rna1052, rna1052 (mRNA) Nannochloropsis gaditana

Overview
Namerna1052
Unique Namerna1052
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationCM002456.1:1050651..1051404 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100050g4.6874.mrna
Orig protein idgnl|cribi|Naga_100050g4.6874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1050651..1051404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g4gene1013Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1052rna1052-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29651.1cds1051Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1052 ID=rna1052|Name=rna1052|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGCAAAACGAGGCAGGTCAAAATGTGGACCTCTACATTCCCCGAAAATG
CTCCTGGACGAATCGCGTAATCCACTCCAAAGACCACGCTGCGGTGCAGG
TCAACGTGGCGAACGTGGATGCGAGCGGTGTATACTTACAAGGAGATTTG
AAGACAATCGCAATGGCAGGGTACATCCGTGCCAAGGGGGAAGCTGACGC
CGCTATGACAGAAATGGTAAAGAAAGCTGATAGCGAGCAGTAG
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protein sequence of rna1052

>rna1052-protein ID=rna1052-protein|Name=rna1052|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MALLEKTGIPCNSGDGMPHCMFQGGGYMIKHWTPALFSSLSWQILIHSKK
RKCSLKKYARRRLTVSTSVWCSVKSRGSVSESVNTGIFILPAFESWLGVF
PEGEMSSMLKRRAPRQAGNRTALPLRLDGWQDRETLHSHSQGSDL
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mRNA from alignment at CM002456.1:1050651..1051404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1052 ID=rna1052|Name=rna1052|organism=Nannochloropsis gaditana|type=mRNA|length=754bp|location=Sequence derived from alignment at CM002456.1:1050651..1051404+ (Nannochloropsis gaditana)
ATGGCACTTTTGGAGAAAACTGGTATACCATGCAACTCGGGGGATGGAAT
GCCACATTGTATGTTTCAAGGTGGCGGGTACATGATTAAGCATTGGACGC
CCGCTCTTTTCTCGTCCCTTTCCTGGCAAATTTTAATTCACtccaaaaaa
agaaaatgctCACTTAAAAAATACGCTCGTTGTGTAAGCTAGGGCAATTT
TTCTCTCAATTTGCAACACATTGTCGTGCTTATTTTTTGGGAGAAGAACT
TGCCTGTGGCCGTCAACTTGTTGTCACTCGTCGCTTATGGCGTGCTTTGT
AATAGATGGGGTCCTCGTCATGGTCGCTGGTTAGGGCGACGCCTAACTGT
CAGCACAAGTGTCTGGTGCAGCGTGAAGTCAAGGGGATCTGTTTCAGAGA
GTGTGAACACGGGGATATTCATCCTTCCAGCGTTCGAATCGTGGTTGGGC
GTCTTCCCGGAAGGAGAGATGTCTTCCATGTTAAAGCGACGGGCACCGCG
TCAGGCTGGCAACAGAACAGCGTTACCGCTCCGTTTGGACGGGTGGCAGG
ACCGTGAAACTCTCCACTCTCACTCCCAGGGGAGTGACCTTTGATTTTTG
CCGCAAGAAATAAAAATTCccaaaaaaaaaaataaacGGATTGGGAGAGA
CAACATGCACTGCGGGAGAatagggaaaggaaaaggactACATACACTCT
CCTGTAAGCCCGATATTTTGCCCCCGCAAAGAGAAATACCACCATGCTAG
AACT
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Coding sequence (CDS) from alignment at CM002456.1:1050651..1051404+

>rna1052 ID=rna1052|Name=rna1052|organism=Nannochloropsis gaditana|type=CDS|length=876bp|location=Sequence derived from alignment at CM002456.1:1050651..1051404+ (Nannochloropsis gaditana)
ATGGCACTTTTGGAGAAAACTGGTATACCATGCAACTCGGGGGATGGAAT
GCCACATTGTATGTTTCAAGGTGGCGGGTACATGATTAAGCATTGGACGC
CCGCTCTTTTCTCGTCCCTTTCCTGGCAAATTTTAATTCACtccaaaaaa
agaaaatgctCACTTAAAAAATACGCTCGGCGACGCCTAACTGTCAGCAC
AAGTGTCTGGTGCAGCGTGAAGTCAAGGGGATCTGTTTCAGAGAGTGTGA
ACACGGGGATATTCATCCTTCCAGCGTTCGAATCGTGGTTGGGCGTCTTC
CCGGAAGGAGAGATGTCTTCCATGTTAAAGCGACGGGCACCGCGTCAGGC
TGGCAACAGAACAGCGTTACCGCTCCGTTTGGACGGGTGGCAGGACCGTG
AAACTCTCCACTCTCACTCCCAGGGGAGTGACCTTTGAATGGCACTTTTG
GAGAAAACTGGTATACCATGCAACTCGGGGGATGGAATGCCACATTGTAT
GTTTCAAGGTGGCGGGTACATGATTAAGCATTGGACGCCCGCTCTTTTCT
CGTCCCTTTCCTGGCAAATTTTAATTCACtccaaaaaaagaaaatgctCA
CTTAAAAAATACGCTCGGCGACGCCTAACTGTCAGCACAAGTGTCTGGTG
CAGCGTGAAGTCAAGGGGATCTGTTTCAGAGAGTGTGAACACGGGGATAT
TCATCCTTCCAGCGTTCGAATCGTGGTTGGGCGTCTTCCCGGAAGGAGAG
ATGTCTTCCATGTTAAAGCGACGGGCACCGCGTCAGGCTGGCAACAGAAC
AGCGTTACCGCTCCGTTTGGACGGGTGGCAGGACCGTGAAACTCTCCACT
CTCACTCCCAGGGGAGTGACCTTTGA
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Synonyms
Publications