507), Expect = 1.293e-60 Identity = 101/215 (46.98%), Postives = 145/215 (67.44%), Query Frame = 0 Query: 38 EYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVR-GGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLV 250 +YL R+ D QMD +A + + L S+ PQ +YK A YRK TKNHWARDDPA +Q FLL++ AYA++F + + +L L L++WL +G ++A++CR +ANR+L +S+S V Q+VE YAFDIHCNAF P F++ + +FLLP +L L AL+++N ++ AA + Y+Y+THLGYR LPFL TEVFL+P VLL+ + +V Sbjct: 1 QYLSRLTDVQQMDIQSALDQMKSLLSTRPQLVYKTAYYRKQTKNHWARDDPAFVALQAVFLLIACIAYAVSFRISVTDTISFL---LYNALWNWLGMGFILASLCREIANRHLTLHQSNSHVRQQVELLYAFDIHCNAFFPVFVVLYGIQFFLLPFVLAEGLFALLLANTLYAAALSWYWYITHLGYRTLPFLSNTEVFLFPIAAIVLLYTVMIV 212
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|397616508|gb|EJK64009.1| (hypothetical protein THAOC_15303 [Thalassiosira oceanica]) HSP 1 Score: 202.986 bits (515), Expect = 1.395e-60 Identity = 111/262 (42.37%), Postives = 163/262 (62.21%), Query Frame = 0 Query: 38 EYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLL-------------------TSVLH-----YFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRI--QATRTMARLYYR 272 +YL+R+ D QMD +A + + L + +PQ++YKMA YRK TKNHWARDDPA +Q+ ++ SS+AY AF V F+ +++L WL G+V+A+V R VAN++L RS S V+Q VEW YAFD+HCNAF+P F+L +++LH +FLLPL+L SL++L +SN ++ AF YFY+ HLG+RALPFL TEVFL+P + ++L+ V +G P+ + A+R +A +Y+ Sbjct: 40 QYLQRVTDLQQMDLQSAVDQMRTLLTLYPQKVYKMAYYRKQTKNHWARDDPAFCFLQVIMVIASSTAYGFAFRVSSLSSIIGFVT-KSVLLHWLGFGVVMASVGRVVANQHLQAERSSSHVKQSVEWLYAFDVHCNAFVPLFVLLCKWRRILVVRTLLTTDVSSNLLHVDGIQFFLLPLVLGTSLLSLGISNTLYAIAFGWYFYIFHLGFRALPFLSNTEVFLFPMAIILVLY----VFNFVGYPFGLGFNASRIVAYVYFE 296 The following BLAST results are available for this feature:
BLAST of EWM29534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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