EWM29651.1, cds1051 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29651.1
Unique Name	cds1051
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002456.1:1050651..1050828 +
Alignment location	CM002456.1:1050985..1051244 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29651.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100050g4.6874.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1050651..1050828 +
CM002456.1	supercontig	CM002456.1:1050985..1051244 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM29651.1 vs. NCBI_GenBank
Match: gi|585112223|gb|EWM29651.1| (hypothetical protein Naga_100050g4 [Nannochloropsis gaditana])

HSP 1 Score: 301.212 bits (770), Expect = 1.473e-103
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query:    1 MALLEKTGIPCNSGDGMPHCMFQGGGYMIKHWTPALFSSLSWQILIHSKKRKCSLKKYARRRLTVSTSVWCSVKSRGSVSESVNTGIFILPAFESWLGVFPEGEMSSMLKRRAPRQAGNRTALPLRLDGWQDRETLHSHSQGSDL 145
            MALLEKTGIPCNSGDGMPHCMFQGGGYMIKHWTPALFSSLSWQILIHSKKRKCSLKKYARRRLTVSTSVWCSVKSRGSVSESVNTGIFILPAFESWLGVFPEGEMSSMLKRRAPRQAGNRTALPLRLDGWQDRETLHSHSQGSDL
Sbjct:    1 MALLEKTGIPCNSGDGMPHCMFQGGGYMIKHWTPALFSSLSWQILIHSKKRKCSLKKYARRRLTVSTSVWCSVKSRGSVSESVNTGIFILPAFESWLGVFPEGEMSSMLKRRAPRQAGNRTALPLRLDGWQDRETLHSHSQGSDL 145

The following BLAST results are available for this feature:

BLAST of EWM29651.1 vs. NCBI_GenBank

BLAST of EWM29651.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585112223\|gb\|EWM29651.1\|	1.473e-103	100.00	hypothetical protein Naga_100050g4 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1052	rna1052	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications